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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953630
Clone id TST39A01NGRL0018_E14
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_E14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGACACGCGCACACACACAAACACACACAGACTGTGAGTCCGTGACACAGTCATCTTTT
CTGCTCTTTCCTCATGGCCATACCTGGTGTGTTGCGAACAGACATGGCTTCTCTAAGTTC
CGGCGTTGCTTCCGTGCACCGGCCTTCTTCTTCCTCTGCTTCCACGGCTTCAACATCTTC
TCCATGTCTGCGCATCTCGCCAAGCAACAGACACTCCGTGAAAGTGTCGTGCTCAATACA
TCGGGGGCGAGCTGTACTGCCAAGTAGGAGGAAAGATGGCATTTTTAATAGCTTCTCGGG
CCTTCGACCTGCTCATCTTACGTCAAATAGGCAGCTGAGGCCTTTTAGCAGGTGCGACAG
GAGAAGTGGGGCTGGAACAATTCGCTGTGATGCAGGCAAAGTAAGCATCCGTCATCTACG
TTCAACTGTGCCATGTTGATTGCGAAGTGAATGGATTAGGCAATTCTGATAACCTTCTGG
ATCAGATAACACAGGGTGACTTCACTGATATGGCGTGGCAAGCTGTGGTTGCATCATCAG
AGGTTGCCAAGGAGAGTAAGCAAC
■■Homology search results ■■ -
sp_hit_id Q7NFE9
Definition sp|Q7NFE9|CLPB_GLOVI Chaperone protein clpB OS=Gloeobacter violaceus
Align length 21
Score (bit) 30.4
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953630|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E14, 5'
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7NFE9|CLPB_GLOVI Chaperone protein clpB OS=Gloeobacter viola...    30   6.3  
sp|A6X1P0|NHAA2_OCHA4 Na(+)/H(+) antiporter nhaA 2 OS=Ochrobactr...    30   8.2  

>sp|Q7NFE9|CLPB_GLOVI Chaperone protein clpB OS=Gloeobacter
           violaceus GN=clpB PE=3 SV=1
          Length = 872

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 501 FTDMAWQAVVASSEVAKESKQ 563
           FT+ AW A+V ++EVAKE +Q
Sbjct: 9   FTEKAWDAIVRTTEVAKEYRQ 29


>sp|A6X1P0|NHAA2_OCHA4 Na(+)/H(+) antiporter nhaA 2 OS=Ochrobactrum
           anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
           GN=nhaA2 PE=3 SV=1
          Length = 393

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 234 QYIGGELYCQVGGKMAFLIASRAFDLLILRQIGS*GLLAGATGEVGLEQFAVMQ 395
           Q +G  L C +G  M+  I+  AFD ++L+     G+L G+    GL  F V++
Sbjct: 329 QMLGTTLLCGIGFTMSLFISLLAFDDVLLQNEAKIGILIGSL-VAGLAGFIVLR 381
tr_hit_id A9TAU3
Definition tr|A9TAU3|A9TAU3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 27
Score (bit) 47.8
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953630|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E14, 5'
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TAU3|A9TAU3_PHYPA Predicted protein OS=Physcomitrella paten...    48   4e-04
tr|Q4LDR0|Q4LDR0_SOLLC Heat shock protein OS=Solanum lycopersicu...    44   0.005
tr|Q75GT3|Q75GT3_ORYSJ Os03g0426900 protein OS=Oryza sativa subs...    42   0.023
tr|B8AKD9|B8AKD9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.023
tr|A3AJA8|A3AJA8_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.030
tr|Q9LF37|Q9LF37_ARATH ClpB heat shock protein-like OS=Arabidops...    41   0.051
tr|A8I972|A8I972_CHLRE ClpB chaperone, Hsp100 family OS=Chlamydo...    40   0.088
tr|B8AIX1|B8AIX1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.33 
tr|Q0E3C8|Q0E3C8_ORYSJ Os02g0181900 protein OS=Oryza sativa subs...    37   0.97 
tr|B8IW64|B8IW64_METNO Extracellular ligand-binding receptor OS=...    35   2.2  
tr|A4RY55|A4RY55_OSTLU Chaperone, Hsp100 family, ClpB-type OS=Os...    35   2.2  
tr|A3A3U0|A3A3U0_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.2  
tr|B1MJA6|B1MJA6_MYCA9 Probable drug resistance transporter OS=M...    35   3.7  
tr|Q8VYJ7|Q8VYJ7_ARATH At2g25140/F13D4.100 OS=Arabidopsis thalia...    35   3.7  
tr|Q2U559|Q2U559_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   8.2  
tr|B8NV53|B8NV53_ASPFL Histone promoter control protein, putativ...    33   8.2  

>tr|A9TAU3|A9TAU3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193192 PE=3 SV=1
          Length = 909

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESKQ 563
           QI QG+FT+MAWQA+VAS +VAKESKQ
Sbjct: 8   QINQGEFTEMAWQAIVASPDVAKESKQ 34


>tr|Q4LDR0|Q4LDR0_SOLLC Heat shock protein OS=Solanum lycopersicum
           GN=Lehsp100/ClpB PE=2 SV=1
          Length = 980

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESK 560
           +ITQ DFT+MAWQA+VAS E+AKE+K
Sbjct: 83  RITQQDFTEMAWQAIVASPEIAKENK 108


>tr|Q75GT3|Q75GT3_ORYSJ Os03g0426900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0020H02.1 PE=2 SV=1
          Length = 978

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESK 560
           +ITQ +FT+MAWQ++V+S EVAKESK
Sbjct: 83  RITQQEFTEMAWQSIVSSPEVAKESK 108


>tr|B8AKD9|B8AKD9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12134 PE=4 SV=1
          Length = 964

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESK 560
           +ITQ +FT+MAWQ++V+S EVAKESK
Sbjct: 69  RITQQEFTEMAWQSIVSSPEVAKESK 94


>tr|A3AJA8|A3AJA8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010880 PE=4 SV=1
          Length = 715

 Score = 41.6 bits (96), Expect = 0.030
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +3

Query: 486 ITQGDFTDMAWQAVVASSEVAKESK 560
           ITQ +FT+MAWQ++V+S EVAKESK
Sbjct: 65  ITQQEFTEMAWQSIVSSPEVAKESK 89


>tr|Q9LF37|Q9LF37_ARATH ClpB heat shock protein-like OS=Arabidopsis
           thaliana GN=T20K14_60 PE=3 SV=1
          Length = 968

 Score = 40.8 bits (94), Expect = 0.051
 Identities = 16/27 (59%), Positives = 25/27 (92%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESKQ 563
           ++TQ +FT+MAWQ++V+S +VAKE+KQ
Sbjct: 76  RLTQQEFTEMAWQSIVSSPDVAKENKQ 102


>tr|A8I972|A8I972_CHLRE ClpB chaperone, Hsp100 family
           OS=Chlamydomonas reinhardtii GN=CLPB3 PE=3 SV=1
          Length = 1040

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = +3

Query: 450 NGLGNSDNLLDQITQGDFTDMAWQAVVASSEVAKESKQ 563
           +G G       +ITQ  FTD AWQAVVA+ E+AKE  Q
Sbjct: 118 SGSGGGSGGGKRITQNQFTDKAWQAVVAAPEIAKEYGQ 155


>tr|B8AIX1|B8AIX1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06111 PE=4 SV=1
          Length = 1219

 Score = 38.1 bits (87), Expect = 0.33
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESKQ 563
           QIT G+FT+MAW+AVV + + A+ SKQ
Sbjct: 94  QITPGEFTEMAWEAVVGAVDAARMSKQ 120



 Score = 36.6 bits (83), Expect = 0.97
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESKQ 563
           +IT G+FT+MAW+AVV + + A+ SKQ
Sbjct: 330 KITPGEFTEMAWEAVVGAVDAARMSKQ 356


>tr|Q0E3C8|Q0E3C8_ORYSJ Os02g0181900 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0181900 PE=3 SV=1
          Length = 922

 Score = 36.6 bits (83), Expect = 0.97
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 483 QITQGDFTDMAWQAVVASSEVAKESKQ 563
           QIT G+FT+MAW+ VV + + A+ SKQ
Sbjct: 36  QITPGEFTEMAWEGVVGAVDAARMSKQ 62


>tr|B8IW64|B8IW64_METNO Extracellular ligand-binding receptor
           OS=Methylobacterium nodulans ORS 2060 GN=Mnod_8566 PE=3
           SV=1
          Length = 411

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
 Frame = +3

Query: 261 QVGGKMAFLIASRAFDLLILRQIGS*GLL--AGATGEVGLEQFAVMQAK*AS-VIYVQLC 431
           Q+G K+ FL AS AF   ILR     GLL   GAT EVG+++  V  A  +S ++ ++  
Sbjct: 167 QIGKKVYFLTASYAFGQDILR--SGRGLLKEVGAT-EVGVDEVPVNTADYSSYILKIRQA 223

Query: 432 HVDCEVNGL--GNSDNLLDQITQGDFTDMAWQAVVASSE 542
             D  V GL  G+  N L Q  +    D A  A +A ++
Sbjct: 224 RPDVIVGGLVGGDFSNYLKQANEMGMKDRARFAAIAVTD 262