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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953640
Clone id TST39A01NGRL0018_E24
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_E24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGACATTCGTCTGTCTCCGCTCAATGCGAAGGGTATACTGGCAATTAATGGACTAGCTT
TCGTCGTTCAAACTGTGTTGGTGTAGCATGGCTATGGTGTTTGGTCAGACCTATTACCCG
GCCACTACTATGACGGAGTTCAAAGGTGGAGCAGGCGCAGCAACGGGGGAGGATAGCGAT
GACGAGGAGTATGTCTACGTTTCGAGGCTTGCAGAGCAGATTGCTGCGCACGCTATGCTG
GACGAAGAGGACGACCTTCCCCTGACCAGCAGGCCACAGCATCCCATCAAGCACTACAGC
CCGGACATTGCCTTCTCGAGCTATGTGCAGGGCATGAAATCGCAGGAAAAGGCTAGGCAC
ATGCAGGAAGTCGATCATCCTGTTTCACGCTTTGCAGCGGTTTGGCGTGACCACGGCCCT
AGTGAATGGGATTGTTTCTACACCCCTTCTCTTCAGGTGGAAGTTTCCAGGCAGGCCTCC
TTTCTCAACTCTCAGCTCCATCAGATTCACAAGCTTCAGGGTTGGACCTCTCTATGCTAC
GAAAATGCCAAGCAGGCTGG
■■Homology search results ■■ -
sp_hit_id Q54PY1
Definition sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyostelium discoideum
Align length 64
Score (bit) 33.9
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953640|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E24, 5'
         (560 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyosteli...    34   0.56 
sp|Q9EQ61|PESC_MOUSE Pescadillo homolog 1 OS=Mus musculus GN=Pes...    32   1.6  
sp|P53629|ARE2_YEAST Sterol O-acyltransferase 2 OS=Saccharomyces...    32   1.6  
sp|Q9USJ5|DCUP_SCHPO Uroporphyrinogen decarboxylase OS=Schizosac...    32   2.1  
sp|P08633|NODM_RHILV Glucosamine--fructose-6-phosphate aminotran...    31   4.7  
sp|Q9VP05|MED1_DROME Mediator of RNA polymerase II transcription...    31   4.7  
sp|Q6P286|DHTK1_XENLA Probable 2-oxoglutarate dehydrogenase E1 c...    31   4.7  
sp|Q68WB4|SYE2_RICTY Glutamyl-tRNA synthetase 2 OS=Rickettsia ty...    30   6.2  
sp|Q06644|PMT7_YEAST Probable dolichyl-phosphate-mannose--protei...    30   6.2  
sp|A8G4E3|CCSA_PROM2 Cytochrome c biogenesis protein ccsA OS=Pro...    30   6.2  
sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium channel s...    30   6.2  
sp|Q91Y44|BRDT_MOUSE Bromodomain testis-specific protein OS=Mus ...    30   6.2  
sp|O00506|STK25_HUMAN Serine/threonine-protein kinase 25 OS=Homo...    30   8.1  
sp|Q31BB2|CCSA_PROM9 Cytochrome c biogenesis protein ccsA OS=Pro...    30   8.1  

>sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyostelium
           discoideum GN=tbcc PE=3 SV=1
          Length = 420

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +1

Query: 202 SRLAEQIAAHAMLDEEDDLPLTSRPQHPIKHYSPDIAFSSYVQGMKSQEKARHMQEVDHP 381
           S ++ QI  H   D + ++ + S   +PI   S  I FSSY+Q +K Q++ +  QE +  
Sbjct: 316 SLVSRQIRIHYCTDCQFNIFVKS---NPIIEGSKQIKFSSYLQNLKQQQQQQQQQEQEKV 372

Query: 382 VSRF 393
           +S F
Sbjct: 373 LSSF 376


>sp|Q9EQ61|PESC_MOUSE Pescadillo homolog 1 OS=Mus musculus GN=Pes1
           PE=1 SV=1
          Length = 584

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +1

Query: 169 EDSDDEEYVYVSRLAEQIAAHAMLDEEDDLPLTSRPQHPIKHYSPDIAFSSYVQGMKSQE 348
           ED D+E  V      E +   +  +EE+++ L++  QH ++   P +   +    +K ++
Sbjct: 461 EDDDNEGDVAAENEEEDVEVESEEEEEEEVHLSALEQHRLEEKKPQVMAGT----VKLED 516

Query: 349 KARHMQEVDHPVSRFA 396
           K R  QE +    R A
Sbjct: 517 KQRLAQEEESEAKRLA 532


>sp|P53629|ARE2_YEAST Sterol O-acyltransferase 2 OS=Saccharomyces
           cerevisiae GN=ARE2 PE=1 SV=1
          Length = 642

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
 Frame = +1

Query: 304 DIAFSSYVQGMKSQEKARHMQEVDHPVSRFAAVWRDHGPSEWD---------CFYTPSLQ 456
           D  F ++V+ + S+EKAR+ Q   + +S F  +  +H PS  D          F  P+L+
Sbjct: 94  DNMFKTHVKTLSSKEKARYRQGSSNFISYFDDMSFEHRPSILDGSVNEPFKTKFVGPTLE 153

Query: 457 VEVSRQASFLNSQLHQIH 510
            E+ R+   L +    +H
Sbjct: 154 KEIRRREKELMAMRKNLH 171


>sp|Q9USJ5|DCUP_SCHPO Uroporphyrinogen decarboxylase
           OS=Schizosaccharomyces pombe GN=hem12 PE=2 SV=2
          Length = 355

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +1

Query: 85  SMAMVFGQTYYPATTMTEFKGGAGAATGEDSDDEEYVYVSRLAEQIAAHAMLDEEDDLPL 264
           +++ +  Q Y  A  +  F   AG  + ED  +  Y Y+ R+ +++  H    + D++P+
Sbjct: 188 TVSYLIQQVYAGAQLLQIFDSWAGELSPEDFTEYAYPYLVRICQEVKQHLKKKKRDEVPM 247


>sp|P08633|NODM_RHILV Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Rhizobium
           leguminosarum bv. viciae GN=nodM PE=3 SV=3
          Length = 608

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 148 GAGAATGEDSDDEEYVYVSRLA--EQIAAHAMLDEEDDLPLTSRPQHPIKHYSPDIAFSS 321
           GAG A G  +DDEE V V  LA    +    + D   ++ L SR    + HY   +    
Sbjct: 415 GAGKARGTITDDEEQVLVQSLATLPGVMRQVLNDITPEIELLSR---ELSHYRDVLYLGR 471

Query: 322 YVQGMKSQEKARHMQEVDH-PVSRFAAVWRDHGP 420
                 + E A  ++EV +     +AA    HGP
Sbjct: 472 GTSFPLAMEGALKLKEVSYIHAEGYAAGELKHGP 505


>sp|Q9VP05|MED1_DROME Mediator of RNA polymerase II transcription
            subunit 1 OS=Drosophila melanogaster GN=MED1 PE=1 SV=2
          Length = 1475

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 426  MGLFLHPFSSGGSFQAGLLSQLSAPSDSQASGLDLSMLRKCQAG 557
            +G +  P  +G S  A ++    A + + ASGL+LS LRK  AG
Sbjct: 1029 LGSYAAPSGAGASGAAAVVVGAGAGAGAGASGLELSALRKGMAG 1072


>sp|Q6P286|DHTK1_XENLA Probable 2-oxoglutarate dehydrogenase E1
           component DHKTD1, mitochondrial OS=Xenopus laevis
           GN=dhtkd1 PE=2 SV=1
          Length = 927

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 271 RPQHPIKHYSPDIAFSSYVQGMKSQEKARHMQEVDHPVSRFAAVWRDHG 417
           R +  +  Y P I+  S +Q   ++ K      VDH ++R    +R+HG
Sbjct: 27  RTERGVYGYRPKISAGSQLQESSTRGKQAASPTVDHGLARLVTAYREHG 75


>sp|Q68WB4|SYE2_RICTY Glutamyl-tRNA synthetase 2 OS=Rickettsia typhi
           GN=gltX2 PE=3 SV=1
          Length = 469

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 337 KSQEKARHMQEV--DHPVSRFAAVWRDHGPSEWDCFYTPSLQVEVSRQAS 480
           K +E AR  Q+   D     F + WRD GPS +     P ++++V R+ S
Sbjct: 102 KQEEIARQRQQALKDKKHFIFNSEWRDKGPSTYPADIKPVIRLKVPREGS 151


>sp|Q06644|PMT7_YEAST Probable dolichyl-phosphate-mannose--protein
           mannosyltransferase 7 OS=Saccharomyces cerevisiae
           GN=PMT7 PE=1 SV=1
          Length = 662

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
 Frame = +1

Query: 271 RPQHPIKHYSPDIAFSSYVQGMKSQEKARHMQEVDH------PVSRFAAVWRDHGPSEWD 432
           R Q P + Y P   F     G        H++ +D+       ++ F  +W+ H  S W+
Sbjct: 5   RLQGPYRKYIPYNIFQQCGIG--------HLKTLDYIFAFLIVITNFTLIWKSHSSSFWN 56

Query: 433 CFYTPSLQVEVSRQASFLNSQLHQIHKLQGWTSLCY 540
             +  + + E+S+   F   +   IH+L  +T   Y
Sbjct: 57  RPWDNNSEQELSQLIQFYLDKAFYIHELPPFTIQFY 92


>sp|A8G4E3|CCSA_PROM2 Cytochrome c biogenesis protein ccsA
           OS=Prochlorococcus marinus (strain MIT 9215) GN=ccsA
           PE=3 SV=1
          Length = 309

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 407 VTTALVNGIVSTPLLFRWKFPGRPPFSTL 493
           V T L+N +++  LLFRW   G  P S L
Sbjct: 48  VLTILINFLITLQLLFRWSISGHFPISNL 76
tr_hit_id Q5AVY0
Definition tr|Q5AVY0|Q5AVY0_EMENI Putative uncharacterized protein OS=Emericella nidulans
Align length 91
Score (bit) 38.9
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953640|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_E24, 5'
         (560 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5AVY0|Q5AVY0_EMENI Putative uncharacterized protein OS=Emeri...    39   0.19 
tr|Q5SHC3|Q5SHC3_THET8 ABC transporter, permease protein OS=Ther...    35   2.1  
tr|B5HCF4|B5HCF4_STRPR Salicylyl-CoA 5-hydroxylase OS=Streptomyc...    34   4.7  
tr|B3M972|B3M972_DROAN GF24148 OS=Drosophila ananassae GN=GF2414...    34   4.7  
tr|B6MX50|B6MX50_BRAFL Putative uncharacterized protein (Fragmen...    34   6.2  
tr|A9UTN3|A9UTN3_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.2  

>tr|Q5AVY0|Q5AVY0_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN7550.2 PE=4 SV=1
          Length = 713

 Score = 38.9 bits (89), Expect = 0.19
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
 Frame = +1

Query: 172 DSDDEEYVYVSRLAEQIAAH--AMLDEEDDLP---LTSRPQHPIKH-YSPDIAFSSYVQG 333
           DS+D+E++  SR   ++A H  A+LDEE++L      S P H I+  +SP+    S V+ 
Sbjct: 32  DSEDDEFLAQSRTTLELAEHDRAVLDEEEELEKLLTRSGPTHDIRRIFSPN---RSNVRI 88

Query: 334 MKSQEKARHMQEVDHPVSRFAAVWRDHGPSE 426
            K +E  R  +E +  ++R A   R HG  E
Sbjct: 89  GKKEEARRQRREKER-IARKARRERRHGDDE 118


>tr|Q5SHC3|Q5SHC3_THET8 ABC transporter, permease protein OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579)
           GN=TTHA1807 PE=3 SV=1
          Length = 496

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +2

Query: 401 FGVTTALVNGIVSTPL--LFRWKFPGRPPFSTLSSIRF 508
           +G+ +AL+   ++ PL  LFRW+FPGR  F  LS++ F
Sbjct: 50  YGLGSALLTLALALPLAFLFRWRFPGRAGFLALSTLPF 87


>tr|B5HCF4|B5HCF4_STRPR Salicylyl-CoA 5-hydroxylase OS=Streptomyces
           pristinaespiralis ATCC 25486 GN=SSDG_03062 PE=4 SV=1
          Length = 772

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
 Frame = -3

Query: 531 RGPTLK---LVNLMELRVEKGGLPGNFHLKRRGVETI--------------------PFT 421
           RG TL+   +V+ M++ V + G+PG+FHL   G   +                    P  
Sbjct: 407 RGLTLRNRVVVSPMDMYVAEDGMPGDFHLVHLGARALGGAGLVMTEMVCVSPEGRITPGC 466

Query: 420 RAVVTPNRCKA*NRMIDFLH--VPSLFLRFHALHIAREGNVRAVVLDGMLWPAGQG 259
             + T  +  A  R+ DF+H   P   +     H  R+G+ R V+ +G+  P   G
Sbjct: 467 TGLYTSEQAAAWRRVTDFVHHRAPGTAIGVQLGHSGRKGSTR-VMWEGIDQPLATG 521


>tr|B3M972|B3M972_DROAN GF24148 OS=Drosophila ananassae GN=GF24148
            PE=4 SV=1
          Length = 1323

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +1

Query: 163  TGEDSDDEEYVYVSRLAEQIAAHAMLDEEDDLPLTSRPQHPIKHYSPDIAFSSYVQGMKS 342
            T  D + +++VYV +L  QIAAH    + D L L SR    ++    D+  S+  +  K 
Sbjct: 1166 TISDEETDKHVYVKKLCNQIAAHTCRTDADKL-LISRTSQELEVDISDVNVSTLSKAFKL 1224

Query: 343  QEKAR 357
              K R
Sbjct: 1225 AAKTR 1229


>tr|B6MX50|B6MX50_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_125042 PE=4 SV=1
          Length = 881

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 403 WRDHGPSEWDCFYTPSLQVEVSRQASFLNSQLHQIHKLQGWTSLCYENAK 552
           W  H  +EW   +T + ++E     S    +LHQ+H  QG +S  YE A+
Sbjct: 273 WNIHPATEWSVTFTITERMECFCGVSDWTRRLHQLHNRQGSSSKDYEIAR 322


>tr|A9UTN3|A9UTN3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=31509 PE=4 SV=1
          Length = 1199

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 160 ATGEDSDDEEYVYVSRLAEQIAAHAMLDEEDDLPLTSRPQHPIKHYSPDIAFSSYVQGM 336
           A G  +D+E Y ++ RLA+ + A   L  +   PL SR   P KH  P   F SY+  +
Sbjct: 289 AGGHAADEEAYNFIKRLAQIVVA---LATDQLCPLWSRNNGPYKHAPP--TFESYLSAL 342