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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953708
Clone id TST39A01NGRL0018_H23
Library
Length 443
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_H23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGGTGAAGGAGCAAGAGAACGTGAAAAGGGTGCAATTGGCTGAGAAGTACCTCAATGAAG
CTGCACTTGGAGAGGCGAACGAAGATTCTATTAAGCAGGGCACGTTCTAGTAGATTTGGT
TGAAGAGCAACCATCCATGGTTGTCCATCACCACGATGTGTTGCACCACTATGCTACACC
AGGACGAAAAGAGAGGGGCTTGTTGCATGAAGGGGATCAGAGTGAGAGCATGAGAGTGTA
TGCGCCAAGAACAGATGGTGGATGATAGATGGTCTGTTTACGAAACATGTAGGAAAACCT
CATGCCGTACCTCGCCCCCATGGAATTTGTTGCGAGGCATGGGCAAGCTTCTTTGGTTTC
TATTATCCTGTTTGTATTTCATTTCTCTTTCAGATTGAAATTTATGTGAAAAGGCTATTG
CAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O98997
Definition sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus
Align length 35
Score (bit) 61.6
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953708|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_H23, 5'
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ...    62   1e-09
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ...    61   2e-09
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase...    60   3e-09
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ...    60   3e-09
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase...    60   4e-09
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ...    58   1e-08
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase...    57   2e-08
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ...    57   4e-08
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    56   6e-08
sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ...    54   2e-07
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ...    54   2e-07
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    54   2e-07
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase...    52   7e-07
sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ...    52   1e-06
sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ...    33   0.44 
sp|Q48NT5|SURA_PSE14 Chaperone surA OS=Pseudomonas syringae pv. ...    29   6.4  
sp|Q4ZMG7|SURA_PSEU2 Chaperone surA OS=Pseudomonas syringae pv. ...    29   8.4  
sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caeno...    29   8.4  

>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
           SV=2
          Length = 439

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYLNEAALG ANED+IK G+F
Sbjct: 403 VQEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437


>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3
          Length = 433

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYLNEAALGEANED++K G+F
Sbjct: 397 VAEQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
           PE=2 SV=1
          Length = 435

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/35 (77%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KY++EAALG+AN+D+IK+GTF
Sbjct: 401 VEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
           PE=2 SV=1
          Length = 441

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA++YLNEAALG ANED+IK G+F
Sbjct: 405 VQEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
           PE=2 SV=1
          Length = 476

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 27/35 (77%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KY++EAALG+AN D+IK+GTF
Sbjct: 401 VQEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Oryza sativa subsp. japonica
           GN=RCA PE=1 SV=2
          Length = 466

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           VKEQENVKRVQLAE+YL+EAALG+AN D++K G+F
Sbjct: 392 VKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 426


>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase
           activase B, chloroplastic OS=Hordeum vulgare GN=RCAB
           PE=2 SV=1
          Length = 425

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 26/35 (74%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYL+EAALG+AN+D++K G F
Sbjct: 388 VQEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422


>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Malus domestica GN=RCA PE=2
           SV=1
          Length = 437

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 26/35 (74%), Positives = 32/35 (91%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYL+EAALG+AN D++  GTF
Sbjct: 401 VQEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435


>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
          Length = 442

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYL EAALG+AN D+I  G+F
Sbjct: 405 VQEQENVKRVQLADKYLKEAALGDANADAINNGSF 439


>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2
          Length = 472

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/35 (68%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA++Y++ AALG+AN+D+I +GTF
Sbjct: 399 VQEQENVKRVQLADQYMSSAALGDANKDAIDRGTF 433
tr_hit_id Q8VYX9
Definition tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase (Fragment) OS=Pisum sativum
Align length 35
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953708|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_H23, 5'
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase ...    62   1e-08
tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom...    62   1e-08
tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    62   1e-08
tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Goss...    62   1e-08
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    62   1e-08
tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car...    62   1e-08
tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy...    61   2e-08
tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena...    61   2e-08
tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul...    61   2e-08
tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea...    60   4e-08
tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea...    60   4e-08
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome...    60   4e-08
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul...    60   5e-08
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul...    60   5e-08
tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car...    60   7e-08
tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car...    60   7e-08
tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car...    60   7e-08
tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car...    60   7e-08
tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    59   1e-07
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    59   1e-07
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    59   1e-07
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    59   1e-07
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy...    59   2e-07
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ...    59   2e-07
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|Q9AT38|Q9AT38_ORYSA Ribulose-1,5-bisphosphate carboxylase act...    58   2e-07
tr|B8BIM0|B8BIM0_ORYSI Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|B7EAB2|B7EAB2_ORYSJ cDNA clone:J013001C24, full insert sequen...    58   2e-07

>tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase
           (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 50

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/35 (82%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYL+EAALG+ANED+IK+GTF
Sbjct: 16  VQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50


>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001
           PE=4 SV=1
          Length = 438

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/35 (82%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYLNEAALG+ANED+IK G+F
Sbjct: 402 VQEQENVKRVQLADKYLNEAALGDANEDAIKSGSF 436


>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 435

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYL+EAALGEANEDSI +GTF
Sbjct: 362 VAEQENVKRVQLADKYLSEAALGEANEDSINRGTF 396


>tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment)
           OS=Gossypium hirsutum GN=RCA PE=4 SV=1
          Length = 76

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYL+EAALGEANEDSI +GTF
Sbjct: 3   VAEQENVKRVQLADKYLSEAALGEANEDSINRGTF 37


>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase alpha 2 OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 421

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 30/35 (85%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYL+EAALGEANEDSI +GTF
Sbjct: 348 VAEQENVKRVQLADKYLSEAALGEANEDSINRGTF 382


>tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase (Fragment) OS=Morus alba
           var. multicaulis PE=2 SV=1
          Length = 246

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 29/35 (82%), Positives = 34/35 (97%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V+EQENVKRVQLA+KYL+EAALG+AN+DSIK GTF
Sbjct: 175 VQEQENVKRVQLADKYLSEAALGDANQDSIKSGTF 209


>tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate
           carboxylase/oxygenase activase (Fragment) OS=Zea mays
           PE=2 SV=2
          Length = 308

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYLNEAALGEANED++K G+F
Sbjct: 272 VAEQENVKRVQLADKYLNEAALGEANEDAMKTGSF 306


>tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase OS=Zea mays PE=2 SV=1
          Length = 433

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           V EQENVKRVQLA+KYLNEAALGEANED++K G+F
Sbjct: 397 VAEQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 361

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/35 (80%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           VKEQENVKRVQLA+KYL++AALGEAN+D+I++GTF
Sbjct: 325 VKEQENVKRVQLADKYLSDAALGEANQDAIERGTF 359


>tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 475

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/35 (80%), Positives = 35/35 (100%)
 Frame = +3

Query: 3   VKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 107
           VKEQENVKRVQLA+KYL++AALGEAN+D+I++GTF
Sbjct: 404 VKEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438