DK953745
Clone id TST39A01NGRL0018_J13
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_J13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCCATAGCCAACACCAGACAGTTTCGGCATCGAGGAAGCTCTTCTTTTAGTGGGTTTTCA
GGAGTCAAGAGTGATTATCAAAGATTAGCGGGTAATTAATCTCTGCATTCCCTGCATCAT
CATGCAAGGCGCAGCGCTGCTCACTAGCCCCGCTGCCACTGCTGCTGCATTGACTCCCTG
TGCTGCATTCCTGCGCTACACCTCCACAAATGTGAGGTGTACCAGTCCCCTCCCCTTGTT
TTCTTCAAGATCTCTGCAACAGAAGCGGCGCCCACTTCTTCGTGCACAGCAACAAGATCA
GGATTATGTTACCTACGATGCGAAGAAATCGGTTTTCCCTGCTGAGGCTTGTGAAGAGCT
CGGTGGTGAAGCATGTGAAGTTGATGGTGTTGGCCCTGAGGTGAAGGGCTCTGCCTCTGC
TCCCAAGCAACAATCTTCGTCGAAGGCTGGGAGTGGTCCGGATCGGGAGTACGTGGATTA
CAAGGAAAACAAGACTGTCTTTCCTGGAGAGGCTTGCGATGACCTCGGAGGTGAGTTTTG
CGAGCCAGAGTACCAAACTGGTGT
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 49.3
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953745|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_J13, 5'
(564 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su... 49 1e-05

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
subsp. japonica GN=LIR1 PE=2 SV=1
Length = 128

Score = 49.3 bits (116), Expect = 1e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCE 544
DR+Y+ Y E TVFP EACDDLGGEFC+
Sbjct: 99 DRDYLSYDEPTTVFPEEACDDLGGEFCK 126



Score = 35.8 bits (81), Expect = 0.15
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2

Query: 473 VDYKENKTVFPGEACDDLGGEFC 541
VDY N +VFP EACD +GGE C
Sbjct: 50 VDYSSNISVFPMEACDLIGGEAC 72


tr_hit_id Q3ZDJ4
Definition tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) OS=Picea abies
Align length 35
Score (bit) 67.8
E-value 4.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953745|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_J13, 5'
(564 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O... 68 4e-10
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea... 68 4e-10
tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom... 68 4e-10
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic... 67 5e-10
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea... 67 9e-10
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=... 65 2e-09
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe... 64 6e-09
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B... 62 2e-08
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ... 62 2e-08
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m... 62 2e-08
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ... 60 1e-07
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet... 60 1e-07
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ... 59 1e-07
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1 59 2e-07
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T... 59 2e-07
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE... 57 7e-07
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali... 55 2e-06
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul... 55 2e-06
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul... 55 2e-06
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome... 55 3e-06
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1 49 1e-04
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen... 49 1e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza... 49 1e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P... 47 7e-04
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ... 35 3.7

>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
OS=Picea abies GN=LIR PE=2 SV=1
Length = 117

Score = 67.8 bits (164), Expect = 4e-10
Identities = 30/35 (85%), Positives = 32/35 (91%), Gaps = 1/35 (2%)
Frame = +2

Query: 461 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTG 562
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+G
Sbjct: 74 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSG 108



Score = 37.0 bits (84), Expect = 0.74
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 473 VDYKEN-KTVFPGEACDDLGGEFCEPE 550
VDY + K+VFP EACD +GGE CE E
Sbjct: 26 VDYDSSAKSVFPAEACDTVGGEACEGE 52


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 67.8 bits (164), Expect = 4e-10
Identities = 30/35 (85%), Positives = 32/35 (91%), Gaps = 1/35 (2%)
Frame = +2

Query: 461 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTG 562
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+G
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSG 134



Score = 37.0 bits (84), Expect = 0.74
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 473 VDYKEN-KTVFPGEACDDLGGEFCEPE 550
VDY + K+VFP EACD +GGE CE E
Sbjct: 52 VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
PE=4 SV=1
Length = 139

Score = 67.8 bits (164), Expect = 4e-10
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTG 562
DREY++Y KTVFPGEACDDLGGEFCEPEYQ G
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPEYQEG 134



Score = 36.2 bits (82), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2

Query: 473 VDYKENKTVFPGEACDDLGGEFCEPE 550
VDY +VFP EAC+ +GGE C+ E
Sbjct: 52 VDYSSTTSVFPAEACEVVGGEACDAE 77


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 144

Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +2

Query: 191 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 367
+ + +TN+ + P L +SRS + + + D V Y++ SVFP
Sbjct: 21 ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 368 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEP 547
D + PEV +REY+DY E KTVF EACDDLGG FCEP
Sbjct: 79 DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEP 137

Query: 548 EYQTG 562
+YQ G
Sbjct: 138 DYQKG 142


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 66.6 bits (161), Expect = 9e-10
Identities = 30/35 (85%), Positives = 32/35 (91%), Gaps = 1/35 (2%)
Frame = +2

Query: 461 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTG 562
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+G
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPEYQSG 134



Score = 37.0 bits (84), Expect = 0.74
Identities = 17/27 (62%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2

Query: 473 VDYKEN-KTVFPGEACDDLGGEFCEPE 550
VDY + K+VFP EACD +GGE CE E
Sbjct: 52 VDYDSSAKSVFPAEACDTVGGEACEGE 78


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
SV=1
Length = 137

Score = 65.5 bits (158), Expect = 2e-09
Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Frame = +2

Query: 245 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 412
+RS+ ++ + L+A+ QD V Y + SVFP V+ + PEV
Sbjct: 30 TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 413 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEPEYQTG 562
+REY+ Y KTVFP EACDDLGGEFC+PEYQ G
Sbjct: 89 PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKG 135


>tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium
perenne GN=LIR1 PE=2 SV=1
Length = 136

Score = 63.9 bits (154), Expect = 6e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTG 562
+REY+ Y E KTVFPGEACDDLGGEFCE YQTG
Sbjct: 99 EREYLSYDEAKTVFPGEACDDLGGEFCEAPYQTG 132


>tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein
OS=Brassica campestris PE=2 SV=1
Length = 138

Score = 62.4 bits (150), Expect = 2e-08
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQ 556
DREY++Y KTVFP EACDDLGGEFCEP+YQ
Sbjct: 103 DREYLEYNNPKTVFPAEACDDLGGEFCEPDYQ 134


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
PE=2 SV=1
Length = 138

Score = 62.0 bits (149), Expect = 2e-08
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTG 562
DR+Y+ Y E KTVFPGEACDDLGGEFCE YQ G
Sbjct: 97 DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDG 130



Score = 33.5 bits (75), Expect = 8.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2

Query: 473 VDYKENKTVFPGEACDDLGGEFC 541
+DY + +VFP EACD LGG+ C
Sbjct: 50 IDYSSSVSVFPMEACDLLGGDAC 72


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 125

Score = 62.0 bits (149), Expect = 2e-08
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2

Query: 461 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTG 562
DR+Y+ Y E KTVFPGEACDDLGGEFCE YQ G
Sbjct: 84 DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDG 117