DK953746 |
Clone id |
TST39A01NGRL0018_J14 |
Library |
TST39 |
Length |
488 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_J14. 5' end sequence. |
Accession |
DK953746 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL319Contig1 |
Sequence |
CGACCTCTCCTCTGTCCGTGGAAGTGCACAATCCCCATGGAAAATTGCGCGTCATCAGCA CCAAGCCCATGCCTGGCTCCCGCTGGATTAAGCTTCTTGTCGATGCCGGGTGTCGAGTTG AGATTTGCACGGAAAAAAAAACTATTCTCAGTGTCAATGATATCAAACGTCTGATTGGAA GGAAGTGTGATGGCGTGATTGGCCAGCTCACTGAAGACTGGGGAGATGGCCTCTTTTCTT CCCTCAAAGCAACCGGAGGCCATGCTTACAGCAACATGGCAGTTGGATACAACAATGTTA ACGTTGAGGCGGCCACACGTAACGGTGTAGCTGTAGGCAATACACCAGGGGTTCTTACCG AAACAACTGCCGAGCTTGCTGCGGCATTAACCTTAGCAGCTGCTCGACGGGTTGTTGAAG CTGATTACTTCATGCGGGCAGGAAAATATGATGGCTGGCTTCCAACTTTGTTCATCGGAA ATTTGCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P13443 |
Definition |
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus |
Align length |
160 |
Score (bit) |
209.0 |
E-value |
4.0e-54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953746|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0018_J14, 5' (488 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus ... 209 4e-54 sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakara... 46 1e-04 sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litora... 45 2e-04 sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikosh... 45 2e-04 sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN... 44 3e-04 sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus... 44 4e-04 sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptof... 44 4e-04 sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi G... 43 7e-04 sp|O94574|YGDH_SCHPO Putative 2-hydroxyacid dehydrogenase C1773.... 38 0.021 sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1... 37 0.037 sp|Q8CNB8|Y1879_STAES Putative 2-hydroxyacid dehydrogenase SE_18... 37 0.037 sp|Q59642|LDHD_PEDAC D-lactate dehydrogenase OS=Pediococcus acid... 37 0.062 sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUH... 35 0.14 sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR23... 35 0.14 sp|Q99RW8|Y2305_STAAM Putative 2-hydroxyacid dehydrogenase SAV23... 35 0.14 sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL... 35 0.14 sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA... 35 0.14 sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW222... 35 0.14 sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS21... 35 0.14 sp|Q2YYT9|Y2178_STAAB Putative 2-hydroxyacid dehydrogenase SAB21... 35 0.14 sp|Q7A417|Y2098_STAAN Putative 2-hydroxyacid dehydrogenase SA209... 35 0.14 sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP060... 35 0.18 sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus ... 34 0.31 sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macac... 34 0.31 sp|Q4L8G4|Y752_STAHJ Putative 2-hydroxyacid dehydrogenase SH0752... 34 0.40 sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo... 34 0.40 sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan t... 34 0.40 sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus m... 34 0.40 sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo ... 34 0.40 sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos t... 33 0.53
>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1 Length = 382
Score = 209 bits (533), Expect = 4e-54 Identities = 102/160 (63%), Positives = 116/160 (72%) Frame = +3
Query: 9 PLSVEVHNPHGKLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVNDIKRLIGRKC 188 P+ +EV NP+GK RV+STKPMPG+RWI LL++ CRVEICTEKKTILSV DI LIG KC Sbjct: 4 PVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKC 63
Query: 189 DGVIGQLTEDWGDGLFSSLKATGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXX 368 DGVIGQLTEDWG+ LFS+L GG A+SNMAVGYNNV+V AA + GVAVGNTPG Sbjct: 64 DGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETT 123
Query: 369 XXXXXXXXXXXXXXXXXXDYFMRAGKYDGWLPTLFIGNLL 488 D FMRAG+YDGWLP LF+GNLL Sbjct: 124 AELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLL 163
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1 Length = 333
Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%) Frame = +3
Query: 117 VEICTEKKTILSVNDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKATGGHAYSNMAVGYNN 296 VE+ E++ I +K++ R D ++ L+E +F + A +N AVGY+N Sbjct: 25 VEVWPEEREIPREVLLKKV--RDVDALVTMLSERIDSEVFDA--APRLRIVANYAVGYDN 80
Query: 297 VNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD----GWLP 464 ++VE ATR G+ V NTP D+F R+G++ W P Sbjct: 81 IDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHP 140
Query: 465 TLFIG 479 F+G Sbjct: 141 RWFLG 145
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 Length = 331
Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Frame = +3
Query: 279 AVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-- 452 AVGY+N+++E AT+ G+ V NTPG D F+R+G++ Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKS 134
Query: 453 --GWLPTLFIG 479 GW P +F+G Sbjct: 135 EVGWHPLMFLG 145
>sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2 Length = 334
Score = 45.1 bits (105), Expect = 2e-04 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 4/150 (2%) Frame = +3
Query: 42 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVNDIKRLIGRKCDGVIGQLTEDW 221 K +V T+ +P IK+L D VE+ ++K I +K++ ++ D ++ L+E Sbjct: 2 KPKVFITREIP-EVGIKMLEDE-FEVEVWGDEKEIPREILLKKV--KEVDALVTMLSERI 57
Query: 222 GDGLFSSLKATGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 401 +F + A +N AVGY+N+++E AT+ G+ V NTP Sbjct: 58 DKEVFEN--APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 402 XXXXXXXDYFMRAGKYD----GWLPTLFIG 479 D F+R+G++ W P F+G Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLG 145
>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2 Length = 335
Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Frame = +3
Query: 270 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 449 + MAVG++N++VE ATR G+ V NTPG D+F+R G++ Sbjct: 73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEW 132
Query: 450 ----DGWLPTLFIG 479 GW P + +G Sbjct: 133 WRLRTGWHPMMMLG 146
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1 Length = 336
Score = 43.9 bits (102), Expect = 4e-04 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 4/150 (2%) Frame = +3
Query: 42 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVNDIKRLIGRKCDGVIGQLTEDW 221 K +V T+ +P I +L + VE+ E++ I ++++ + D ++ L+E Sbjct: 2 KPKVFITRAIP-ENGINMLEEE-FEVEVWEEEREIPREKLLEKV--KDVDALVTMLSERI 57
Query: 222 GDGLFSSLKATGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 401 +F + A +N AVGY+N++VE ATR G+ V NTP Sbjct: 58 DQEVFEN--APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLAT 115
Query: 402 XXXXXXXDYFMRAGKYD----GWLPTLFIG 479 D F+R+G++ W P F+G Sbjct: 116 ARHVVKGDKFVRSGEWKRKGIAWHPKWFLG 145
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1 Length = 332
Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%) Frame = +3
Query: 180 RKCDGVIGQLTEDWGDGLFSSLKATGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXX 359 + CD ++ LT+ +F + A + AVGY+N++V+ AT+ G+ V NTPG Sbjct: 44 KDCDALVSLLTDPIDAEVFEA--APKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLT 101
Query: 360 XXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-GWLPTLFIG 479 D ++R GK+ W P + +G Sbjct: 102 ETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLG 142
>sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1 Length = 335
Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Frame = +3
Query: 270 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 449 +N AVGY+N++VE AT+ G+ V NTPG D F R+G++ Sbjct: 73 ANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEW 132
Query: 450 D----GWLPTLFIG 479 W P F+G Sbjct: 133 KKRGVAWHPKWFLG 146
>sp|O94574|YGDH_SCHPO Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3 Length = 340
Score = 38.1 bits (87), Expect = 0.021 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = +3
Query: 279 AVGYNNVNVEAATRNGVAVGNTP 347 A GYNNV+V+ ATRNGV V NTP Sbjct: 91 AAGYNNVDVDWATRNGVYVANTP 113
>sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1 Length = 317
Score = 37.4 bits (85), Expect = 0.037 Identities = 19/70 (27%), Positives = 27/70 (38%) Frame = +3
Query: 270 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 449 +N G+NN++VE A + + V NTP D+ R + Sbjct: 71 ANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGF 130
Query: 450 DGWLPTLFIG 479 DGW P F G Sbjct: 131 DGWAPLFFRG 140
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U188 |
Definition |
tr|A9U188|A9U188_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
159 |
Score (bit) |
213.0 |
E-value |
3.0e-54 |
Report |
|