| DK953759 |
| Clone id |
TST39A01NGRL0018_K03 |
| Library |
TST39 |
| Length |
628 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_K03. 5' end sequence. |
| Accession |
DK953759 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL415Contig1 |
| Sequence |
CTTCACGATCTTCCTTTTCGGCGTCTTCGCGGGGACTTTCTCTCGGCAGGCCATTGAGGG
TTAGCATCAGCGGTTCAGGTTTAAAGGCTTCACCACGCCATGTGCGAGCAGCAACCTCCA
CTGATGAGGCCTCTACTACCTCTACAACAACCTCTGTGCAAACTGAAGAGCTTATTGCAG
ATTTAAAGGCTAAGTGGGATAGCATTGAGGACAAGACTAATCTACTTGTATACGGAGGGG
GTGCTCTTGTTGCAATATGGTTGTCCTCCACGATTGTTGGGGCTGTAAATTCTGTGCCAT
TGCTTCCAAAGGTTTTAGAGCTTGTAGGTTTGGGTTACACTGGTTGGTTTGTCTACAAGT
ACCTTCTTTTCAAGGAGAGCAGGAAGGAGTTGGTGAGAGATATTGAAGAGTTGAAGTCTA
AGATTGCTGGAGGTGCTAAGGAATAAAAATGCATGCTGCACTCATCCTCCTGAAGCGCTT
CCCCCCATGGCTGAACTAAGAGTGCCTTGTAAATAGTGGCACTTGACACAGGGGGCAAGG
TGATTGATTGTGGGCTTTTTTGTTCTAGAGTTGTATCTATCCATGTGCCATTTTTTTCAA
GATCCATTGTTTGGCCAAAAAAAAAAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O04616 |
| Definition |
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana |
| Align length |
87 |
| Score (bit) |
145.0 |
| E-value |
2.0e-34 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK953759|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_K03, 5'
(600 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop... 145 2e-34
sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ... 74 6e-13
sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai... 42 0.002
sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associat... 32 3.2
sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102 O... 31 4.2
sp|Q54VQ6|SPCS_DICDI O-phosphoseryl-tRNA(Sec) selenium transfera... 31 4.2
sp|P16004|CD4_PANTR T-cell surface glycoprotein CD4 OS=Pan trogl... 31 4.2
sp|P01730|CD4_HUMAN T-cell surface glycoprotein CD4 OS=Homo sapi... 31 4.2
sp|Q5GH61|XK_RAT Membrane transport protein XK OS=Rattus norvegi... 31 5.5
sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglody... 31 5.5
sp|P51811|XK_HUMAN Membrane transport protein XK OS=Homo sapiens... 31 5.5
>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150,
chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1
SV=1
Length = 164
Score = 145 bits (366), Expect = 2e-34
Identities = 66/87 (75%), Positives = 77/87 (88%)
Frame = +3
Query: 171 LIADLKAKWDSIEDKTNLLVYGGGALVAIWLSSTIVGAVNSVPLLPKVLELVGLGYTGWF 350
LI DLK KWD +E+K+ +L+YGGGA+VA+WLSS +VGA+NSVPLLPKV+ELVGLGYTGWF
Sbjct: 76 LITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWF 135
Query: 351 VYKYLLFKESRKELVRDIEELKSKIAG 431
VY+YLLFK SRKEL DIE LK KIAG
Sbjct: 136 VYRYLLFKSSRKELAEDIESLKKKIAG 162
>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa,
chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
Length = 174
Score = 73.9 bits (180), Expect = 6e-13
Identities = 32/89 (35%), Positives = 54/89 (60%)
Frame = +3
Query: 171 LIADLKAKWDSIEDKTNLLVYGGGALVAIWLSSTIVGAVNSVPLLPKVLELVGLGYTGWF 350
++ + W+ ++DK + +VA+W S+ ++ A++ +PL+P VLELVG+GYTGWF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 351 VYKYLLFKESRKELVRDIEELKSKIAGGA 437
YK L+FK R+ L ++ I G +
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILGSS 174
>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain PCC
7120) GN=valS PE=3 SV=1
Length = 1014
Score = 42.0 bits (97), Expect = 0.002
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +3
Query: 213 KTNLLVYGGGALVAIWLSSTIVGAVNSVPLLPKVLELVGLGYTGWFVYKYLLFKESRKEL 392
KT LV G LV + ++ + V++VP L E+VGLGY+ WFV + LL +RK
Sbjct: 846 KTIGLVIAG--LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRF 903
Query: 393 V 395
+
Sbjct: 904 L 904
>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated
protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
Length = 3848
Score = 31.6 bits (70), Expect = 3.2
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -2
Query: 377 LLEKKVLVDKPTSVTQTYKL*NLWK-QWHRIYSPNNRGG 264
+L KK++++ PT +T+TY+L NL + I +PN+ GG
Sbjct: 3125 ILPKKLIIEFPTGLTKTYRLGNLEENSIVSIKNPNSSGG 3163
>sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102
OS=Homo sapiens GN=PRO3102 PE=5 SV=1
Length = 93
Score = 31.2 bits (69), Expect = 4.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Frame = +2
Query: 230 IRRGCSCCNMVVLHDC---------W-GCKFCAIASKGFRACRFGLHWLVCLQ 358
++R CC + V+ C W GC+ C C F LHWL C+Q
Sbjct: 47 MKRAPRCCCLAVVAQCPHHCPVLGCWSGCRCCCY-------CVFELHWLYCIQ 92
>sp|Q54VQ6|SPCS_DICDI O-phosphoseryl-tRNA(Sec) selenium transferase
OS=Dictyostelium discoideum GN=sepsecs PE=3 SV=1
Length = 479
Score = 31.2 bits (69), Expect = 4.2
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 219 NLLVYGGGALVA-------IWLSSTIVGAVNSVPLLPKVLELVGLGYTGWFVYKYLLFKE 377
N +V GGA+++ +S G NS P+L + L+ +G GW L +
Sbjct: 288 NFMVPVGGAIISGPNSEFIDQISRNYPGRANSSPILDVFITLLSMGKQGW-----LNLLK 342
Query: 378 SRKELVRDIEELKSKIA 428
RKEL+ E SK A
Sbjct: 343 ERKELLIYFNEQLSKFA 359
>sp|P16004|CD4_PANTR T-cell surface glycoprotein CD4 OS=Pan
troglodytes GN=CD4 PE=2 SV=1
Length = 458
Score = 31.2 bits (69), Expect = 4.2
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -1
Query: 435 HLQQS*TSTLQYLSPTPSCSP*KEGTCRQTNQCNPNLQALKPLEAMAQNLQPQQSWRTTI 256
HL Q + TL SP P SP + CR N+Q K L LQ +W T+
Sbjct: 132 HLLQGQSLTLTLESP-PGSSPSVQ--CRSPR--GKNIQGGKTLSVSQLELQDSGTWTCTV 186
Query: 255 LQQEHPLRIQVD 220
LQ + + ++D
Sbjct: 187 LQNQKKVEFKID 198
>sp|P01730|CD4_HUMAN T-cell surface glycoprotein CD4 OS=Homo sapiens
GN=CD4 PE=1 SV=1
Length = 458
Score = 31.2 bits (69), Expect = 4.2
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -1
Query: 435 HLQQS*TSTLQYLSPTPSCSP*KEGTCRQTNQCNPNLQALKPLEAMAQNLQPQQSWRTTI 256
HL Q + TL SP P SP + CR N+Q K L LQ +W T+
Sbjct: 132 HLLQGQSLTLTLESP-PGSSPSVQ--CRSPR--GKNIQGGKTLSVSQLELQDSGTWTCTV 186
Query: 255 LQQEHPLRIQVD 220
LQ + + ++D
Sbjct: 187 LQNQKKVEFKID 198
>sp|Q5GH61|XK_RAT Membrane transport protein XK OS=Rattus norvegicus
GN=Xk PE=1 SV=1
Length = 445
Score = 30.8 bits (68), Expect = 5.5
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 174 IADLKAKWDSIEDKTNLLVYGGGALVAIWLSSTIVGAVNSVPLLPKVLEL-----VGLGY 338
I +K K+D E K L Y + +W S I V + L VL++ + + +
Sbjct: 188 ILAIKIKYDEYEVKVKPLAY---VCIFLWRSFEIATRVIVLVLFTSVLKIWVVVVILVNF 244
Query: 339 TGWFVYKYLLFKESRKELVRDIEELKSKI 425
+F+Y ++LF S +IE+ +++
Sbjct: 245 FSFFLYPWILFWNSGSPFPENIEKALTRV 273
>sp|Q49LS5|XK_PANTR Membrane transport protein XK OS=Pan troglodytes
GN=XK PE=2 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 5.5
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 174 IADLKAKWDSIEDKTNLLVYGGGALVAIWLSSTIVGAVNSVPLLPKVLE-----LVGLGY 338
I +K K+D E K L Y + +W S I V + L VL+ ++ + +
Sbjct: 189 ILAIKIKYDEYEVKVKPLAY---VCIFLWRSFEIATRVVVLVLFTSVLKTWVVVIILINF 245
Query: 339 TGWFVYKYLLFKESRKELVRDIEELKSKI 425
+F+Y ++LF S +IE+ S++
Sbjct: 246 FSFFLYPWILFWCSGSPFPENIEKALSRV 274
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B4FTJ9 |
| Definition |
tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea mays |
| Align length |
90 |
| Score (bit) |
148.0 |
| E-value |
3.0e-34 |
| Report |
|