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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953767
Clone id TST39A01NGRL0018_K11
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_K11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGTAGGAGATAAGATGTCCTGCTGCAATGGTAACTGTGGGTGCGG
CGCAAACTGTCAATGCGCCAGCGGCTGCAAGGGGTGCGGCCGAACTGACAGCCTTGTGCT
GTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCTATGAAAG
GGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTTCTTGTTT
CCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACACCAAAAAT
AATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCGCTTGTAC
ATAGAATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAATGGCTTAAGCC
AAGCCATAAAATGCAAAAAAAAAAATAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 34.7
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953767|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_K11, 5'
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    35   0.17 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    33   0.51 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   0.86 
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   0.86 
sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia c...    30   3.3  
sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog OS=Esche...    30   3.3  
sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-bindin...    30   5.6  
sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-bindin...    30   5.6  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   5.6  
sp|A7XYJ6|SOBPB_DANRE Sine oculis-binding protein homolog OS=Dan...    29   7.3  
sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol t...    29   7.3  
sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA P...    29   7.3  
sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain C...    29   7.3  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   7.3  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -3

Query: 255 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 76
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 75  H*QFAPHPQLPLQQD 31
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 255 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 76
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 75  H*QFAPHPQLPLQQD 31
                 HP L +  D
Sbjct: 199 ----GRHPNLDMFDD 209


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 255 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 76
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 75  H*QFAPHPQLPLQQD 31
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 255 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 76
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P    P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 75  H*QFAPHPQLPLQQD 31
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia coli
           (strain K12) GN=zipA PE=1 SV=3
          Length = 328

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 99  PHPLQPLAH*QFAPHPQLPLQQDI 28
           PHP QP+    + P P+ PLQQ +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=zipA PE=3 SV=1
          Length = 328

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 99  PHPLQPLAH*QFAPHPQLPLQQDI 28
           PHP QP+    + P P+ PLQQ +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-binding
           protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3
           SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -3

Query: 165 QTEAVALRTRGASFDSTRLSVRPHPLQPL----------AH*QFAPHPQLPLQQDI 28
           +T  +A R    + D T L+VR HP +PL           H  F   P +P+ QD+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-binding
           protein Rv1348/MT1390 OS=Mycobacterium tuberculosis
           GN=Rv1348 PE=3 SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -3

Query: 165 QTEAVALRTRGASFDSTRLSVRPHPLQPL----------AH*QFAPHPQLPLQQDI 28
           +T  +A R    + D T L+VR HP +PL           H  F   P +P+ QD+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 228  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-LQPLAH*QFAPHP 52
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P  QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 51   QLP 43
              P
Sbjct: 1033 AAP 1035


>sp|A7XYJ6|SOBPB_DANRE Sine oculis-binding protein homolog OS=Danio
           rerio GN=sobpb PE=2 SV=1
          Length = 668

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 99  PHPLQPLAH*QFAPHPQLPLQQDILSPT 16
           PHPL P     FAP P  PL    L PT
Sbjct: 377 PHPLSPTQRVPFAPPPHYPLPYLPLHPT 404
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 27
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953767|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_K11, 5'
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.38 
tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   3.2  
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    33   9.3  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 96  HPLQPLAH*QFAPHPQLPLQQDILSPT 16
           HP QPL H Q  PHPQLP Q D+   T
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDMYGAT 246


>tr|A8JG52|A8JG52_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_194715 PE=4 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
 Frame = +1

Query: 49  LWVRRKLSMRQRLQGVRPN--------*QPCAVEGGASRSQCHCLRLPQL*KGSRFRSGE 204
           L +RR L ++ RLQG +PN         QP  +   AS    H L  P      R RSG+
Sbjct: 44  LELRRALELQCRLQGPQPNATGPVLQPRQPLPLPPAASPQLLHDLGTPPTQSSGRLRSGQ 103

Query: 205 HLWVSW 222
             W  W
Sbjct: 104 LTWRYW 109


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 255 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQPLA 76
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P    P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 75  H 73
           H
Sbjct: 201 H 201