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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953793
Clone id TST39A01NGRL0018_L13
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_L13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGGGTGGAGGCTATAGCAGTGGTTCACGCTATGGTGACAGGGAAAGTGGGTATGGAGGAA
GGTCAAATGGAGGTGGCTATGGTGGTGGGCGGGAGCGCAGCAGTTATGGTGGAGGAGGTG
GTGGTGGATATGGCGAAGGGGGAAGAAATGGTTATGGTGGAGGGGCAGGTGGTTATGGTG
GAGGAAGCAGGTATGGCAGTAGTGGGGGTCCAGACTCTGGCAGCTGGAGGAAGAATTAAC
AAGCGTTTTTTGTCGGTCGACGACTTTGCAGAAGTTAAAGAAAGTTCAGTGTTTTTTCAG
GGTCTACTTCTCCCTGACTGTACTTATTACTTTGTATTAGTCAAATGCAGAGTTTTATGT
ATTGCTAGGCAGCTTGGTCGTTTGAACAGGGTTGATGAGAGGTGACTTCACTTACTTCCT
GCTGACAGGACTCAGTCCGCAAGCTGTGACATTTTGTGTGTGTATGGGTGTGTGTTGAAA
ACCGT
■■Homology search results ■■ -
sp_hit_id Q7MYM5
Definition sp|Q7MYM5|WZYE_PHOLL Putative ECA polymerase OS=Photorhabdus luminescens subsp. laumondii
Align length 34
Score (bit) 29.3
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953793|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_L13, 5'
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7MYM5|WZYE_PHOLL Putative ECA polymerase OS=Photorhabdus lum...    29   9.8  
sp|Q5RJG1|NOL10_MOUSE Nucleolar protein 10 OS=Mus musculus GN=No...    29   9.8  

>sp|Q7MYM5|WZYE_PHOLL Putative ECA polymerase OS=Photorhabdus
           luminescens subsp. laumondii GN=wzyE PE=3 SV=1
          Length = 459

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 236 LTSVFCRSTTLQKLKKVQCFFRVYFSLTVLITLY 337
           ++ VF  + T Q+ ++V+  F ++FSL  L+T Y
Sbjct: 15  ISLVFILTLTYQEFRRVRFNFNIFFSLLYLLTFY 48


>sp|Q5RJG1|NOL10_MOUSE Nucleolar protein 10 OS=Mus musculus GN=Nol10
           PE=2 SV=1
          Length = 687

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +1

Query: 247 FLSVDDFAEVKESSVFFQGLLLP----DCTYYFVLVKCRVLCIARQLGRLNRVDER*LHL 414
           FL  D + E    S F+    +P    D +Y++       +  + ++ RLN    R L+ 
Sbjct: 112 FLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNP 171

Query: 415 LPADRTQSASCDILCVYG 468
           L  D  ++  CDI  V+G
Sbjct: 172 LQTDAAENNVCDINAVHG 189
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953793|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_L13, 5'
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******