DK953798
Clone id TST39A01NGRL0018_L18
Library
Length 302
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_L18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTATTAGATCCGTTCAAACGGCTTCGAAGGGAGGATTGTTGGGCTGCACCGTCTCAAGTT
GCCCTCATGGGTTCCATGGCATTTAGATCTCAGAACAGACTATTACCCAACATAATGTAT
CAACCTGACCGATGCCCACACAAAGCATCATAACCGGCACTGATTTTGTAGAGAGTTTCC
ACCCACAACATTATAATGAGCAGCAGCATGAACTTGGCTATCACCATTTTTGGCTTTGTC
CTCAGTGCTCTCTTTCTTATGGTCATCTGCTGCCGCCTCCTCTGCTCTCACTCCCGGCAA
AA
■■Homology search results ■■ -
sp_hit_id Q6FEV2
Definition sp|Q6FEV2|TRUA_ACIAD tRNA pseudouridine synthase A OS=Acinetobacter sp. (strain ADP1)
Align length 27
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953798|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_L18, 5'
(302 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6FEV2|TRUA_ACIAD tRNA pseudouridine synthase A OS=Acinetobac... 29 6.4
sp|P06235|NOG4_RHIME Nodulation protein G OS=Rhizobium meliloti ... 29 8.4

>sp|Q6FEV2|TRUA_ACIAD tRNA pseudouridine synthase A OS=Acinetobacter
sp. (strain ADP1) GN=truA PE=3 SV=1
Length = 271

Score = 29.3 bits (64), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3

Query: 156 GTDFVESFHPQHYNEQQHELGYHHFWL 236
G F+++++P+H+ QH LG H WL
Sbjct: 238 GLYFIQAYYPEHFELPQHPLGPH--WL 262


>sp|P06235|NOG4_RHIME Nodulation protein G OS=Rhizobium meliloti
GN=nodG PE=3 SV=1
Length = 244

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2

Query: 26 EGRIVGLHRLKLPSWVPWHLDLRT 97
+G IVGLH ++ +W W L L T
Sbjct: 29 QGAIVGLHGTQMKNWRHWQLSLET 52


tr_hit_id Q6EP83
Definition tr|Q6EP83|Q6EP83_ORYSJ Os02g0676500 protein OS=Oryza sativa subsp. japonica
Align length 34
Score (bit) 37.4
E-value 0.37
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953798|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_L18, 5'
(302 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6EP83|Q6EP83_ORYSJ Os02g0676500 protein OS=Oryza sativa subs... 37 0.37
tr|B8AGG8|B8AGG8_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.37
tr|A7QBJ8|A7QBJ8_VITVI Chromosome chr13 scaffold_74, whole genom... 37 0.48
tr|A7PY03|A7PY03_VITVI Chromosome chr15 scaffold_37, whole genom... 37 0.48
tr|A5BB61|A5BB61_VITVI Putative uncharacterized protein OS=Vitis... 37 0.48
tr|A2Q3Q2|A2Q3Q2_MEDTR Zinc finger, RING-type OS=Medicago trunca... 36 1.1
tr|B7FIK5|B7FIK5_MEDTR Putative uncharacterized protein (Fragmen... 35 2.4
tr|B3MMS3|B3MMS3_DROAN GF19719 OS=Drosophila ananassae GN=GF1971... 33 7.0
tr|Q2QXP1|Q2QXP1_ORYSJ Zinc finger, C3HC4 type family protein, e... 33 9.1
tr|B8BM26|B8BM26_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.1

>tr|Q6EP83|Q6EP83_ORYSJ Os02g0676500 protein OS=Oryza sativa subsp.
japonica GN=P0135D07.30 PE=4 SV=1
Length = 210

Score = 37.4 bits (85), Expect = 0.37
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1

Query: 193 IMSSSMNLAITIFGFVLSALFLMVICCRLLCSHS 294
++ S +NL T+ GF +SA F++ +C RL+C +
Sbjct: 1 MLGSGLNLVTTVIGFGMSATFIVFVCARLICGRA 34


>tr|B8AGG8|B8AGG8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08453 PE=4 SV=1
Length = 220

Score = 37.4 bits (85), Expect = 0.37
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1

Query: 193 IMSSSMNLAITIFGFVLSALFLMVICCRLLCSHS 294
++ S +NL T+ GF +SA F++ +C RL+C +
Sbjct: 1 MLGSGLNLVTTVIGFGMSATFIVFVCARLICGRA 34


>tr|A7QBJ8|A7QBJ8_VITVI Chromosome chr13 scaffold_74, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00035002001
PE=4 SV=1
Length = 228

Score = 37.0 bits (84), Expect = 0.48
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = +1

Query: 193 IMSSSMNLAITIFGFVLSALFLMVICCRLLCS 288
++S +NL +T+ GF +S +F++ +C RL+C+
Sbjct: 1 MISGGVNLVMTVIGFAVSTMFIVFVCTRLVCA 32


>tr|A7PY03|A7PY03_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026250001
PE=4 SV=1
Length = 201

Score = 37.0 bits (84), Expect = 0.48
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1

Query: 196 MSSSMNLAITIFGFVLSALFLMVICCRLLCSHSR 297
M MNL T+ GF +SA F++ +C RL+C R
Sbjct: 1 MLGGMNLITTVIGFGMSATFIVFVCTRLICGRLR 34


>tr|A5BB61|A5BB61_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011419 PE=4 SV=1
Length = 224

Score = 37.0 bits (84), Expect = 0.48
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1

Query: 196 MSSSMNLAITIFGFVLSALFLMVICCRLLCSHSR 297
M MNL T+ GF +SA F++ +C RL+C R
Sbjct: 24 MLGGMNLITTVIGFGMSATFIVFVCTRLICGRLR 57


>tr|A2Q3Q2|A2Q3Q2_MEDTR Zinc finger, RING-type OS=Medicago
truncatula GN=MtrDRAFT_AC155886g30v2 PE=4 SV=1
Length = 190

Score = 35.8 bits (81), Expect = 1.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1

Query: 193 IMSSSMNLAITIFGFVLSALFLMVICCRLLCSHSR 297
++ S NL T+ GF +SA F++ +C R++C R
Sbjct: 1 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLR 35


>tr|B7FIK5|B7FIK5_MEDTR Putative uncharacterized protein (Fragment)
OS=Medicago truncatula PE=2 SV=1
Length = 187

Score = 34.7 bits (78), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1

Query: 193 IMSSSMNLAITIFGFVLSALFLMVICCRLLC 285
++ S NL T+ GF +SA F++ +C R++C
Sbjct: 1 MLGSGTNLVTTVIGFGMSATFIVFVCTRIIC 31


>tr|B3MMS3|B3MMS3_DROAN GF19719 OS=Drosophila ananassae GN=GF19719
PE=4 SV=1
Length = 80

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3

Query: 258 KKESTEDKAKNGDSQVHAAAHYNVVGGNSLQNQCRL*CFV 139
+ S EDKA NG ++ AA V+ G + QCR C +
Sbjct: 13 RSRSAEDKASNGHNERKKAAEAKVLSGAASSGQCRTKCVI 52


>tr|Q2QXP1|Q2QXP1_ORYSJ Zinc finger, C3HC4 type family protein,
expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os12g05370 PE=4 SV=1
Length = 320

Score = 32.7 bits (73), Expect = 9.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1

Query: 205 SMNLAITIFGFVLSALFLMVICCRLLCSHSRQ 300
S ++ +T+ GF +S LF++ +C RL C+ R+
Sbjct: 7 SRSMVLTLLGFCVSVLFIVFVCSRLACALLRR 38


>tr|B8BM26|B8BM26_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37472 PE=4 SV=1
Length = 365

Score = 32.7 bits (73), Expect = 9.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1

Query: 205 SMNLAITIFGFVLSALFLMVICCRLLCSHSRQ 300
S ++ +T+ GF +S LF++ +C RL C+ R+
Sbjct: 7 SRSMVLTLLGFCVSVLFIVFVCSRLACALLRR 38