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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953836
Clone id TST39A01NGRL0018_N10
Library
Length 249
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_N10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGAACTTCTGCGTAAAATTGTCTGTGAGTGTGTAGAGAGGGAGATCGAGCAGGAATGGCC
GCCGCGTACTGCTGCCACATCTCTTGCTTCGTCCTTCTTGGGCACCCAGGAGCTCTCAAA
CGGCGTCAAGAGCGTGGGAGTGAGCAATGGGGCGCGTGTGGTATCGAGGTTTGGGGGCAA
GAATGGTGCGAAAGCAGCGCCCAGGAAGATCAGCTCCTCAGGCAGCAAGGATCGGCCTCT
GTGGTACCC
■■Homology search results ■■ -
sp_hit_id Q9XF88
Definition sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana
Align length 60
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953836|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N10, 5'
         (249 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...    34   0.20 
sp|Q96GA7|SDSL_HUMAN Serine dehydratase-like OS=Homo sapiens GN=...    33   0.57 
sp|O60299|K0552_HUMAN Uncharacterized protein KIAA0552 OS=Homo s...    32   1.3  
sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...    32   1.3  
sp|Q8R238|SDSL_MOUSE Serine dehydratase-like OS=Mus musculus GN=...    30   2.8  
sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase AthI OS...    30   2.9  
sp|A9VF06|IOLA1_BACWK Methylmalonate semialdehyde dehydrogenase ...    30   3.7  
sp|Q65IX1|IOLA1_BACLD Methylmalonate semialdehyde dehydrogenase ...    30   3.7  
sp|Q54I10|MMSA_DICDI Probable methylmalonate-semialdehyde dehydr...    30   4.9  
sp|Q5AHB1|PAN1_CANAL Actin cytoskeleton-regulatory complex prote...    29   6.4  
sp|Q60YU0|LCMT1_CAEBR Probable leucine carboxyl methyltransferas...    29   8.3  
sp|Q68SA9|ATS7_MOUSE A disintegrin and metalloproteinase with th...    29   8.3  
sp|P50947|PHO23_YEAST Transcriptional regulatory protein PHO23 O...    29   8.3  
sp|Q5WH11|IOLA2_BACSK Methylmalonate semialdehyde dehydrogenase ...    29   8.3  

>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 22/60 (36%), Positives = 33/60 (55%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSGSKDRPLWY 247
           T+  + ASS +GT+ +S+       SN +R  +RFG   G K A  K + +   DRPLW+
Sbjct: 4   TSTAAAASSIMGTRVVSDIS-----SNSSRFTARFGF--GTKKASPKKAKTVISDRPLWF 56


>sp|Q96GA7|SDSL_HUMAN Serine dehydratase-like OS=Homo sapiens
           GN=SDSL PE=1 SV=1
          Length = 329

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = +1

Query: 28  VCREGDRAGMAAAYCCH---ISCFVLLGHPGAL---KRRQERGSEQWGACGIEVWGQEWC 189
           VC  G  AG+AAAY      I   ++L    +L   +R Q  G+E      +++ G+ W 
Sbjct: 68  VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAE------VQLTGKVWD 121

Query: 190 ESSAQEDQLLRQQGSASVVP 249
           E++ +  +L ++ G  +V P
Sbjct: 122 EANLRAQELAKRDGWENVPP 141


>sp|O60299|K0552_HUMAN Uncharacterized protein KIAA0552 OS=Homo
           sapiens GN=KIAA0552 PE=2 SV=1
          Length = 673

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 62  PRTAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSGSKDRP 238
           PR A  S+ S     QE +  +KSVG   G       GG  G+   PR   S  S++RP
Sbjct: 33  PRLAMGSVGSGVAHAQEFA--MKSVGTRTGG------GGSQGSFPGPRGSGSGASRERP 83


>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSG-SKDRPLW 244
           +AA + ASS +GT+       + G+  G+   +   G    KAAP+K +    + DRPLW
Sbjct: 5   SAAAAAASSIMGTRV------APGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLW 58

Query: 245 Y 247
           Y
Sbjct: 59  Y 59


>sp|Q8R238|SDSL_MOUSE Serine dehydratase-like OS=Mus musculus
           GN=Sdsl PE=2 SV=1
          Length = 329

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 28  VCREGDRAGMAAAYCCH-ISCFVLLGHPGALKRRQERGSEQWGACGIEVWGQEWCESSAQ 204
           VC  G  AG+AAAY    +   V +  P     +  R  E  GA  +++ G+ W E++ +
Sbjct: 68  VCSSGGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGA-EVQLTGKVWDEANVK 126

Query: 205 EDQLLRQQGSASVVP 249
             +L  + G  +V P
Sbjct: 127 AQELATRDGWVNVSP 141


>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase AthI
            OS=Arabidopsis thaliana GN=ATHIM PE=2 SV=1
          Length = 1534

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 5    LLRKIVCECVEREIEQEW-----PPRTAATSLASSFLGTQELSNGVKSVGVSN 148
            LLRK   + VE EIE E      PP+    +    F G   LS+G+K  GVS+
Sbjct: 1064 LLRKKKGKGVESEIESEIVKPVEPPKEIRLATLDIFAGCGGLSHGLKKAGVSD 1116


>sp|A9VF06|IOLA1_BACWK Methylmalonate semialdehyde dehydrogenase
           [acylating] 1 OS=Bacillus weihenstephanensis (strain
           KBAB4) GN=iolA1 PE=3 SV=1
          Length = 486

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 86  ASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAP 202
           A SF+G++ ++  V   G  NG RV +  G KN A   P
Sbjct: 225 AVSFVGSEPVARYVYETGTKNGKRVQALAGAKNHAVVMP 263


>sp|Q65IX1|IOLA1_BACLD Methylmalonate semialdehyde dehydrogenase
           [acylating] 1 OS=Bacillus licheniformis (strain DSM 13 /
           ATCC 14580) GN=iolA1 PE=3 SV=1
          Length = 484

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 86  ASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAP 202
           A SF+G++ ++  V   G +NG RV +  G KN A   P
Sbjct: 225 AVSFVGSEPVAKYVYQTGTANGKRVQALAGAKNHAIVMP 263


>sp|Q54I10|MMSA_DICDI Probable methylmalonate-semialdehyde
           dehydrogenase [acylating], mitochondrial
           OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1
          Length = 528

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 86  ASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAP 202
           A SF+G  +    + + G +NG RV S    KN A   P
Sbjct: 246 AISFVGADQAGRHIHARGTANGKRVQSNMAAKNHATIVP 284


>sp|Q5AHB1|PAN1_CANAL Actin cytoskeleton-regulatory complex protein
            PAN1 OS=Candida albicans GN=PAN1 PE=3 SV=1
          Length = 1397

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 35   EREIEQEWPPRTAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKIS 214
            E E E+E P R  A  LAS   G         S  ++N A  VS    +N  + A   +S
Sbjct: 1200 EEESEEESPNRAGAAKLASLLFGGMPQPPTTSSSSLNNDAEKVSEQEHENAKQVASTPLS 1259

Query: 215  S 217
            +
Sbjct: 1260 N 1260
tr_hit_id Q9XQB2
Definition tr|Q9XQB2|Q9XQB2_PHAAU Chlorophyll a/b binding protein CP29 OS=Phaseolus aureus
Align length 60
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953836|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_N10, 5'
         (249 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XQB2|Q9XQB2_PHAAU Chlorophyll a/b binding protein CP29 OS=P...    49   2e-04
tr|B7SB30|B7SB30_BAMOL LHCB4 OS=Bambusa oldhamii PE=2 SV=1             42   0.016
tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medic...    41   0.026
tr|A9U3M1|A9U3M1_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A9PIZ2|A9PIZ2_POPJC Putative uncharacterized protein OS=Popul...    40   0.059
tr|O24561|O24561_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.10 
tr|B7SAW1|B7SAW1_9POAL Chloroplast chlorophyll a/b binding prote...    39   0.10 
tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subs...    39   0.17 
tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...    39   0.17 
tr|A3BL40|A3BL40_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A2YML1|A2YML1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|Q0PWS7|Q0PWS7_TOBAC Chloroplast pigment-binding protein CP29 ...    38   0.29 
tr|A9T2F8|A9T2F8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A7PP40|A7PP40_VITVI Chromosome chr8 scaffold_23, whole genome...    36   0.85 
tr|A5C288|A5C288_VITVI Putative uncharacterized protein OS=Vitis...    36   0.85 
tr|B4FJG1|B4FJG1_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|A8NLG7|A8NLG7_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   1.5  
tr|Q5M8H3|Q5M8H3_XENTR Serine dehydratase-like OS=Xenopus tropic...    34   3.2  
tr|Q6BTC6|Q6BTC6_DEBHA DEHA2D01738p OS=Debaryomyces hansenii GN=...    34   3.2  
tr|Q19852|Q19852_CAEEL Putative uncharacterized protein F28B4.2 ...    34   3.2  
tr|O04822|O04822_SPOST Putative uncharacterized protein (Fragmen...    34   4.2  
tr|B4IY32|B4IY32_DROGR GH14621 OS=Drosophila grimshawi GN=GH1462...    28   4.7  
tr|Q4DLQ0|Q4DLQ0_TRYCR Putative uncharacterized protein OS=Trypa...    33   5.5  
tr|Q6PAE9|Q6PAE9_XENLA MGC68790 protein OS=Xenopus laevis GN=sds...    33   7.2  
tr|Q0BHY9|Q0BHY9_BURCM Putative uncharacterized protein OS=Burkh...    33   7.2  
tr|B1YTW5|B1YTW5_BURA4 Tol-pal system protein YbgF OS=Burkholder...    33   7.2  
tr|A4JBT9|A4JBT9_BURVG Putative uncharacterized protein OS=Burkh...    33   7.2  
tr|B1TDD7|B1TDD7_9BURK Tol-pal system protein YbgF OS=Burkholder...    33   7.2  
tr|B1FJA5|B1FJA5_9BURK Tol-pal system protein YbgF OS=Burkholder...    33   7.2  

>tr|Q9XQB2|Q9XQB2_PHAAU Chlorophyll a/b binding protein CP29
           OS=Phaseolus aureus GN=CipCp29 PE=2 SV=1
          Length = 290

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 34/60 (56%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSGSKDRPLWY 247
           TA  +  SSF+GT+ L         S   R+ +RFG  +  KAAP+K+S   S DRPLWY
Sbjct: 5   TATAAATSSFMGTRLLD------AHSGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWY 58


>tr|B7SB30|B7SB30_BAMOL LHCB4 OS=Bambusa oldhamii PE=2 SV=1
          Length = 287

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 24/60 (40%), Positives = 37/60 (61%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSGSKDRPLWY 247
           ++  + AS+FLGT+     +      NG R+V+RFG   G KAAP+K + + + DRPLW+
Sbjct: 3   SSVAAAASTFLGTR-----LADPAPQNG-RIVARFGF-GGKKAAPKKAARTSTSDRPLWF 55


>tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFG-GKNGAKAAPRKIS-SSGSKDRPL 241
           TA  +  SSF+GT+     ++ V  SN  R+ +RFG GK   KAAP+K S SS S DRPL
Sbjct: 5   TATAAATSSFIGTR-----LREVQ-SNSGRIQARFGFGKK--KAAPKKPSRSSPSTDRPL 56

Query: 242 WY 247
           W+
Sbjct: 57  WF 58


>tr|A9U3M1|A9U3M1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_228001 PE=4 SV=1
          Length = 296

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
 Frame = +2

Query: 71  AATSLASSFLGTQELSNGVKSVGVSNGARVVSR--FGG--KNGAKAAPR--KISSSGSKD 232
           +A+  ASSF+G+      V+  GV NGARVV+R   GG  K  AK A +  K SS    D
Sbjct: 7   SASIAASSFVGS------VECFGVKNGARVVARSSLGGKAKQVAKQASKTLKKSSGAGAD 60

Query: 233 RPLWY 247
           RPLW+
Sbjct: 61  RPLWF 65


>tr|A9PIZ2|A9PIZ2_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 285

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 24/60 (40%), Positives = 33/60 (55%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKISSSGSKDRPLWY 247
           T A +  SSF+GT+     +  +  SN  R+ +RFG   G K AP+K     + DRPLWY
Sbjct: 4   TTAAAATSSFMGTR-----LPDI-YSNSGRIQARFGF--GGKKAPKKSIKPSTPDRPLWY 55


>tr|O24561|O24561_MAIZE Putative uncharacterized protein OS=Zea mays
           GN=Lhcb4*1 PE=2 SV=1
          Length = 291

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKA--APRKIS-SSGSKDRP 238
           ++  + AS+FLGT+     +      NG R+V+RFG   G KA  AP+K++ +S S DRP
Sbjct: 3   SSVAAAASTFLGTR-----LADPAPQNG-RIVARFGFGLGGKAKPAPKKVAKTSTSSDRP 56

Query: 239 LWY 247
           LW+
Sbjct: 57  LWF 59


>tr|B7SAW1|B7SAW1_9POAL Chloroplast chlorophyll a/b binding protein
           cab-PhE7 OS=Phyllostachys edulis PE=2 SV=1
          Length = 287

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFG-GKNGAKAAPRKISSSGSKDRPLW 244
           ++  + AS+FLGT+     +      NG R+V+RFG G+   KAAP+K + + + DRPLW
Sbjct: 3   SSVAAAASTFLGTR-----LADPAPQNG-RIVARFGFGRK--KAAPKKAARTSTSDRPLW 54

Query: 245 Y 247
           +
Sbjct: 55  F 55


>tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subsp.
           japonica GN=P0567H04.14 PE=2 SV=1
          Length = 290

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKIS--SSGSKDRPL 241
           ++  + AS+FLGT+      +S       R+V+RFG   G KAA +K +  S+ + DRPL
Sbjct: 3   SSVAAAASTFLGTRLADPAPQS------GRIVARFGFGGGKKAAAKKAARPSAPTTDRPL 56

Query: 242 WY 247
           W+
Sbjct: 57  WF 58


>tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza
           sativa GN=RCABP69 PE=2 SV=1
          Length = 290

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKIS--SSGSKDRPL 241
           ++  + AS+FLGT+      +S       R+V+RFG   G KAA +K +  S+ + DRPL
Sbjct: 3   SSVAAAASTFLGTRLADPAPQS------GRIVARFGFGGGKKAAAKKAARPSAPTTDRPL 56

Query: 242 WY 247
           W+
Sbjct: 57  WF 58


>tr|A3BL40|A3BL40_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023762 PE=4 SV=1
          Length = 267

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = +2

Query: 68  TAATSLASSFLGTQELSNGVKSVGVSNGARVVSRFGGKNGAKAAPRKIS--SSGSKDRPL 241
           ++  + AS+FLGT+      +S       R+V+RFG   G KAA +K +  S+ + DRPL
Sbjct: 3   SSVAAAASTFLGTRLADPAPQS------GRIVARFGFGGGKKAAAKKAARPSAPTTDRPL 56

Query: 242 WY 247
           W+
Sbjct: 57  WF 58