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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953857
Clone id TST39A01NGRL0018_O08
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_O08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCACTCTTAGTGGTGCTCACTCGCTCTTTAAACACACAATCAGCAGTCATGCAGTCGAG
AGTGGTAATACAGGGAATATTCGTTCGAGATGCTTTCTCGTTTCTGACATTAGAGTGAAC
CTTTCCCTGAAGATAGCATCTATTGAAATCTGCACTCTCACTGGCTTTTCTTACCGCAGA
GATTGTATTCATCATATAAGTGCAGATCCTTGCAGCAGGCGTAGAGAATATGTCACTTCT
TCCCCATCTTCTCACCATACATTTTGTACTGCTGAACCCCAGAACCGCTCAAATCATGGA
GACTCCGATTCGGGTTCCGACGGTGATTGCGAACCCGATCCTAATCCCGATTCCAAGCGG
CCGCAGCAGGATTCCACAAGCATGCGGCATCAAATGGAAACCCTCAAGGAAGCTGTCTCC
CCTGTTCTGTCAAATTCCTCAGAGCGCTTAGAGCCCGAAAGCTGGACGCTGATAGATGGA
GAAGACGCACCCACCGTGGTTTCCACTCTACCAATGACTAAGAGATACGCGCCTCGTCGG
CTCCTCGAATTCATCGCAAAGAAGGTAGACTCCAAAATGTTTTCACCAGCACAACTGAAG
AAGGCACTTATGTTCTGGCAAAAG
■■Homology search results ■■ -
sp_hit_id P20024
Definition sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays
Align length 98
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953857|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_O08, 5'
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1     33   1.6  
sp|P03028|NIFA_RHIME Nif-specific regulatory protein OS=Rhizobiu...    32   2.6  
sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizos...    32   3.5  
sp|Q8BD28|NCAP_CPXVB Nucleoprotein OS=Cupixi virus (isolate Rat/...    30   7.7  
sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=P...    30   7.7  
sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase OS=P...    30   7.7  
sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase OS=P...    30   7.7  

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1
          Length = 340

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +1

Query: 199 SADPCSRRREYVTSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDST 378
           S D C   RE   +        CT +P++               +P P+P S      S+
Sbjct: 159 SGDQCGTSREPDATD------VCTLQPEDMDVSDMLVDGAPPAAQPMPSPSS------SS 206

Query: 379 SMRHQMETLKEAVS-PVLSNSSERLEPESWTLIDGEDA 489
           S+   +  ++E +  PV+      +EPE W++IDGE A
Sbjct: 207 SLTTCVGGVEELIELPVID-----IEPEIWSIIDGESA 239


>sp|P03028|NIFA_RHIME Nif-specific regulatory protein OS=Rhizobium
           meliloti GN=nifA PE=4 SV=1
          Length = 541

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
 Frame = -2

Query: 599 FSCAG--ENILESTFFAMNSRSRRGAYLLVIGRVETT---------VGASSPSISVQLSG 453
           F+C    E++LES  F     +  GA    +GR E+          +G   P+   +L  
Sbjct: 255 FNCPALSESLLESELFGHEKGAFTGAIAQRVGRFESANGGTLLLDEIGEIPPAFQAKLLR 314

Query: 452 SKRSEEFDRTGETASLRVSI 393
             +  EF+R G T +L+V +
Sbjct: 315 VIQEGEFERVGGTKTLKVDV 334


>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1
            OS=Schizosaccharomyces pombe GN=mit1 PE=1 SV=1
          Length = 1418

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +1

Query: 22   SLFKHTISSHAVESGNTGNIRSRCFLVSDIRVNLSLKIASIEICTLTG---FSYRRDCIH 192
            SL K  + +  + S  + N+R RC  +  +  +  L I  +EIC L G   FS R  C  
Sbjct: 1290 SLSKAVLDNFFLLSSLSDNVRCRCCGIKHLPAHCPLSIVPLEICFLCGTPHFSGRDTCPM 1349

Query: 193  HISADPCSRRREYVTSSPSSHH 258
              + +   R ++ ++ S    H
Sbjct: 1350 LRNKEAIYRLKDSLSKSREPFH 1371


>sp|Q8BD28|NCAP_CPXVB Nucleoprotein OS=Cupixi virus (isolate
           Rat/Brasil/BeAn 119303/1970) GN=N PE=3 SV=1
          Length = 560

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 334 PDPNPDSKRPQQDSTSMRHQMETLKEAVSPVLSNSSERLEPESWTLIDGEDAPT 495
           P P+P  + P+++  ++R  +  L E    V+  + ++L+P +   +D E  PT
Sbjct: 335 PKPDPGPRAPEKNGQNLR--LSNLTEMQEAVIKEAMQKLDPTNTIWMDIEGPPT 386


>sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1
          Length = 627

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 472 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQL 597
           IDG D PT+V+TL   +     + L  + KK   K F+PA+L
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAEL 300


>sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs
           PE=3 SV=1
          Length = 627

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 472 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQL 597
           IDG D PT+V+TL   +     + L  + KK   K F+PA+L
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAEL 300


>sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1
          Length = 627

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 472 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQL 597
           IDG D PT+V+TL   +     + L  + KK   K F+PA+L
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAEL 300
tr_hit_id Q1D4K8
Definition tr|Q1D4K8|Q1D4K8_MYXXD Sigma-54 dependent DNA-binding response regulator OS=Myxococcus xanthus (strain DK 1622)
Align length 73
Score (bit) 37.4
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953857|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_O08, 5'
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1D4K8|Q1D4K8_MYXXD Sigma-54 dependent DNA-binding response r...    37   0.73 
tr|Q6VMS0|Q6VMS0_MYXXA Mutant NtrC-like activator (Fragment) OS=...    37   0.73 
tr|B8QZT6|B8QZT6_MYXFU Sigma-54 dependent DNA-binding response r...    37   0.73 
tr|A4R487|A4R487_MAGGR Putative uncharacterized protein OS=Magna...    29   2.6  
tr|Q6WCS4|Q6WCS4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1    35   3.7  
tr|Q6WCS3|Q6WCS3_9MONO G protein OS=Human metapneumovirus PE=4 SV=1    35   3.7  
tr|Q6RYW2|Q6RYW2_9MONO Attachment glycoprotein OS=Human metapneu...    35   3.7  
tr|Q6RYW1|Q6RYW1_9MONO Attachment glycoprotein OS=Human metapneu...    35   3.7  
tr|Q6RYU5|Q6RYU5_9MONO Attachment glycoprotein OS=Human metapneu...    35   3.7  
tr|A5CX37|A5CX37_VESOH 1-deoxy-D-xylulose-5-phosphate synthase O...    35   3.7  
tr|B8FJT8|B8FJT8_9DELT Two component, sigma54 specific, transcri...    35   4.7  
tr|B2AL46|B2AL46_PODAN Predicted CDS Pa_5_8680 OS=Podospora anse...    28   5.6  
tr|Q6WB94|Q6WB94_9MONO Attachment glycoprotein G OS=Human metapn...    34   6.2  
tr|B6JYU1|B6JYU1_SCHJP Predicted protein OS=Schizosaccharomyces ...    34   6.2  
tr|B6ARC7|B6ARC7_9BACT Sigma54-specific transcriptional regulato...    34   8.0  
tr|A3ESE7|A3ESE7_9BACT Transcriptional regulator OS=Leptospirill...    34   8.0  
tr|Q6WCT3|Q6WCT3_9MONO G protein OS=Human metapneumovirus PE=4 SV=1    34   8.1  
tr|Q4KTK0|Q4KTK0_9MONO Attachment glycoprotein (Fragment) OS=Hum...    34   8.1  
tr|Q4KTJ7|Q4KTJ7_9MONO Attachment glycoprotein (Fragment) OS=Hum...    34   8.1  
tr|A5ES96|A5ES96_BRASB Putative uncharacterized protein OS=Brady...    34   8.1  
tr|A1AW48|A1AW48_RUTMC 1-Deoxy-D-xylulose-5-phosphate synthase O...    34   8.1  

>tr|Q1D4K8|Q1D4K8_MYXXD Sigma-54 dependent DNA-binding response
           regulator OS=Myxococcus xanthus (strain DK 1622)
           GN=MXAN_4240 PE=4 SV=1
          Length = 471

 Score = 37.4 bits (85), Expect = 0.73
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = -2

Query: 584 ENILESTFFAMNSRSRRGAYLLVIGRVETT---------VGASSPSISVQLSGSKRSEEF 432
           EN+LES  F     S  GA     GR E           +G  SP++ V+L    +  EF
Sbjct: 207 ENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREF 266

Query: 431 DRTGETASLRVSI 393
           +R G T +L+V +
Sbjct: 267 ERVGGTQTLKVDV 279


>tr|Q6VMS0|Q6VMS0_MYXXA Mutant NtrC-like activator (Fragment)
           OS=Myxococcus xanthus PE=4 SV=1
          Length = 471

 Score = 37.4 bits (85), Expect = 0.73
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = -2

Query: 584 ENILESTFFAMNSRSRRGAYLLVIGRVETT---------VGASSPSISVQLSGSKRSEEF 432
           EN+LES  F     S  GA     GR E           +G  SP++ V+L    +  EF
Sbjct: 207 ENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREF 266

Query: 431 DRTGETASLRVSI 393
           +R G T +L+V +
Sbjct: 267 ERVGGTQTLKVDV 279


>tr|B8QZT6|B8QZT6_MYXFU Sigma-54 dependent DNA-binding response
           regulator OS=Myxococcus fulvus HW-1 PE=4 SV=1
          Length = 471

 Score = 37.4 bits (85), Expect = 0.73
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = -2

Query: 584 ENILESTFFAMNSRSRRGAYLLVIGRVETT---------VGASSPSISVQLSGSKRSEEF 432
           EN+LES  F     S  GA     GR E           +G  SP++ V+L    +  EF
Sbjct: 207 ENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREF 266

Query: 431 DRTGETASLRVSI 393
           +R G T +L+V +
Sbjct: 267 ERVGGTQTLKVDV 279


>tr|A4R487|A4R487_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_03846 PE=4 SV=1
          Length = 752

 Score = 28.9 bits (63), Expect(2) = 2.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 239 LPHLLTIHFVLLNPRTAQIMETPIRVPTVIANPILIPIPSGRSRIPQACGIKW 397
           LP  +T      NP+  +I+E  + + T IAN  L  I  G    P   GI+W
Sbjct: 253 LPRGVTAEQAAANPQVQEIIEPRLAMLTDIANGFLSTIIDGLEEAPY--GIRW 303



 Score = 25.8 bits (55), Expect(2) = 2.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 454 PESWTLIDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALM 612
           P+S+ LIDG+ A              PRR L  IAK + +    P+  K+  M
Sbjct: 344 PKSYMLIDGQPADK------------PRRTLTLIAKMLQNLANKPSYAKEPYM 384


>tr|Q6WCS4|Q6WCS4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1
          Length = 228

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 29/96 (30%), Positives = 39/96 (40%)
 Frame = +1

Query: 235 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 414
           T+S S HHT   + P   SN             PD NP+S+ P Q ST    +  TL  A
Sbjct: 58  TTSESEHHT---SSPPTESNKEASTISTD---NPDINPNSQHPTQQST----ENPTLNPA 107

Query: 415 VSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTK 522
            S   S +     P++   +   D  TV  +   TK
Sbjct: 108 ASASPSETESASTPDTTNRLSSVDRSTVQPSENRTK 143


>tr|Q6WCS3|Q6WCS3_9MONO G protein OS=Human metapneumovirus PE=4 SV=1
          Length = 228

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 29/96 (30%), Positives = 39/96 (40%)
 Frame = +1

Query: 235 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 414
           T+S S HHT   + P   SN             PD NP+S+ P Q ST    +  TL  A
Sbjct: 58  TTSESEHHT---SSPPTESNKEASTISTD---NPDINPNSQHPTQQST----ENPTLNPA 107

Query: 415 VSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTK 522
            S   S +     P++   +   D  TV  +   TK
Sbjct: 108 ASASPSETESASTPDTTNRLSSVDRSTVQPSENRTK 143


>tr|Q6RYW2|Q6RYW2_9MONO Attachment glycoprotein OS=Human
           metapneumovirus PE=4 SV=1
          Length = 217

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 29/96 (30%), Positives = 39/96 (40%)
 Frame = +1

Query: 235 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 414
           T+S S HHT   + P   SN             PD NP+S+ P Q ST    +  TL  A
Sbjct: 58  TTSESEHHT---SSPPTESNKEASTISTD---NPDINPNSQHPTQQST----ENPTLNPA 107

Query: 415 VSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTK 522
           VS   S +     P++   +   D  T   +   TK
Sbjct: 108 VSTSPSETEPTSTPDTTNRLSSVDRSTAQPSESRTK 143


>tr|Q6RYW1|Q6RYW1_9MONO Attachment glycoprotein OS=Human
           metapneumovirus PE=4 SV=1
          Length = 217

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 29/96 (30%), Positives = 39/96 (40%)
 Frame = +1

Query: 235 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 414
           T+S S HHT   + P   SN             PD NP+S+ P Q ST    +  TL  A
Sbjct: 58  TTSESEHHT---SSPPTESNKEASTISTD---NPDINPNSQHPTQQST----ENPTLNPA 107

Query: 415 VSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTK 522
           VS   S +     P++   +   D  T   +   TK
Sbjct: 108 VSTSPSETEPTSTPDTTNRLSSVDRSTAQPSESRTK 143


>tr|Q6RYU5|Q6RYU5_9MONO Attachment glycoprotein OS=Human
           metapneumovirus PE=4 SV=1
          Length = 219

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 28/96 (29%), Positives = 39/96 (40%)
 Frame = +1

Query: 235 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 414
           T+S S HHT   + P   SN             PD NP+S+ P Q ST    +  TL  A
Sbjct: 58  TTSESEHHT---SSPPTESNKEASTISTD---NPDINPNSQHPTQQST----ENPTLNSA 107

Query: 415 VSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTK 522
            S   S + +   P++   +   D  T   +   TK
Sbjct: 108 ASASPSETEQASTPDTTNRLSSVDRSTAQPSESRTK 143


>tr|A5CX37|A5CX37_VESOH 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii
           (strain HA) GN=dxs PE=4 SV=1
          Length = 600

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 27/70 (38%), Positives = 34/70 (48%)
 Frame = +1

Query: 355 KRPQQDSTSMRHQMETLKEAVSPVLSNSSERLEPESWTLIDGEDAPTVVSTLPMTKRYAP 534
           K PQ    + R + E LK  V P  S   E L  + +  IDG D PT++ TL   K+   
Sbjct: 209 KIPQIHKFAKRSE-EHLKGMVLP--STLFEELGLDYFGPIDGHDLPTLIQTLKNLKKQTK 265

Query: 535 RRLLEFIAKK 564
            RLL  I KK
Sbjct: 266 PRLLHIITKK 275