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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953860
Clone id TST39A01NGRL0018_O11
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_O11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTAAGTGGTAGTCGACGAGCTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGTGGGAGA
GAGAGAGAGAGAGATGGCTTCCAGTAAGGGCATAGTCGCACTGTTCCTGGTGCTCATGGT
CTCTTTGGCCGGACTGATGGGTGCCGCCGCGCAGCCTCCTCCTCCGGCTCTGCAGTGCAC
TCCCCTGCTAAACCTTGTGCCGGCTTGCCAGGCTTTAACTCTCTTCCCCGCCCTTGCCCC
AGTGCTCACCTCCGTCTGCTGCAACGCTCTCTCCACCGCCAACCTCCTGGGCGTAGGACT
GGGTCCCAACGCCATCTGCCTCTGCGTGAAGCTCACCTTGCCCAACCTATCGCTCACCAC
CTGCCCTGGCCTCAGCATCGACCTCGCCCGCATCATCTTCGGCTCCAACGGAAGCTGCGT
CTGATCTCCTACATCGTCAGCCTGCAGCAGCTTCATGCAGTTCTGTTCATGTCTTGTTGT
ATTTCTGTATGCGGATTTTATGTTCTCCGCCATGCTAGCTCGTTTCTGTACTACCTTGTA
GATTTGGATTGATGCTTTGTTCTCTGGCCCTCTCTCCATCTGGTTGGACGTAGAGTTTTA
ATGATGA
■■Homology search results ■■ -
sp_hit_id Q8K3T3
Definition sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax judaei
Align length 38
Score (bit) 32.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_O11, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spala...    32   2.5  
sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 O...    32   3.3  
sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis ...    32   3.3  
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2    31   4.3  
sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo ...    30   9.6  

>sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax
            judaei GN=PER1 PE=2 SV=1
          Length = 1285

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 331  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 218
            L +E DG+G +    E GGGE     GG   G+GGEE+
Sbjct: 1212 LFSELDGLGLEP--MEEGGGEGGGGGGGGGEGEGGEEA 1247


>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4
           OS=Homo sapiens GN=TSPYL4 PE=2 SV=2
          Length = 414

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
 Frame = -2

Query: 588 SNQMERGPENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADD-------- 433
           S  +E+  E  A+++  KVVQK   +A  +K   R       NCM  L+A D        
Sbjct: 160 SAAVEKEGEAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINNCMDSLEAIDQELSNVNA 219

Query: 432 VGDQTQLPLEPKMMRARSM 376
             D+  L LE K  R R +
Sbjct: 220 QADRAFLQLERKFGRMRRL 238


>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis
           thaliana GN=TCP14 PE=2 SV=1
          Length = 489

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -1

Query: 295 YAQEVGGGESVAADGGEHWGK--------GGEES*SLASRHKV*QGSALQSRRRRLRGGT 140
           Y   V G  S A   G H+           G++  +  S H++ + S      R   GG 
Sbjct: 381 YRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGD 440

Query: 139 HQSGQRDHEHQEQ 101
           H + QR H HQ+Q
Sbjct: 441 HHNTQRHHHHQQQ 453


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
          Length = 2362

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -1

Query: 298 SYAQEVGGGESVAADGGEHWGKGGEES*S----LASRHKV*QGSALQSRRRRLRGGTHQS 131
           S +Q+ GGG   +   GEH    G  S S      SRH    G     R +    G H S
Sbjct: 577 SGSQQHGGGSGQSTGFGEHESSSGHSSSSGQHRSGSRHSSGSGKHESGRSQSSGSGHHGS 636

Query: 130 GQRDH 116
           G + H
Sbjct: 637 GSQQH 641


>sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo
            sapiens GN=PER1 PE=1 SV=2
          Length = 1290

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 331  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 218
            L +E DG+G +    E GGGE  ++ GG   G+G EE+
Sbjct: 1219 LFSELDGLGLEP--MEEGGGEQGSSGGGSGEGEGCEEA 1254
tr_hit_id Q3JSX2
Definition tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkholderia pseudomallei (strain 1710b)
Align length 75
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_O11, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkh...    35   2.6  
tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase...    35   2.6  
tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1 G...    35   2.6  
tr|A9TXH4|A9TXH4_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.4  
tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative O...    34   7.5  
tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria...    33   9.8  
tr|A9I3X2|A9I3X2_BORPD Transcriptional regulator, LysR-family OS...    33   9.8  
tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.8  
tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes scap...    33   9.8  
tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein OS=Magna...    33   9.8  

>tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_1933 PE=4 SV=1
          Length = 1038

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -1

Query: 289 QEVGGGESVAADGGEHWGK-----GGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSGQ 125
           +  G G   A DG E  G+     GG    +   RH+   G     RRR   G   ++G 
Sbjct: 582 ERAGDGRHEAGDGRERAGRARRAAGGAGECAGDRRHEARDGRERARRRRAAGGAGERAGD 641

Query: 124 RDHEHQEQCDYALTG 80
           R H+ +E+C+    G
Sbjct: 642 RRHDVRERCERGARG 656


>tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase
           OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
           SP-6) GN=Lcho_4311 PE=4 SV=1
          Length = 408

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 29/119 (24%), Positives = 49/119 (41%)
 Frame = -2

Query: 606 HH*NSTSNQMERGPENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADDVG 427
           HH  S      RG   K +  + +V++       NI    +      Q  ++ L   + G
Sbjct: 240 HHEQSDGGGYPRGV--KEASDLARVLRAADIYMANISPRAQRPALAPQVAVRQLFQQEQG 297

Query: 426 DQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQQTE 250
                P+   M+RA  +  PG VV  R G+++   R+ A GP+P    ++  R +   E
Sbjct: 298 S----PIATAMLRAIGIFPPGDVVQLRSGEIAVVTRRAAKGPAPLAASVSNARGVPVLE 352


>tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
           GN=SPV1_04568 PE=4 SV=1
          Length = 974

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -2

Query: 447 LQADDVGDQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVER 268
           +  D  GD      E +M  A   L PG  VSD  G V   QR+  L PS  P    V++
Sbjct: 790 MDIDIDGDGRVAGWEAEMQEATGTLEPGHRVSDPTGTVDHKQREADLDPSKQPALPHVDQ 849

Query: 267 ALQQTE 250
            +   E
Sbjct: 850 KISDAE 855


>tr|A9TXH4|A9TXH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172542 PE=4 SV=1
          Length = 361

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
 Frame = -2

Query: 591 TSNQMERGPENKASIQIYKVVQKR-ASMAENIKS------AYRNTTRHEQNCM------- 454
           TS    RG E K   ++ + ++ R AS+A++ +S      A+ +  +HE + +       
Sbjct: 2   TSGCGNRGIEPKGGAEMEESIEDRVASLAKSCRSLKEAASAHSSRWQHEADTLSKQAINH 61

Query: 453 ----KLLQAD--------DVGDQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMA 310
               K LQ D        ++  QT   LE ++ RAR+ML  G+V S    K +    +M 
Sbjct: 62  VSTLKKLQVDVGSASEKDEIDQQTADKLEEELYRARTMLYNGEVSSLLPAKANGVFLRML 121

Query: 309 LGPS 298
           LGP+
Sbjct: 122 LGPT 125


>tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative
           OS=Ixodes scapularis GN=IscW_ISCW016093 PE=4 SV=1
          Length = 527

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 230 ALAPVLTSVCCNALSTANLLGVGLGPNAICLCVKLTLPNLSLTTCPGLSIDLARIIFGSN 409
           AL P+L+S CC  L T  L   GLGP    L  K     L+ +   G  + L  ++ G N
Sbjct: 132 ALVPLLSSPCCFQLKTLLLNNNGLGPGGAELLAKALGACLAESRKAGTPLQLRTLVCGRN 191


>tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria
           rhizophila (strain ATCC 9341 / DSM 348 / NBRC 12708 /
           DC2201) GN=KRH_21790 PE=4 SV=1
          Length = 400

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 203 ACQALTLFPALAPVLTSVCCNALSTANLLGVGLGPNAICL----CVKLTLPNLSLT 358
           AC     F  + PV T+ C  ALS   LL + + P  +CL    CV  T   LS T
Sbjct: 49  ACWIPLFFRRVNPVATAYCVGALSLLGLLVLNVAPIGLCLWAVPCVVYTAAKLSPT 104


>tr|A9I3X2|A9I3X2_BORPD Transcriptional regulator, LysR-family
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet3879 PE=4 SV=1
          Length = 302

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 29/122 (23%), Positives = 53/122 (43%)
 Frame = -2

Query: 591 TSNQMERGPENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADDVGDQTQL 412
           T+ ++   P+  A  Q  K++  +   A+N  +A R+T R     ++++     G    +
Sbjct: 44  TTRRVSPTPDGLAFYQRCKLILDQLEEAKNEVTALRDTPR---GTLRVVLPVSYGKLWIM 100

Query: 411 PLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQQTEVSTGAR 232
           PL     +  + L     +SDRL  ++     +AL    T     V R L+Q+ + T A 
Sbjct: 101 PLLNSFAKRFAELTISVTLSDRLDDLTEDNFDVALSIGETTEARLVARKLRQSRIVTAAA 160

Query: 231 AG 226
            G
Sbjct: 161 PG 162


>tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 251

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -1

Query: 331 LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES*SLASRHKV*QGSALQSRRRRL 152
           ++   DG GT       GGG S +A  G     GG +S            S  +SRRRR+
Sbjct: 184 VYVTTDGNGTTDAGDADGGGGSPSAGSGSSGSSGGSKS-----------TSGAESRRRRM 232

Query: 151 RGG 143
            GG
Sbjct: 233 TGG 235


>tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes
           scapularis GN=IscW_ISCW005695 PE=4 SV=1
          Length = 235

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 13/49 (26%)
 Frame = +2

Query: 290 GVGLGPNAICLCVKLTLPNL---------SLTTCP----GLSIDLARII 397
           G+ + P+A   C+ +TLPN+         +L TCP    GL +DLARI+
Sbjct: 14  GLLISPSANAKCINVTLPNVLNLGSCLGPTLVTCPDTSDGLLVDLARIL 62


>tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_04405 PE=4 SV=1
          Length = 654

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
 Frame = -2

Query: 507 ENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLP-LEPKMMRARSMLRPGQVVSDRLGKVS 331
           EN++   R ++R +Q    +  A  + D    P L     +A S  + G+  S    K  
Sbjct: 316 ENLRPRSRPSSRQQQRKEPVQTAPSLDDAEAFPSLGAASAKATSKKQHGKRSSQGHHKEG 375

Query: 330 FTQRQMA----LGPSPTPRRLAVERALQQTEVSTGARAGKRVKAWQA 202
                +A    + PSPTP    V R + +T  ST  R G+   A Q+
Sbjct: 376 LISSSLADIVKMSPSPTPEAKLVSRKMGRTVSSTSIRNGENSAAAQS 422