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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953889
Clone id TST39A01NGRL0018_P16
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_P16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCGTAGCTGACCATCACTTAGCTTCGCTCTTCGCTGTGCTTTGCAAGTTTGCACAGCC
AAACGTGAGCAATACAAGTAAGCTGTTTACGCGAATCACACTCACCTGAACAACAAGTGG
TTAGTGCTGTGGAGTTCTCCTTCACCGTTTAGCTATGGCGAGTACCATGCAGAAGCTTCC
TGCATCCGCCTCCTCTTCTTACCACCACCGCGATGCCATCCTACCCTCTCGCAGCAGCCC
GTCATTGTCTTTGAGGATGCAGTTCGTTAAGGGTGAGGTGTTTGGGTACTCCCTCTCCCT
CCCGAAGGCGCTTGTCCCTGTCAGTCCCTTGAAATCTTTGAATGGCCCCATCCCTACCTG
CAACGTTGCCACAACAACAGCTCCAGCCAAAGAGGCAGGCAAAGTTAAAGTGAGACCTGA
TATCAGGAACATTGCTATCATTGCTCATGTGGGACCATGGGAAAACGACTTTGGTGGATG
CCATGCTGAAAACAG
■■Homology search results ■■ -
sp_hit_id P72749
Definition sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803)
Align length 13
Score (bit) 29.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953889|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_P16, 5'
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog OS=Sy...    29   1.2  
sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog OS=Bu...    26   4.4  
sp|Q8CNF2|GLCU_STAES Probable glucose uptake protein glcU OS=Sta...    30   6.1  
sp|Q5HLZ2|GLCU_STAEQ Probable glucose uptake protein glcU OS=Sta...    30   6.1  
sp|Q6PFY1|FCSD1_MOUSE FCH and double SH3 domains protein 1 OS=Mu...    30   7.9  
sp|Q9X1V8|LEPA_THEMA GTP-binding protein lepA OS=Thermotoga mari...    25   9.3  
sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog OS=He...    26   9.3  
sp|Q9ZLZ3|TYPA_HELPJ GTP-binding protein TypA/BipA homolog OS=He...    26   9.3  

>sp|P72749|TYPA_SYNY3 GTP-binding protein TypA/BipA homolog
           OS=Synechocystis sp. (strain PCC 6803) GN=typA PE=3 SV=1
          Length = 597

 Score = 29.3 bits (64), Expect(2) = 1.2
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDA+LK
Sbjct: 15  DHGKTTLVDALLK 27



 Score = 22.3 bits (46), Expect(2) = 1.2
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 422 IRNIAIIAHV 451
           IRN+AIIAHV
Sbjct: 5   IRNVAIIAHV 14


>sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog
           OS=Buchnera aphidicola subsp. Baizongia pistaciae
           GN=typA PE=3 SV=2
          Length = 611

 Score = 25.8 bits (55), Expect(2) = 4.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVD +L+
Sbjct: 19  DHGKTTLVDKLLQ 31



 Score = 23.9 bits (50), Expect(2) = 4.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 KVRPDIRNIAIIAHV 451
           K   ++RNIAIIAHV
Sbjct: 4   KTNKNLRNIAIIAHV 18


>sp|Q8CNF2|GLCU_STAES Probable glucose uptake protein glcU
           OS=Staphylococcus epidermidis (strain ATCC 12228)
           GN=glcU PE=3 SV=1
          Length = 287

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 432 MFLISGLTLTLPASLAGAVVVATLQVGMGPFKDFKGLT-GTSAFG 301
           M ++  L   LPA   G+VV+  + VG GP+   +G T GT   G
Sbjct: 1   MQIVDFLIALLPALFWGSVVIINVFVGGGPYNQIRGTTLGTLFIG 45


>sp|Q5HLZ2|GLCU_STAEQ Probable glucose uptake protein glcU
           OS=Staphylococcus epidermidis (strain ATCC 35984 /
           RP62A) GN=glcU PE=3 SV=1
          Length = 287

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 432 MFLISGLTLTLPASLAGAVVVATLQVGMGPFKDFKGLT-GTSAFG 301
           M ++  L   LPA   G+VV+  + VG GP+   +G T GT   G
Sbjct: 1   MQIVDFLIALLPALFWGSVVIINVFVGGGPYNQIRGTTLGTLFIG 45


>sp|Q6PFY1|FCSD1_MOUSE FCH and double SH3 domains protein 1 OS=Mus
           musculus GN=Fchsd1 PE=2 SV=1
          Length = 688

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 293 LSLPKALVPVSPLKSLNGPIPTCNVATTTAPAKEAGKV 406
           LS P+ ++P     S + P PTC +  +TAPA  + KV
Sbjct: 614 LSDPEQMLPSPSPPSFSPPAPTCALDGSTAPALPSDKV 651


>sp|Q9X1V8|LEPA_THEMA GTP-binding protein lepA OS=Thermotoga
           maritima GN=lepA PE=3 SV=1
          Length = 621

 Score = 25.4 bits (54), Expect(2) = 9.3
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVD +L+
Sbjct: 33  DHGKTTLVDRILE 45



 Score = 23.1 bits (48), Expect(2) = 9.3
 Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = +2

Query: 413 RPD-IRNIAIIAHV 451
           RPD IRNI IIAH+
Sbjct: 19  RPDLIRNICIIAHI 32


>sp|O25225|TYPA_HELPY GTP-binding protein TypA/BipA homolog
           OS=Helicobacter pylori GN=typA PE=3 SV=1
          Length = 599

 Score = 25.8 bits (55), Expect(2) = 9.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 453 DHGKTTLVDAML 488
           DHGKTTLVD +L
Sbjct: 14  DHGKTTLVDGLL 25



 Score = 22.7 bits (47), Expect(2) = 9.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 419 DIRNIAIIAHV 451
           +IRNIA+IAHV
Sbjct: 3   NIRNIAVIAHV 13


>sp|Q9ZLZ3|TYPA_HELPJ GTP-binding protein TypA/BipA homolog
           OS=Helicobacter pylori J99 GN=typA PE=3 SV=1
          Length = 599

 Score = 25.8 bits (55), Expect(2) = 9.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 453 DHGKTTLVDAML 488
           DHGKTTLVD +L
Sbjct: 14  DHGKTTLVDGLL 25



 Score = 22.7 bits (47), Expect(2) = 9.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 419 DIRNIAIIAHV 451
           +IRNIA+IAHV
Sbjct: 3   NIRNIAVIAHV 13
tr_hit_id A8JCK3
Definition tr|A8JCK3|A8JCK3_CHLRE GTP binding protein TypA OS=Chlamydomonas reinhardtii
Align length 35
Score (bit) 43.1
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953889|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_P16, 5'
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8JCK3|A8JCK3_CHLRE GTP binding protein TypA OS=Chlamydomonas...    43   6e-06
tr|Q6SYB1|Q6SYB1_TRIPR GTP-binding protein TypA OS=Trifolium pra...    41   3e-05
tr|A9PF30|A9PF30_POPTR Putative uncharacterized protein OS=Popul...    34   0.003
tr|A9YT54|A9YT54_SUASA Tyrosine phosphorylated protein A OS=Suae...    34   0.007
tr|Q00VH1|Q00VH1_OSTTA PREDICTED OJ1115_D03.25 gene product [Ory...    35   0.009
tr|Q7UQ85|Q7UQ85_RHOBA GTP-binding translation elongation factor...    34   0.041
tr|B5GDV1|B5GDV1_9ACTO GTP-binding elongation factor OS=Streptom...    30   0.11 
tr|A4F8G2|A4F8G2_SACEN GTP-binding elongation factor family prot...    30   0.11 
tr|B4U8A4|B4U8A4_HYDS0 GTP-binding protein TypA OS=Hydrogenobacu...    30   0.11 
tr|A9REI5|A9REI5_PHYPA Predicted protein OS=Physcomitrella paten...    29   0.15 
tr|A9WPA2|A9WPA2_RENSM GTP-binding protein OS=Renibacterium salm...    30   0.19 
tr|A4T905|A4T905_MYCGI GTP-binding protein TypA OS=Mycobacterium...    29   0.19 
tr|B0KAF5|B0KAF5_THEP3 GTP-binding protein TypA OS=Thermoanaerob...    30   0.19 
tr|B0K4E9|B0K4E9_THEPX GTP-binding protein TypA OS=Thermoanaerob...    30   0.19 
tr|A4X9J2|A4X9J2_SALTO GTP-binding protein TypA OS=Salinispora t...    29   0.24 
tr|Q8RBE0|Q8RBE0_THETN Predicted membrane GTPase involved in str...    30   0.25 
tr|B7R6I3|B7R6I3_9THEO GTP-binding protein TypA/BipA OS=Carboxyd...    30   0.25 
tr|Q2J677|Q2J677_FRASC GTP-binding protein TypA OS=Frankia sp. (...    29   0.32 
tr|B2V776|B2V776_SULSY GTP-binding protein TypA OS=Sulfurihydrog...    29   0.32 
tr|A7B955|A7B955_9ACTO Putative uncharacterized protein OS=Actin...    28   0.41 
tr|A1TDR5|A1TDR5_MYCVP GTP-binding protein TypA OS=Mycobacterium...    29   0.41 
tr|A8DJE1|A8DJE1_9BACT GTP-binding protein TypA/BipA OS=Candidat...    29   0.41 
tr|Q387N2|Q387N2_9TRYP Elongation factor, putative OS=Trypanosom...    28   0.52 
tr|Q03QM1|Q03QM1_LACBA Stress response membrane GTPase OS=Lactob...    30   0.53 
tr|Q49WN4|Q49WN4_STAS1 Putative GTPase OS=Staphylococcus saproph...    29   0.53 
tr|Q2B4W6|Q2B4W6_9BACI GTP-binding protein OS=Bacillus sp. NRRL ...    29   0.53 
tr|Q896E7|Q896E7_CLOTE GTP-binding protein lepA OS=Clostridium t...    30   0.53 
tr|A0JYS6|A0JYS6_ARTS2 GTP-binding protein TypA OS=Arthrobacter ...    30   0.68 
tr|B8HC84|B8HC84_9MICC GTP-binding protein TypA OS=Arthrobacter ...    30   0.68 
tr|Q8CWS6|Q8CWS6_STRR6 GTP-binding protein TypA/BipA (Tyrosine p...    29   0.68 

>tr|A8JCK3|A8JCK3_CHLRE GTP binding protein TypA OS=Chlamydomonas
           reinhardtii GN=GBA1 PE=4 SV=1
          Length = 683

 Score = 43.1 bits (100), Expect(2) = 6e-06
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 347 PIPTCNVATTTAPAKEAGKVKVRPDIRNIAIIAHV 451
           P+  C  AT  APA  + +  VR DIRNIAIIAHV
Sbjct: 61  PVTVCRTATVDAPASASSEGSVREDIRNIAIIAHV 95



 Score = 30.4 bits (67), Expect(2) = 6e-06
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAMLK
Sbjct: 96  DHGKTTLVDAMLK 108


>tr|Q6SYB1|Q6SYB1_TRIPR GTP-binding protein TypA OS=Trifolium
           pratense PE=2 SV=1
          Length = 676

 Score = 40.8 bits (94), Expect(2) = 3e-05
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +2

Query: 269 KGEVFGYSLSLPKALVPVSPLKSLNGPIPTCNVATTTAP-AKEAGKVKVRPDIRNIAIIA 445
           + ++FG SLS  K  + ++   +   PI  C+V+  T P  +E  K+  R DIRNIAI+A
Sbjct: 33  RNKLFGLSLSSSKPTLRIASRNNNINPIK-CSVSEVTEPITEEKRKLMRRADIRNIAIVA 91

Query: 446 HV 451
           HV
Sbjct: 92  HV 93



 Score = 30.4 bits (67), Expect(2) = 3e-05
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAMLK
Sbjct: 94  DHGKTTLVDAMLK 106


>tr|A9PF30|A9PF30_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 696

 Score = 33.9 bits (76), Expect(2) = 0.003
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +2

Query: 335 SLNGPIPTCNVATTTAPAKEAGKVKVRPDIRNIAIIAHV 451
           S + PI  C+V+T  +  ++  ++  R DIRNIAI+AHV
Sbjct: 60  SFHSPIK-CSVSTEASTTEKRSQMMRRGDIRNIAIVAHV 97



 Score = 30.4 bits (67), Expect(2) = 0.003
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAMLK
Sbjct: 98  DHGKTTLVDAMLK 110


>tr|A9YT54|A9YT54_SUASA Tyrosine phosphorylated protein A OS=Suaeda
           salsa GN=TypA PE=2 SV=1
          Length = 683

 Score = 33.9 bits (76), Expect(2) = 0.007
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 359 CNVATTTA--PAKEAGKVKVRPDIRNIAIIAHV 451
           C+ A T A  P+++ G++  R DIRNIAI+AHV
Sbjct: 68  CSAAGTAAATPSEKKGQLMRRNDIRNIAIVAHV 100



 Score = 29.3 bits (64), Expect(2) = 0.007
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVD+MLK
Sbjct: 101 DHGKTTLVDSMLK 113


>tr|Q00VH1|Q00VH1_OSTTA PREDICTED OJ1115_D03.25 gene product [Oryza
           sativa (ISS) OS=Ostreococcus tauri GN=Ot15g00380 PE=4
           SV=1
          Length = 629

 Score = 35.4 bits (80), Expect(2) = 0.009
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +2

Query: 383 PAKEAGKVKVRPDIRNIAIIAHV 451
           PA ++GK  VR +IRNIAIIAHV
Sbjct: 48  PAAQSGKATVRDEIRNIAIIAHV 70



 Score = 27.3 bits (59), Expect(2) = 0.009
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAML 488
           DHGKTTLVD+ML
Sbjct: 71  DHGKTTLVDSML 82


>tr|Q7UQ85|Q7UQ85_RHOBA GTP-binding translation elongation factor
           homolog OS=Rhodopirellula baltica GN=typA PE=4 SV=1
          Length = 640

 Score = 33.9 bits (76), Expect(2) = 0.041
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
 Frame = +2

Query: 350 IPTCNVATTTAPAKEAG-----KVKVRPDIRNIAIIAHV 451
           I +C +++T +P+++AG        VR +IRN+ IIAHV
Sbjct: 10  IESCPLSSTASPSQDAGTDTSSNTAVRDEIRNVVIIAHV 48



 Score = 26.6 bits (57), Expect(2) = 0.041
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVD +L+
Sbjct: 49  DHGKTTLVDCLLR 61


>tr|B5GDV1|B5GDV1_9ACTO GTP-binding elongation factor
           OS=Streptomyces sp. SPB74 GN=SSBG_02459 PE=4 SV=1
          Length = 648

 Score = 30.4 bits (67), Expect(2) = 0.11
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAMLK
Sbjct: 41  DHGKTTLVDAMLK 53



 Score = 28.5 bits (62), Expect(2) = 0.11
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 392 EAGKVKVRPDIRNIAIIAHV 451
           E+ +V  R DIRN+AI+AHV
Sbjct: 21  ESPQVPTRHDIRNVAIVAHV 40


>tr|A4F8G2|A4F8G2_SACEN GTP-binding elongation factor family protein
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=typA PE=4 SV=1
          Length = 641

 Score = 29.6 bits (65), Expect(2) = 0.11
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 368 ATTTAPAKEAGKVKVRPDIRNIAIIAHV 451
           AT+ AP ++     VR D+RN+AI+AHV
Sbjct: 3   ATSVAPTQQ-----VRSDLRNVAIVAHV 25



 Score = 29.3 bits (64), Expect(2) = 0.11
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAML+
Sbjct: 26  DHGKTTLVDAMLR 38


>tr|B4U8A4|B4U8A4_HYDS0 GTP-binding protein TypA OS=Hydrogenobaculum
           sp. (strain Y04AAS1) GN=HY04AAS1_0678 PE=4 SV=1
          Length = 594

 Score = 29.6 bits (65), Expect(2) = 0.11
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 404 VKVRPDIRNIAIIAHV 451
           +K+R DIRN+AIIAHV
Sbjct: 1   MKIREDIRNVAIIAHV 16



 Score = 29.3 bits (64), Expect(2) = 0.11
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDA+LK
Sbjct: 17  DHGKTTLVDALLK 29


>tr|A9REI5|A9REI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65080 PE=4 SV=1
          Length = 626

 Score = 29.3 bits (64), Expect(2) = 0.15
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 401 KVKVRPDIRNIAIIAHV 451
           K  VR D+RNIAI+AHV
Sbjct: 26  KTSVRTDVRNIAIVAHV 42



 Score = 29.3 bits (64), Expect(2) = 0.15
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 453 DHGKTTLVDAMLK 491
           DHGKTTLVDAML+
Sbjct: 43  DHGKTTLVDAMLR 55