DK953890
Clone id TST39A01NGRL0018_P17
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0018_P17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CCCTGTTGGGGGCAGTGCGCATGATGAGAGGAGGTTGGCTTATACATGTCAATCAAGTGA
TTCAGAATTCTCTGTTTCTTTGATTAGAGGCCTAATCCACACACACACACACACACACAC
AGAGCGAGAGAGAGAGAGGGACTCACTTTGCAAACTATATTGGGCCTATCCACCTGTGAA
TCTTCTGCTAGGAAGCTAGTTTGCCACTGAATGTGCAACTTATCCTTGTATGCACTCATC
ACAGCTTAATTCATGAGCTTTCTGCCTGTAGCGAGCTCTTTATGAGCTAATTTGCATTCA
ACGTCAGGCCCATTAAGCTGCCTGGCACATCAATTTATCAGAGCTTCATCTCTGCATCCA
GGTAATTCAACCACACCATGATCAACACAGCCTCCTCGAACATCCGTCTATGCGAGCTTC
TAATCGGCTGGGAAGCCCCACTGCGCGTGCACTTACTCTAATCTCGACTCCTCAGAACAG
CTCGATCAGCCTTGATTACTATTGGGCTCTTTCAGTCCACAGAAATTCCATGTATGAGGT
CTTTCAGCTCAATTGGGTTCGGTAATTGATCGGTGAAGCTGCCCCTTCAAGCT
■■Homology search results ■■ -
sp_hit_id Q8SX83
Definition sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster
Align length 44
Score (bit) 30.8
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953890|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_P17, 5'
(593 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogast... 31 5.3
sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3 30 7.0
sp|A4GYX4|YCF1_POPTR Putative membrane protein ycf1 OS=Populus t... 30 9.1
sp|Q14FA0|YCF1_POPAL Putative membrane protein ycf1 OS=Populus a... 30 9.1

>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster
GN=spen PE=1 SV=2
Length = 5560

Score = 30.8 bits (68), Expect = 5.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2

Query: 359 QVIQPHHDQHSLLEHPSMRASNRLGSPTARALTLISTPQNSSIS 490
Q +Q QH+L+ P + L SPT R L+ ++P S ++
Sbjct: 3686 QQVQQTQQQHALITSPQSSNISPLASPTTRVLSSSNSPTTSKVN 3729


>sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3
Length = 2699

Score = 30.4 bits (67), Expect = 7.0
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Frame = +2

Query: 356 IQVIQPHHDQHSLLEHPSMRASNR----------LGSPTARALTLISTPQNSSISLDYYW 505
+Q + P H QHS HPS+ + NR P A L +TP+ S+ L W
Sbjct: 182 LQPLPPSHKQHSAQHHPSITSLNRNSLTNRRNQSPAPPAALPAELQTTPE--SVQLQDSW 239

Query: 506 AL 511
L
Sbjct: 240 VL 241


>sp|A4GYX4|YCF1_POPTR Putative membrane protein ycf1 OS=Populus
trichocarpa GN=ycf1-A PE=3 SV=1
Length = 1822

Score = 30.0 bits (66), Expect = 9.1
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -2

Query: 547 LKDLIHGISVD*KSPIVIKADRAVLRSRD*SKCTRSGASQPIRSSHRRMFEEAVLIMVWL 368
LK++I+ S ++PI++ R V + T++ + PI + F ++ M W+
Sbjct: 972 LKEIINKFSKSKRNPILLFGFREVYELNE----TKNEKNSPINNRTIHKFSTSIRSMDWI 1027

Query: 367 NYLDAEMKL 341
NY E K+
Sbjct: 1028 NYSLTEKKM 1036


>sp|Q14FA0|YCF1_POPAL Putative membrane protein ycf1 OS=Populus alba
GN=ycf1 PE=3 SV=1
Length = 1820

Score = 30.0 bits (66), Expect = 9.1
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -2

Query: 547 LKDLIHGISVD*KSPIVIKADRAVLRSRD*SKCTRSGASQPIRSSHRRMFEEAVLIMVWL 368
LK++I+ S ++PI++ R V + T++ + PI + F ++ M W+
Sbjct: 970 LKEIINKFSKSKRNPILLFGFREVYELNE----TKNEKNSPINNRTIHKFSTSIRSMDWI 1025

Query: 367 NYLDAEMKL 341
NY E K+
Sbjct: 1026 NYSLTEKKM 1034


tr_hit_id A8ICX0
Definition tr|A8ICX0|A8ICX0_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 67
Score (bit) 38.1
E-value 0.38
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953890|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0018_P17, 5'
(593 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8ICX0|A8ICX0_CHLRE Predicted protein OS=Chlamydomonas reinha... 38 0.38
tr|A7QRQ7|A7QRQ7_VITVI Chromosome chr13 scaffold_152, whole geno... 36 1.9
tr|A5AM78|A5AM78_VITVI Putative uncharacterized protein OS=Vitis... 33 9.4

>tr|A8ICX0|A8ICX0_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_186368 PE=4 SV=1
Length = 982

Score = 38.1 bits (87), Expect = 0.38
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2

Query: 335 LSELHLCIQVIQPHHDQHSLLEHPSMRASNRLGSPTARALTLISTPQNSSISLDYYWALS 514
+S + L QV++ +QH + P MRAS R+ +P+A L+++ + Y+A+
Sbjct: 781 ISAVSLVTQVLRVAGEQHGVFATPPMRASLRISNPSASMLSVL-------CQTNTYFAVE 833

Query: 515 VHRNSMY 535
H N++Y
Sbjct: 834 PHHNTLY 840


>tr|A7QRQ7|A7QRQ7_VITVI Chromosome chr13 scaffold_152, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00005457001
PE=4 SV=1
Length = 210

Score = 35.8 bits (81), Expect = 1.9
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +2

Query: 317 AAWHINLSELHLCIQVIQPHHDQHSLLEHPSMRASNRLGSPTARALTLISTPQNSSISLD 496
A W + HL + +Q HH S+L P MRASNR+ S R TL+S P
Sbjct: 120 ADWQLKAEISHLLLVFLQRHHHSLSIL-GPLMRASNRMAS--FRMATLLS-PLPKPTCST 175

Query: 497 YYWALSVHRNSMYEVF 544
Y+ A + R S+ ++
Sbjct: 176 YFHACTQWRVSLMHIY 191


>tr|A5AM78|A5AM78_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_005876 PE=4 SV=1
Length = 2051

Score = 33.5 bits (75), Expect = 9.4
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2

Query: 317 AAWHINLSELHLCIQVIQPHHDQHSLLEHPSMRASNRLGSPTARALTLIS 466
A W + HL + +Q HH S+L P MRASNR+ S R TL+S
Sbjct: 115 ADWQLKAEISHLLLVFLQRHHHSLSIL-GPLMRASNRMAS--FRMATLLS 161