NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953900
Clone id TST39A01NGRL0019_A04
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_A04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAGCTTATACACCTATCCTCCAGGTTCAAGCCTGTGTGGCCATGGCGACCTCGTACATA
TTGCGTCCTCTATGCACTTCACACCTCCTATATCCAACACCGTCTTCCGAAGACAGAGTT
TGTTGCTGCAATGGTCTGCGGGGCAGAAGAAGGGCTGTGCTGCGCCCAACTCTTATCCTG
TCCTGCCCTCGCGACTGTAGTCTGCGTAGCGACTTCTCTCTACTCTCGGTTAAGCTCACG
TCCTCGACTGCACGATTCAGTGGAGTGATTCTCTCTCAAGGTAACTTCACAGGGCAAGCA
AATGCAGTAGCTGATGCAAATGTCAGCGCAACGTTCAGCAATCCGCTTGTTGAAACACAG
CCTCTTTTGGATGCAAGCTCTACAGATTCTAATGGTAGCGCCAGCCCCAGTCCCAGTCCC
GCTGCAGACTCAGGGCCTGATTTTGGCCCTGAATTTGATTATCAGGTTTATGCTGCTAAT
AACCATGATACGCTATGAGCCTCCGCCCCCTCCCCGCATTCCTTTTGGTGGTCCCTTTGA
AGACTACTACGATGAGTATGTTGGTGTCCGACTACGTACCCAAACAGGAGAAGCCCACCA
GTAACTTTC
■■Homology search results ■■ -
sp_hit_id Q69566
Definition sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102)
Align length 65
Score (bit) 34.7
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953900|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_A04, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv...    35   0.40 
sp|Q3ZY29|HIS6_DEHSC Imidazole glycerol phosphate synthase subun...    32   2.6  
sp|A5FQI9|HIS6_DEHSB Imidazole glycerol phosphate synthase subun...    32   2.6  
sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1 O...    30   9.7  

>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
           herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
          Length = 413

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = -1

Query: 471 INLIIKFRAKIRP*VCSXXXXXXXXTIRIC---RACIQKRLCFNKRIAER---CADICIS 310
           + + ++    +R  VC+          R+C   R C+  R+C   R+  R   CA +C+ 
Sbjct: 65  VRVSVRVSVSVRVSVCARVCARVCVCARVCVCARVCVCARVCVCARVCARVCVCACVCVC 124

Query: 309 YCICL 295
            C+C+
Sbjct: 125 ACLCV 129


>sp|Q3ZY29|HIS6_DEHSC Imidazole glycerol phosphate synthase subunit
           hisF OS=Dehalococcoides sp. (strain CBDB1) GN=hisF PE=3
           SV=1
          Length = 253

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 219 REVATQTTVARAGQDKSWAQHSPSSAPQTIAATNSVFGRRC 97
           R +A  TT+ RAG DK     +  S P  I+     FGR+C
Sbjct: 84  RSIADMTTLLRAGADKVSVNSAAVSDPDLISRGAEKFGRQC 124


>sp|A5FQI9|HIS6_DEHSB Imidazole glycerol phosphate synthase subunit
           hisF OS=Dehalococcoides sp. (strain BAV1) GN=hisF PE=3
           SV=1
          Length = 253

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 219 REVATQTTVARAGQDKSWAQHSPSSAPQTIAATNSVFGRRC 97
           R +A  TT+ RAG DK     +  S P  I+     FGR+C
Sbjct: 84  RSIADMTTLLRAGADKVSVNSAAVSDPDLISRGAEKFGRQC 124


>sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1
            OS=Gallus gallus GN=RREB1 PE=2 SV=2
          Length = 1615

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 297  LPCEVTLRENHSTESCSRGRELNRE*REVATQTTVARAGQDKSWAQ 160
            L CE T +EN  +ES S G    R+  E ++   + +  + KS A+
Sbjct: 1368 LDCEATGKENEESESISEGEGTERKSTEKSSDDKIPKTDEAKSTAK 1413
tr_hit_id B7FTA9
Definition tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment) OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 72
Score (bit) 35.0
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953900|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_A04, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment) OS=Phaeodact...    35   3.4  

>tr|B7FTA9|B7FTA9_PHATR Predicted protein (Fragment)
           OS=Phaeodactylum tricornutum CCAP 1055/1
           GN=PHATRDRAFT_43741 PE=4 SV=1
          Length = 504

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +1

Query: 136 LRGRRRAVLRPTLILSCPRDCSLRSDFSLLSVKLTSSTARFSGVILSQGNFTGQANAVAD 315
           +R  R+++ RP  + SCP D   R+        L+S  +  S  ILS   F   +NA+AD
Sbjct: 1   MRSVRKSMARP--VSSCPTDAGTRASIDRQGCLLSSYQSTSSWQILSVRRFAAMSNALAD 58

Query: 316 ANVSATFSNPLV 351
             V    + P V
Sbjct: 59  LRVLNRRTIPFV 70