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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953906
Clone id TST39A01NGRL0019_A10
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_A10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCACGGGATCGTCGGCCCGCTTGCAGGCGATCCTGTGTTCTCTTGGTTGTAGCAAAGGG
ATCTGTAAGGCCTGCCGCTGCTTTAGGGTTTTCCCGATCCCTGCTTCTTTATTCCTGCCA
TATGTGACAACAGGGGGCTAATCAGCGCTGTCCATTTATCAGTTGGTCGGTGATCTGACA
CTGCTTTTAGTTGAATCGGCAACAGTGTGATGTCTCACGCCCTTGGCGACACCACTCCTA
ATGTGGTGACCCTGGTTCGTCATCTTGGGCCCAAAGTGCACAAGTCTTGTACTGAATGGG
TACAGCATAGCCTTTCCTTGCAACGCTATAAAGGCTGGGCCATGTCTACGGTGATCTATG
GAATTGGATCTGTCGAAGCAACCATATCAAGCCAGATTTCAATACATGATGCAGTTGCAC
CGCCGTCTGTGAGAACTGGAAGCTACAGGGTGGCCCCAAGAATGTTGGCATACAAGGCAA
GGCGCACCAAGAGGCGATCTCACAGAGGTGGGGGAGATGGGGATGATGAAGGGCCTGAGT
GGGATGAAGGAGGGTTTGGTGGCAGCGGGGGCTGGGGCGGAAACGACAA
■■Homology search results ■■ -
sp_hit_id P35074
Definition sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis briggsae
Align length 50
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_A10, 5'
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1...    32   2.3  
sp|Q6P1G2|JHD1B_MOUSE JmjC domain-containing histone demethylati...    32   2.3  
sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1...    32   3.1  
sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violace...    31   5.3  
sp|Q8XVI2|MURE_RALSO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--...    30   6.8  

>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis briggsae GN=ama-1 PE=3 SV=2
          Length = 1853

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 581  SAPAPAATKPSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSS 432
            ++P  + T PS+ P  P   P SPT   SP   P    Q+S   P  S S
Sbjct: 1782 TSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPSSPTYSPS 1831


>sp|Q6P1G2|JHD1B_MOUSE JmjC domain-containing histone demethylation
            protein 1B OS=Mus musculus GN=Fbxl10 PE=1 SV=1
          Length = 1309

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -3

Query: 587  VVSAPAPAATKPSFIPLRPFII---PISPTSVRSPL--GAPCLVCQHSWGHPVASSSHRR 423
            V+S P P+A+ P  I +   +I   PISP     PL  GA  ++ +  W    +  SHR 
Sbjct: 995  VMSRPPPSASPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHRD 1054

Query: 422  RCNCI 408
             C C+
Sbjct: 1055 LCVCM 1059


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1
            OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=2
          Length = 1852

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 581  SAPAPAATKPSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSS 432
            ++P  + T PS+ P  P   P SPT   SP   P    Q+S   P  S S
Sbjct: 1781 TSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPS 1830


>sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
           GN=cmk PE=3 SV=1
          Length = 222

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 432 SQTAVQL-HHVLKSGLIWLLRQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALWAQDDE 256
           +Q A +L  H L SG ++ L  +   R    W    ++AR   A+P+++   A+W + ++
Sbjct: 21  AQVAARLAFHYLDSGSLYRLLALHARRRGIAWDDEPALARAAAALPVEFSDGAVWLEGND 80


>sp|Q8XVI2|MURE_RALSO
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase OS=Ralstonia solanacearum
           GN=murE PE=3 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +3

Query: 237 PNVVTLVRHLGPKVHKSCTEWVQHSLSLQRYKGWAMSTVIYGIGSVEATISSQISIHDAV 416
           P+ + ++   G     SC++W+  +LS Q  +   + T+  G G V+A +++  +  DA+
Sbjct: 115 PDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGTL--GTGFVDALVATGFTTPDAI 172

Query: 417 APPSVRTGSYRVAPRMLA 470
                    +R   R +A
Sbjct: 173 QLQHSLADLHRAGARAVA 190
tr_hit_id A9SVR8
Definition tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 38.9
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_A10, 5'
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.22 
tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942...    39   0.28 
tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family OS...    37   1.1  
tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus G...    37   1.1  
tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae GN...    37   1.1  
tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic OS=Pros...    35   4.1  
tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (s...    35   4.1  
tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medic...    34   5.3  
tr|A6RJJ4|A6RJJ4_BOTFB Predicted protein OS=Botryotinia fuckelia...    34   5.3  
tr|Q31EB0|Q31EB0_THICR P-type ATPase (P-ATPase) superfamily cati...    34   7.1  

>tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84628 PE=4 SV=1
          Length = 369

 Score = 38.9 bits (89), Expect = 0.22
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 372 VEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 497
           V A +SS   + DA A P VR   Y++AP  L  KAR++++R
Sbjct: 106 VVAAVSSGAPVQDATAAPPVRRNCYQLAPSTLTLKARKSRKR 147


>tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942
           PE=4 SV=1
          Length = 426

 Score = 38.5 bits (88), Expect = 0.28
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 578 APAPAATK--PSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSSH 429
           AP P +    P  +P+RP ++P++P ++R  L  PC  C HS   P AS SH
Sbjct: 29  APCPMSNGHCPMRVPVRPQLLPVNPLAMRRHLPRPC--CPHSTSQP-ASDSH 77


>tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family
           OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
           44196) GN=MAB_0937c PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 365 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 189
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 188 KSSVRSPT 165
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus
           GN=mmpL PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 365 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 189
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 188 KSSVRSPT 165
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae
           GN=mmpL PE=4 SV=1
          Length = 1006

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -3

Query: 365 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 189
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 188 KSSVRSPT 165
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012018 PE=4 SV=1
          Length = 347

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +3

Query: 384 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRRS 500
           IS+ I   DA+APP VR+ S + A R    + RRT+RRS
Sbjct: 86  ISAMIFPVDALAPPPVRSNSCKTARRTSLRRKRRTRRRS 124


>tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic
           OS=Prosthecochloris vibrioformis (strain DSM 265)
           GN=Cvib_0782 PE=3 SV=1
          Length = 503

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 306 HSLSLQRYKGW---AMSTVIYGIGSVEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYK 476
           H L L ++      A+ T +Y   S+    SS ++  ++V P S+R     VAPR+L+YK
Sbjct: 341 HELRLPKHHATSFAAVETRLYDALSIPVPDSSAVA--ESVTPDSIRVSFVAVAPRLLSYK 398

Query: 477 ARR 485
            +R
Sbjct: 399 VKR 401


>tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (strain
            So ce56) GN=sce6844 PE=4 SV=1
          Length = 1716

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 534  ALHHPHLPHLCEIASWCALPCMPTFLGP-PCSFQFSQTAVQLHHVLKSGLIWLLRQIQFH 358
            +L H H      + S C    M + LG  PC+FQFS+ A++L+   KS    L  ++ FH
Sbjct: 921  SLQHGHAEESSFVYS-CYAAVMVSILGDVPCAFQFSEMALRLNEKFKSVTAMLKGRLLFH 979

Query: 357  RSP*TWPSLYSVARKGYAVPI 295
             +      + S+  + YA  I
Sbjct: 980  HA-----GVISIWHRHYATSI 995


>tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 179

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 384 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 497
           IS+ I   DAVAPP V+  + R+  R L  + RRT+R+
Sbjct: 34  ISAMIHPCDAVAPPPVKPSTRRIPRRTLTRRKRRTRRK 71


>tr|A6RJJ4|A6RJJ4_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_00615 PE=4 SV=1
          Length = 486

 Score = 34.3 bits (77), Expect = 5.3
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 587 VVSAPAPAATKPSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSSHRRRCNC 411
           V  AP  A+T    I + P I P++   V     A CL C  +W      S H R  NC
Sbjct: 312 VPEAPTAASTDECPICISPLIAPLNAILVHPCRHAFCLKCIQTWIRTQRQSLHARSVNC 370