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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953921
Clone id TST39A01NGRL0019_B01
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_B01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCGAGGTGATTTTGGAGGCCGGGGCCGTGGTGATTTCGGAGGGCGTGGTGGAAGAGCAG
GCCGTGGTGATTTCGGAGGGCGCGGCGGAAGGGGCAGGGGTAGCTTTGGAGATGGAGGAC
GGGGTGGTGGTAGGAGAGGAGGAAGAGGATTTGGAGGTTCGAAGGCCAATCTATCGGGAT
CAGGGAAGAAGACCACTTTTGGAGATGATTGATCTTGGTCGTCTTTATCTTCGCAGTATC
AGTGCAGCTCCACTAATTTGATCTTGCAGTGCAGCGCCACTGATGACGAGAGAGAATGTC
CTACAATTGCTGGAATGTGGATATTCTGATGTGATTGAAAGCTCATTCACCCTCCAAACT
GGGCAGGGTGTTGTATGAATAATGTCCCACGAAGAGCACATTCACCCTTGTGTGGGGTGT
TGTAGTTGTAACAGTTTTGAGGCTCAATCTTTGCAATTTTGATTCAAGGGAAAGGTTTTG
TATATTTTAACAGCTGCTACTTAAATTGGAATTTAAAAAGTTGGTTTTTCTTTTTTTAAA
AA
■■Homology search results ■■ -
sp_hit_id Q63470
Definition sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Rattus norvegicus
Align length 50
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953921|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B01, 5'
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylation-re...    32   2.0  
sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphorylation-...    32   2.0  
sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphorylation-...    32   2.0  
sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcriptio...    30   7.6  

>sp|Q63470|DYR1A_RAT Dual specificity
           tyrosine-phosphorylation-regulated kinase 1A OS=Rattus
           norvegicus GN=Dyrk1a PE=1 SV=2
          Length = 763

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 177 PIDWPSNLQILFLLSYHHPVLHLQSYPCPFRRALRNHHGLLFHHALRNHH 28
           P+ W        +    HPV     +  P + AL +HHG   HH   +HH
Sbjct: 565 PLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHH 614


>sp|Q61214|DYR1A_MOUSE Dual specificity
           tyrosine-phosphorylation-regulated kinase 1A OS=Mus
           musculus GN=Dyrk1a PE=1 SV=1
          Length = 763

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 177 PIDWPSNLQILFLLSYHHPVLHLQSYPCPFRRALRNHHGLLFHHALRNHH 28
           P+ W        +    HPV     +  P + AL +HHG   HH   +HH
Sbjct: 565 PLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHH 614


>sp|Q13627|DYR1A_HUMAN Dual specificity
           tyrosine-phosphorylation-regulated kinase 1A OS=Homo
           sapiens GN=DYRK1A PE=1 SV=2
          Length = 763

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 177 PIDWPSNLQILFLLSYHHPVLHLQSYPCPFRRALRNHHGLLFHHALRNHH 28
           P+ W        +    HPV     +  P + AL +HHG   HH   +HH
Sbjct: 565 PLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHH 614


>sp|Q60UZ5|MED23_CAEBR Mediator of RNA polymerase II transcription
            subunit 23 OS=Caenorhabditis briggsae GN=sur-2 PE=3 SV=2
          Length = 1587

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 129  HHPVLHLQSYPCPFRRALRNHHGLLFHHALRNHHGPGLQNHL 4
            H   +H Q YP           G +FHH    H G G+Q+H+
Sbjct: 1501 HQMAMHQQMYP-----------GQMFHHPQGGHMGYGMQHHM 1531
tr_hit_id B6QM07
Definition tr|B6QM07|B6QM07_PENMA Putative uncharacterized protein OS=Penicillium marneffei ATCC 18224
Align length 98
Score (bit) 37.4
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953921|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B01, 5'
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6QM07|B6QM07_PENMA Putative uncharacterized protein OS=Penic...    37   0.51 
tr|Q9W7C7|Q9W7C7_ORYLA Putative uncharacterized protein OS=Oryzi...    34   5.7  
tr|B8LDT5|B8LDT5_THAPS Predicted protein OS=Thalassiosira pseudo...    34   5.7  
tr|Q8A7W2|Q8A7W2_BACTN Iron-sulfur flavoprotein OS=Bacteroides t...    33   9.7  
tr|Q59T39|Q59T39_CANAL Putative uncharacterized protein OS=Candi...    33   9.7  

>tr|B6QM07|B6QM07_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_059140 PE=4
           SV=1
          Length = 1220

 Score = 37.4 bits (85), Expect = 0.51
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
 Frame = -3

Query: 372 NTLPSLEGE*AFNHIRISTFQQL*DILSRHQWRCTARSN*WSCTDTAKIKTTKINHLQKW 193
           N  P L    ++  I + ++Q L DI++R + +C       +      ++  KI H   W
Sbjct: 322 NADPQLTNYISYAMIELLSWQVLGDIINRFRAKCLGLDPLSTIWAPGMLQRLKIPHTYCW 381

Query: 192 SSSLI--PIDWPSNLQI-----LFLLSYHHPVLHLQSY 100
           S +LI  P DW S++ I     L L S + PV  LQ++
Sbjct: 382 SPALIPKPTDWGSHICISGFSFLNLASNYTPVADLQAF 419


>tr|Q9W7C7|Q9W7C7_ORYLA Putative uncharacterized protein OS=Oryzias
           latipes PE=2 SV=1
          Length = 216

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
 Frame = -3

Query: 174 IDWPSNLQILFLLSYHHPVLHLQSYPCPFRRAL-----------RNHHGLLFHHALRNHH 28
           + WP    +  LL + HP  H  S+     R             ++HHG +F+H    HH
Sbjct: 128 LHWPFFRVLHGLLCHQHPCPHAHSHAYDDDRCSAHQHPRHCGKHKHHHGPVFYHP---HH 184

Query: 27  GPGLQNH 7
           GPG  +H
Sbjct: 185 GPGHHHH 191


>tr|B8LDT5|B8LDT5_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_25548 PE=4 SV=1
          Length = 1774

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 126 HPVLHLQSYPCPFRRALRNHHGLLFHHALRNHHGPGLQNH 7
           HP+ H+QSYP P       H    +HH   NHH    Q+H
Sbjct: 357 HPMSHVQSYP-PMHHVHHQHISPTYHH--HNHHNQQQQHH 393


>tr|Q8A7W2|Q8A7W2_BACTN Iron-sulfur flavoprotein OS=Bacteroides
           thetaiotaomicron GN=BT_1412 PE=4 SV=1
          Length = 179

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 319 GYSDVIESSF---TLQTGQGVV*IMSHEEHIHPCVGCCSCNSF 438
           G SD++   F    L+TG  V  I   E+ IHPC GC  C+ +
Sbjct: 16  GNSDMLCDEFMKGVLETGNEVEKIFLKEKVIHPCTGCSVCSMY 58


>tr|Q59T39|Q59T39_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=CaO19.14165 PE=4 SV=1
          Length = 180

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = -3

Query: 243 TDTAKIKTTKINHLQKWSSSLIPIDWPSNLQILFLLSY-HHPVLHLQSYPCPFRRALRNH 67
           T T KI T K+N  +  + + I ++ P N  IL +    +H + HL ++P      L  +
Sbjct: 36  TITIKINTIKVNTTRMTNITRIRMENPKNQNILHMNHLTNHLMNHLMNHPTNHLIILHMN 95

Query: 66  HGLLFHHALR---NHHGPGLQNH 7
           H  L +H +    NHH   L NH
Sbjct: 96  H--LMNHLINHPTNHHMNHLINH 116