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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953935
Clone id TST39A01NGRL0019_B15
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_B15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCTGTCGCTGTCGCTCTCGCTCTCGCTCTCTCGTCCATGGCTTTCTCCTGCCTCGCTCC
GGTTGAGCTTAGCATGGCTTCAGGCTCTCTTTCTCCCAATATTTTGAATGTTGGACAACA
GCATTTAAAGTCTTTGTCAGGCTTTCAACTGAGGCCAAGAAAGTTTGCTGGAGGCTGCTT
TGATCGATCGCTTCCACTAAGGCTCCATAGGTTCCACGTATGCGCAGATTATGGGGATAG
GAGAGGCTCGGGAGCTGGTGAATTTGTCGCAGGTTTTGTCCTGGGAGGTTTAGTGTTCGG
AGCACTAGGTTACTTATTTGCACCGCAGGTTTCCTCAAAATTGTTTGGCACAAAAGATGG
AGACTTAGAAAGCTCAACGTCCCTTTCTGATGATGATGAAGGCATTGCGAAGACGAGACG
AAACCTGAATGAAAAGATTGCGAAGTTGAATGCTGCTATCGATAATGTTTCTGCTCAACT
AAGAGCAGATAATGGTTTCACCTACTCTGAAGATAATGTCACTGAACTCGAGTCTGCAGC
TTAAACAGAAAGTTTATAGAAATCTTCACAACTTCTCTATTGAGGTCTCCAAGGACAAAA
AT
■■Homology search results ■■ -
sp_hit_id Q921T2
Definition sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus musculus
Align length 48
Score (bit) 31.2
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953935|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B15, 5'
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus mus...    31   4.0  
sp|A2A6M5|CACO2_MOUSE Calcium-binding and coiled-coil domain-con...    31   4.0  
sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevi...    30   8.9  

>sp|Q921T2|TOIP1_MOUSE Torsin-1A-interacting protein 1 OS=Mus
           musculus GN=Tor1aip1 PE=1 SV=1
          Length = 520

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 408 AMPSSSSERDVELSKSPSFVPNNFEETCGANK*PSAPNTKPPRTKPAT 265
           A PS    R+V  S+ P+ V  +FE      + P    T P + +PA+
Sbjct: 47  AHPSRRGRREVRFSEEPAEVYGDFEPRAAKERSPGGRRTPPEKFRPAS 94


>sp|A2A6M5|CACO2_MOUSE Calcium-binding and coiled-coil
           domain-containing protein 2 OS=Mus musculus GN=Calcoco2
           PE=2 SV=1
          Length = 331

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 278 QNLRQIHQLPSLSYPHNLRIRGTYGALVEAIDQSSLQQTFLASVESLTKTLNAVVQHSKY 99
           + + ++ QL    Y  N  ++  Y  L E + +   +Q  L + + + KTL   V+    
Sbjct: 135 EKVEEMEQLSEELYQQNQELKDKYADLHEQLQR---KQVALEATQRVNKTLEHKVEEKAS 191

Query: 98  WEKE 87
           WEKE
Sbjct: 192 WEKE 195


>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis
           GN=paxip1 PE=1 SV=1
          Length = 1256

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 24/94 (25%), Positives = 39/94 (41%)
 Frame = -1

Query: 356 LLCQTILRKPAVQISNLVLRTLNLPGQNLRQIHQLPSLSYPHNLRIRGTYGALVEAIDQS 177
           L  QT+ ++  VQ   +  +T  L  Q L+Q HQ+ +L  PH +            I   
Sbjct: 644 LQSQTLQQQHHVQGQTVQQQTHQLQTQTLQQQHQIQTLQIPHQIPAPNQQ----HQIPPQ 699

Query: 176 SLQQTFLASVESLTKTLNAVVQHSKYWEKESLKP 75
            LQQ  L   + +   +      S   ++ SL+P
Sbjct: 700 MLQQQTLQLQQQMQPQIQQPQMQSGVQQQSSLQP 733
tr_hit_id A9TGI6
Definition tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 113
Score (bit) 51.6
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953935|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B15, 5'
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A7PKV2|A7PKV2_VITVI Chromosome chr7 scaffold_20, whole genome...    48   4e-04
tr|A9NKY1|A9NKY1_PICSI Putative uncharacterized protein OS=Picea...    45   0.003
tr|A9NMG3|A9NMG3_PICSI Putative uncharacterized protein OS=Picea...    45   0.004
tr|A9TS03|A9TS03_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A7PB65|A7PB65_VITVI Chromosome chr16 scaffold_10, whole genom...    42   0.033
tr|A9PC67|A9PC67_POPTR Putative uncharacterized protein OS=Popul...    41   0.044
tr|Q5D1B5|Q5D1B5_XENNE PrtB OS=Xenorhabdus nematophilus GN=prtB ...    41   0.057
tr|Q9C7S3|Q9C7S3_ARATH Putative uncharacterized protein F13A11.2...    40   0.097
tr|Q016K0|Q016K0_OSTTA Chromosome 06 contig 1, DNA sequence OS=O...    40   0.097
tr|A5B5A2|A5B5A2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.097
tr|Q9C5U9|Q9C5U9_ARATH Putative uncharacterized protein OS=Arabi...    40   0.13 
tr|Q8W480|Q8W480_ARATH Putative uncharacterized protein OS=Arabi...    40   0.13 
tr|Q8H0X5|Q8H0X5_ARATH Putative uncharacterized protein At5g1666...    40   0.13 
tr|A8MS48|A8MS48_ARATH Uncharacterized protein At5g16660.2 OS=Ar...    40   0.13 
tr|A9PAS3|A9PAS3_POPTR Putative uncharacterized protein OS=Popul...    38   0.37 
tr|Q5ZF85|Q5ZF85_PLAMJ Putative uncharacterized protein OS=Plant...    38   0.48 
tr|A8J906|A8J906_CHLRE Predicted protein OS=Chlamydomonas reinha...    38   0.48 
tr|A7QPE6|A7QPE6_VITVI Chromosome chr18 scaffold_137, whole geno...    38   0.48 
tr|B7FGX7|B7FGX7_MEDTR Putative uncharacterized protein OS=Medic...    37   0.82 
tr|A8P8T4|A8P8T4_BRUMA Putative uncharacterized protein OS=Brugi...    36   1.8  
tr|B0WJC8|B0WJC8_CULQU Putative uncharacterized protein OS=Culex...    35   3.1  
tr|Q8T9E1|Q8T9E1_DROME SD04681p OS=Drosophila melanogaster GN=CG...    34   7.0  
tr|B3NEA0|B3NEA0_DROER GG16193 OS=Drosophila erecta GN=GG16193 P...    34   7.0  
tr|B4W5H5|B4W5H5_9CYAN Putative uncharacterized protein OS=Micro...    33   9.1  
tr|Q9VP22|Q9VP22_DROME CG7597, isoform A OS=Drosophila melanogas...    33   9.1  
tr|B4QK54|B4QK54_DROSI GD14967 OS=Drosophila simulans GN=GD14967...    33   9.1  
tr|B4IAQ9|B4IAQ9_DROSE GM22376 OS=Drosophila sechellia GN=GM2237...    33   9.1  

>tr|A9TGI6|A9TGI6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169954 PE=4 SV=1
          Length = 163

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
 Frame = +2

Query: 218 VCADYGDRRGSXXXXXXXXXXXXXXXXXXXXXXXXPQVSSKLF-GTKXXXXXXXXXXXXX 394
           V A+Y DRRG                         PQ+S  L  GT              
Sbjct: 53  VTAEYSDRRGGGAGDFLAGFLIGGAVFGALGYIFAPQISKTLEEGTSVKEDGAATKRPAR 112

Query: 395 XXX----IAKTRRNLNEKIAKLNAAIDNVSAQLRADNGFTYSEDNVTELESAA 541
                  + KTR+NLNEKIA+LNAAID+VSAQLR ++      +N  ELESAA
Sbjct: 113 YLEDDESLEKTRQNLNEKIAQLNAAIDDVSAQLRTED--VGVPNNNVELESAA 163


>tr|A7PKV2|A7PKV2_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019327001
           PE=4 SV=1
          Length = 162

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +2

Query: 323 PQVSSKLFGT--KXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLRADNG 496
           PQ+S  L G   K                + KTR+ L EKIA+LN+AID+VSAQLRAD+ 
Sbjct: 88  PQISKALAGADRKDLMRKLPKFIYDEEKALEKTRKILTEKIAQLNSAIDDVSAQLRADDA 147

Query: 497 FTYSEDNVTELESA 538
              S  N  E+E++
Sbjct: 148 PNGSAVNPDEIEAS 161


>tr|A9NKY1|A9NKY1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 164

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +2

Query: 410 KTRRNLNEKIAKLNAAIDNVSAQLRADNGFTYSEDNVTELE 532
           KTR+ LNEKIA+LNAAID VS+QLRA++    SE  VT  E
Sbjct: 121 KTRKTLNEKIAQLNAAIDEVSSQLRAED--DASEPAVTASE 159


>tr|A9NMG3|A9NMG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 158

 Score = 44.7 bits (104), Expect = 0.004
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +2

Query: 413 TRRNLNEKIAKLNAAIDNVSAQLRADNGFTYSEDNVTELESA 538
           TR +LNEKI++LN+AID+VS QLR  +G   S+    E+ESA
Sbjct: 116 TRNSLNEKISQLNSAIDDVSVQLRVKDGARVSDLGNREVESA 157


>tr|A9TS03|A9TS03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171605 PE=4 SV=1
          Length = 162

 Score = 42.4 bits (98), Expect = 0.020
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +2

Query: 413 TRRNLNEKIAKLNAAIDNVSAQLRADNGFTYSEDNVTELES 535
           TR+NLNE+IA+L+AAID+VSAQ++ D      ++ V+E+ES
Sbjct: 123 TRKNLNERIAQLSAAIDDVSAQVKND-----VQNTVSEIES 158


>tr|A7PB65|A7PB65_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00013966001
           PE=4 SV=1
          Length = 158

 Score = 41.6 bits (96), Expect = 0.033
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
 Frame = +2

Query: 113 GQQHLKSLSGFQLRPRKFAGG---CFDRSLPLRLHRFHVCADYGDRRGSXXXXXXXXXXX 283
           G  HLK+   +  +P  F         R     + +  VCA++                 
Sbjct: 12  GGSHLKARELWSTKPNSFGKTPRLMIQRKSNRNVRKLSVCAEHNGGNKGGGGDFVAGFLL 71

Query: 284 XXXXXXXXXXXXXPQVSSKLFGTKXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAID 463
                        PQ+   L                    + KTR+ LN KI++LN+AID
Sbjct: 72  GGAVFGTLAYVFAPQIRRSLLNEDEYGFRRAKRPMYYDEGLEKTRQTLNAKISQLNSAID 131

Query: 464 NVSAQLRADN 493
           NVS++LR  N
Sbjct: 132 NVSSRLRGGN 141


>tr|A9PC67|A9PC67_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 176

 Score = 41.2 bits (95), Expect = 0.044
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
 Frame = +2

Query: 323 PQVSSKLFGT--KXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLR---A 487
           PQ+S  L GT  K                + KTR+ L EKI +LN+AID+VS+QLR   A
Sbjct: 102 PQISKALAGTDRKDLMRKLPKFIYDEEKALEKTRKILAEKIEQLNSAIDDVSSQLRSEDA 161

Query: 488 DNGFTYSEDNV 520
            NG +   D++
Sbjct: 162 PNGASVHSDDI 172


>tr|Q5D1B5|Q5D1B5_XENNE PrtB OS=Xenorhabdus nematophilus GN=prtB
           PE=3 SV=2
          Length = 591

 Score = 40.8 bits (94), Expect = 0.057
 Identities = 28/91 (30%), Positives = 45/91 (49%)
 Frame = -1

Query: 383 GTLSFLSLHLLCQTILRKPAVQISNLVLRTLNLPGQNLRQIHQLPSLSYPHNLRIRGTYG 204
           G +  +SL +L Q + + P  + SNL LR+ NL   NLR    + +L     LR R  +G
Sbjct: 163 GAIILISLAILNQWLSQAPLAEASNLSLRSANLASTNLRNAEVIEALGMLPALRHR-WFG 221

Query: 203 ALVEAIDQSSLQQTFLASVESLTKTLNAVVQ 111
                ++   +     AS+ +LTKT+   +Q
Sbjct: 222 LHERFLNFQHIASERSASITALTKTVRMALQ 252


>tr|Q9C7S3|Q9C7S3_ARATH Putative uncharacterized protein F13A11.2
           (Putative uncharacterized protein At1g42960)
           OS=Arabidopsis thaliana GN=At1g42960 PE=2 SV=1
          Length = 168

 Score = 40.0 bits (92), Expect = 0.097
 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
 Frame = +2

Query: 404 IAKTRRNLNEKIAKLNAAIDNVSAQLRAD---NGFTYSEDNV 520
           + KTR+ L EKIA+LN+AID+VS+QL+++   NG   S D +
Sbjct: 123 LEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTDEI 164


>tr|Q016K0|Q016K0_OSTTA Chromosome 06 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot06g04000 PE=4 SV=1
          Length = 128

 Score = 40.0 bits (92), Expect = 0.097
 Identities = 29/69 (42%), Positives = 37/69 (53%)
 Frame = +2

Query: 323 PQVSSKLFGTKXXXXXXXXXXXXXXXXIAKTRRNLNEKIAKLNAAIDNVSAQLRADNGFT 502
           PQ+S  L G K                +  TRRNLNEKIA LN+AIDN S++  A++G  
Sbjct: 45  PQLSKTLLGGKRALSKALDEESEDE--LESTRRNLNEKIAALNSAIDNFSSE--AESGI- 99

Query: 503 YSEDNVTEL 529
             E  VT+L
Sbjct: 100 --EKTVTKL 106