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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953936
Clone id TST39A01NGRL0019_B16
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_B16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AACTCAGCTGCGTCGAGGTCGCCATAGCTAGCTCTCGCGCAGAGACAGACAGAGACAGAG
AGAGAGATAGAGAGATAGAGATATGGAGAGGGAACAATTGCAGCATCTTCGTGGTATTCT
TGTGGAGTCGGCACGAATTCTGAAACAACATCGGAGGCTGTTCTTCTCTCTGGCATCCAC
TCTAATCCTGCCTCTTTGCTTCTTGCTCCTCGCCCATCACCTTGTTTCCGGGCCCCTCGT
CCACAAGATTCGTCACAATGAGGAATTCATTGAAGAGCATCCAGGGACCTCTGCTGCCGA
ACACCGTCAGGCTGAAATCGCTCATGAATGGGCCTCCCTCCTTGCCTTCTTCATTGCCTA
TCTCCTCTTTGTCCTCGCCTTTTCCCTTCTCTCCACCGCAGCTACCGTGTACAGCGTTGC
ATGCATCTACACAGAGAGACCCCTTTCTTATACCAAGGTTTTGGGTGTGGTACCCACTGT
TTGGAAACGGCTCCTCATCACTTTCGCATGGGGTCTTTGTCATGATCGCAGCATACCATG
GGGATTTGCTATTCCTCACTATTACACCTCACAATT
■■Homology search results ■■ -
sp_hit_id O17820
Definition sp|O17820|SRG17_CAEEL Serpentine receptor class gamma-17 OS=Caenorhabditis elegans
Align length 52
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B16, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O17820|SRG17_CAEEL Serpentine receptor class gamma-17 OS=Caen...    33   1.0  
sp|Q5RDX3|CQ068_PONAB Uncharacterized protein C17orf68 homolog O...    32   2.3  
sp|Q0U5F2|KU70_PHANO Protein Ku70 OS=Phaeosphaeria nodorum GN=KU...    32   3.0  
sp|O15020|SPTN2_HUMAN Spectrin beta chain, brain 2 OS=Homo sapie...    30   8.6  

>sp|O17820|SRG17_CAEEL Serpentine receptor class gamma-17
           OS=Caenorhabditis elegans GN=srg-17 PE=2 SV=2
          Length = 320

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 320 AHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACI-----YTERPLSYTKV 460
           A +WASL  F    +L  L F+++ T+ T Y +AC+       ER L +T +
Sbjct: 189 AVKWASLSLFQSICILTALGFTIVCTSVTFYKLACLSDRVRSIERSLCFTSI 240


>sp|Q5RDX3|CQ068_PONAB Uncharacterized protein C17orf68 homolog
           OS=Pongo abelii PE=2 SV=1
          Length = 1217

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
 Frame = +3

Query: 213 PITLFPGP----------SSTRFVTMRNSLKSIQGPLLPNTVRLKSLM 326
           P+T+ PGP          S++R + +RN L+ +Q  L  N VRL +L+
Sbjct: 190 PLTVSPGPVTPIPVLYPESASRLLRLRNKLRGVQRNLAGNLVRLSALV 237


>sp|Q0U5F2|KU70_PHANO Protein Ku70 OS=Phaeosphaeria nodorum GN=KU70
           PE=3 SV=1
          Length = 652

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 203 RSKEAGLEWMPERRTASDVVSEFVPTPQEYHED 105
           +SK+ GL W   RR A+ ++S  +P  ++ +ED
Sbjct: 407 KSKKMGLVWFIARRNAAPILSALIPAEEQTNED 439


>sp|O15020|SPTN2_HUMAN Spectrin beta chain, brain 2 OS=Homo sapiens
           GN=SPTBN2 PE=1 SV=2
          Length = 2390

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 230 GPLVHKIRHNEEFIEE-HPGTSAAEHRQAEIAHEWASLLA 346
           GPL   +   ++ + E HPG S A  R AE+  +W  L A
Sbjct: 695 GPLKLTLEQGQQLVAEGHPGASQASARAAELQAQWERLEA 734
tr_hit_id A9S7R2
Definition tr|A9S7R2|A9S7R2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 134
Score (bit) 117.0
E-value 5.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_B16, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S7R2|A9S7R2_PHYPA Predicted protein OS=Physcomitrella paten...   117   5e-25
tr|B8LL32|B8LL32_PICSI Putative uncharacterized protein OS=Picea...   116   8e-25
tr|A9SQ84|A9SQ84_PHYPA Predicted protein OS=Physcomitrella paten...   104   4e-21
tr|A9P252|A9P252_PICSI Putative uncharacterized protein OS=Picea...   103   9e-21
tr|A9TM42|A9TM42_PHYPA Predicted protein OS=Physcomitrella paten...   101   3e-20
tr|A9TK92|A9TK92_PHYPA Predicted protein OS=Physcomitrella paten...    90   1e-16
tr|Q6ZD72|Q6ZD72_ORYSJ Os08g0107100 protein OS=Oryza sativa subs...    87   7e-16
tr|A3BNW3|A3BNW3_ORYSJ Putative uncharacterized protein OS=Oryza...    85   2e-15
tr|A7NSM6|A7NSM6_VITVI Chromosome chr18 scaffold_1, whole genome...    85   3e-15
tr|Q6DBH7|Q6DBH7_ARATH At4g19950 OS=Arabidopsis thaliana GN=At4g...    82   2e-14
tr|O49422|O49422_ARATH Putative uncharacterized protein AT4g1995...    82   2e-14
tr|A7R3G0|A7R3G0_VITVI Chromosome chr4 scaffold_519, whole genom...    81   4e-14
tr|A5BKV6|A5BKV6_VITVI Putative uncharacterized protein OS=Vitis...    80   8e-14
tr|A7P2Q2|A7P2Q2_VITVI Chromosome chr1 scaffold_5, whole genome ...    79   2e-13
tr|Q9SA06|Q9SA06_ARATH F28K20.6 protein (Putative uncharacterize...    78   3e-13
tr|O48574|O48574_ARATH T19K24.3 protein (Putative uncharacterize...    77   7e-13
tr|A2Q573|A2Q573_MEDTR Putative uncharacterized protein OS=Medic...    76   1e-12
tr|B6TI24|B6TI24_MAIZE Putative uncharacterized protein OS=Zea m...    75   3e-12
tr|B6TGY9|B6TGY9_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|Q8S2H7|Q8S2H7_ORYSJ cDNA clone:001-206-C07, full insert seque...    57   7e-07
tr|A2WW10|A2WW10_ORYSI Putative uncharacterized protein OS=Oryza...    57   7e-07
tr|B6TWG7|B6TWG7_MAIZE Putative uncharacterized protein OS=Zea m...    55   4e-06
tr|A7NSM9|A7NSM9_VITVI Chromosome chr18 scaffold_1, whole genome...    55   4e-06
tr|A7NSN0|A7NSN0_VITVI Chromosome chr18 scaffold_1, whole genome...    54   6e-06
tr|Q9C794|Q9C794_ARATH Putative uncharacterized protein F10D13_1...    49   2e-04
tr|Q9LQY7|Q9LQY7_ARATH T24P13.3 OS=Arabidopsis thaliana GN=At1g2...    45   0.004
tr|A7QSN9|A7QSN9_VITVI Chromosome undetermined scaffold_161, who...    44   0.008
tr|A9RY53|A9RY53_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.0  
tr|A5BHF9|A5BHF9_VITVI Putative uncharacterized protein OS=Vitis...    35   2.3  
tr|B4N1F3|B4N1F3_DROWI GK24212 OS=Drosophila willistoni GN=GK242...    34   5.0  

>tr|A9S7R2|A9S7R2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_105931 PE=4 SV=1
          Length = 338

 Score =  117 bits (293), Expect = 5e-25
 Identities = 69/134 (51%), Positives = 80/134 (59%), Gaps = 1/134 (0%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNE-EFIEEHPGT 289
           GI  E   +L+ H RLF SLA T              VS PL++KI  NE E   E PG+
Sbjct: 15  GICKEVFNLLRSHLRLFVSLAFTLVLPLGLVIFCHTLVSDPLMNKIGRNENEKATEIPGS 74

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGV 469
            AA   Q  +  E+ +L    I Y +FVLAFSLLSTAA VYSVACIYT + LSY KV+ V
Sbjct: 75  PAAVRTQNRLDAEFFALAIITILYFVFVLAFSLLSTAAIVYSVACIYTAKGLSYAKVISV 134

Query: 470 VPTVWKRLLITFAW 511
           VP VWKRLL TF W
Sbjct: 135 VPRVWKRLLFTFLW 148


>tr|B8LL32|B8LL32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 335

 Score =  116 bits (291), Expect = 8e-25
 Identities = 60/133 (45%), Positives = 80/133 (60%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEHPGTS 292
           GIL E+ +IL+   +   ++  T              VS PL+HKI  NE+  E+  G+ 
Sbjct: 16  GILAEAIKILRSCVKQLGAITLTLILPLSFAILGHTLVSDPLIHKIERNEDTFEKQAGSP 75

Query: 293 AAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGVV 472
            A+   A I  EW   L F   YL+F+LAFSLLSTAA VY+VACIYT + ++Y KV+ VV
Sbjct: 76  DADRTMALIYSEWTRFLLFQGGYLVFLLAFSLLSTAAVVYTVACIYTGKQITYAKVMSVV 135

Query: 473 PTVWKRLLITFAW 511
           P VWKRL++TF W
Sbjct: 136 PRVWKRLMLTFLW 148


>tr|A9SQ84|A9SQ84_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214634 PE=4 SV=1
          Length = 338

 Score =  104 bits (259), Expect = 4e-21
 Identities = 61/134 (45%), Positives = 77/134 (57%), Gaps = 1/134 (0%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIE-EHPGT 289
           GI  E+  IL+ H RLFFSLA T              ++ PL  KI  +   ++ E  G+
Sbjct: 15  GICKEAYNILQLHLRLFFSLALTLVLPLGAVIFCHDLITHPLWRKIHWDSNELDMEQAGS 74

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGV 469
           +A    Q+ +  E   L    + Y++FVLAFSLLSTAA VYSVA IYT + LSY KV+ V
Sbjct: 75  AARAQTQSRLDAELFGLGVITVVYVIFVLAFSLLSTAAIVYSVASIYTGKGLSYLKVISV 134

Query: 470 VPTVWKRLLITFAW 511
           VP VWKRL  TF W
Sbjct: 135 VPKVWKRLFFTFLW 148


>tr|A9P252|A9P252_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 344

 Score =  103 bits (256), Expect = 9e-21
 Identities = 59/133 (44%), Positives = 75/133 (56%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEHPGTS 292
           GI+  + +IL+   +L  SL  T              VS  L++KI  NE F +   GT 
Sbjct: 15  GIIGSAFKILRSCAKLLGSLTLTLILPLCFAILGHQLVSEYLLYKIHWNEMFYQVENGTP 74

Query: 293 AAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGVV 472
           A E    E+  E   L  F  AYLLFVL FSLLSTAA VY+VA IYT + +SY +V+ +V
Sbjct: 75  AGERIMKELTWERTELFIFQAAYLLFVLVFSLLSTAAVVYTVASIYTGKEISYARVMSIV 134

Query: 473 PTVWKRLLITFAW 511
           P VWKRL+ TF W
Sbjct: 135 PRVWKRLMGTFLW 147


>tr|A9TM42|A9TM42_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196328 PE=4 SV=1
          Length = 339

 Score =  101 bits (252), Expect = 3e-20
 Identities = 59/134 (44%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFI-EEHPGT 289
           GI  E+  IL+ H RLF SL+ T              ++ PL  KI  + E +  E  G+
Sbjct: 16  GICKEAYNILQVHLRLFLSLSLTLVLPLGAVIFCHDLITHPLWRKIHWDSEKLGTEQMGS 75

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGV 469
           +A    Q+ +  E   L    + Y++F+LAFSLLSTAA VYSVA IYT + LSY KV+ V
Sbjct: 76  AARAQTQSSLDSELFGLGVITVIYVIFILAFSLLSTAAIVYSVASIYTGKGLSYVKVISV 135

Query: 470 VPTVWKRLLITFAW 511
           VP VWKRL  TF W
Sbjct: 136 VPKVWKRLFFTFVW 149


>tr|A9TK92|A9TK92_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146825 PE=4 SV=1
          Length = 320

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 54/133 (40%), Positives = 70/133 (52%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEHPGTS 292
           GI  E+ +IL+ + R F S+A T              VS PL+ K+            T 
Sbjct: 15  GICSEAVKILRSYTRHFLSMAGTLVLPLGVVLLSQSFVSDPLLRKL------------TQ 62

Query: 293 AAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGVV 472
              + Q  +  E+  L    + YL+FVLA SL +TAA VYSVACIYT + LSY KV+ VV
Sbjct: 63  MGRNNQ-RLDAEFVGLYLIAVLYLVFVLALSLFATAAIVYSVACIYTGKGLSYMKVIRVV 121

Query: 473 PTVWKRLLITFAW 511
           P VW RL+ TF W
Sbjct: 122 PNVWSRLIHTFLW 134


>tr|Q6ZD72|Q6ZD72_ORYSJ Os08g0107100 protein OS=Oryza sativa subsp.
           japonica GN=P0450B04.17 PE=2 SV=1
          Length = 337

 Score = 87.0 bits (214), Expect = 7e-16
 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEH-PGT 289
           GI  E+A IL+ HR LF  +A+               +S  L   I  ++  ++   PGT
Sbjct: 15  GIYREAASILRAHRPLFARIAAAFVLPLSLLFLLHIAISHALFSHIDSDDSALDSAAPGT 74

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTER--PLSYTKVL 463
            A       +A +W +LL F  AYLL +L FSLLSTAA V+SVA +Y+ +   LS+ +VL
Sbjct: 75  PAQRRLLHRLADDWLALLLFKAAYLLALLLFSLLSTAAAVFSVASVYSAKHDALSFPRVL 134

Query: 464 GVVPTVWKRLLITF 505
            VVP VW+RL  TF
Sbjct: 135 SVVPRVWRRLAATF 148


>tr|A3BNW3|A3BNW3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024735 PE=4 SV=1
          Length = 326

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEH-PGT 289
           GI  E+A IL+ HR LF  +A+               +S  L   I  ++  ++   PGT
Sbjct: 15  GIYREAASILRAHRPLFARIAAAFVLPLSLLFLLHIAISHALFSHIDSDDSALDSAAPGT 74

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTER--PLSYTKVL 463
            A       +A +W +LL F  AYLL +L FSLLSTAA V+SVA +Y+ +   LS  +VL
Sbjct: 75  PAQRRLLHRLADDWLALLLFKAAYLLALLLFSLLSTAAAVFSVASVYSAKHDALSCPRVL 134

Query: 464 GVVPTVWKRLLITF 505
            VVP VW+RL  TF
Sbjct: 135 SVVPRVWRRLAATF 148


>tr|A7NSM6|A7NSM6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014321001
           PE=4 SV=1
          Length = 334

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
 Frame = +2

Query: 113 GILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEHPGTS 292
           GI  E+ +I+   R++F  +                 VS  L+  I  NE  + E   T 
Sbjct: 15  GIYREAYKIIFSWRKIFTQITLAFILPLSFIFLAHIEVSDYLLANIIDNENNLVE---TQ 71

Query: 293 AAEHRQAEIAH----EWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKV 460
               +  +IAH    E  +L  F  AYLLF L FSLLST+A VY++ACIYT + +++TKV
Sbjct: 72  IGTLKYNKIAHLLFSELVTLCLFKAAYLLFTLIFSLLSTSAVVYTIACIYTGQKVTFTKV 131

Query: 461 LGVVPTVWKRLLITF 505
           L VVP VWKRL++TF
Sbjct: 132 LTVVPKVWKRLILTF 146


>tr|Q6DBH7|Q6DBH7_ARATH At4g19950 OS=Arabidopsis thaliana
           GN=At4g19950 PE=2 SV=1
          Length = 321

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 46/134 (34%), Positives = 71/134 (52%)
 Frame = +2

Query: 110 RGILVESARILKQHRRLFFSLASTXXXXXXXXXXXXXXVSGPLVHKIRHNEEFIEEHPGT 289
           RGIL ES  I +   + F+ +  T               + P++ +I       + +P  
Sbjct: 14  RGILRESTSIPQYSLKTFYLITLTLIFPLSFAILAHSLFTQPILAQI-------DTYPQA 66

Query: 290 SAAEHRQAEIAHEWASLLAFFIAYLLFVLAFSLLSTAATVYSVACIYTERPLSYTKVLGV 469
                 Q+++ HEW  LL F   Y++F+ AFSLLSTAA V++VA +YT +P+S++  +  
Sbjct: 67  D-----QSQLQHEWTVLLVFQFCYIIFLFAFSLLSTAAVVFTVASLYTGKPVSFSSTMSA 121

Query: 470 VPTVWKRLLITFAW 511
           +P V KRL ITF W
Sbjct: 122 IPLVLKRLFITFLW 135