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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953978
Clone id TST39A01NGRL0019_D11
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_D11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGGCGCAACAGAAGTCCTTCTCGTTCTCGTTCAAGATCTCCAGCTGCAGCTCGACGAC
GAAGTAGAAGTCGCAGTTACAGCCGATCCCCAAGGAAAGAACGCAGTGTTTCCCCTGGCA
CTGAACCAAAACGTCGTGTGGTAAGCCGCAGTAGATCTCCTACTCCCAGGAGGGAGGCCG
GACGCTCTTACTCTCACAGTCCTGCAAGCAATGGACAAAATCCTTTGCGTGGTGATGCCA
GTCGGAGTGTGAGCAGGAGCCCTCGTCGAAGTGCCACTCCAAGCCCCCGCCGGAGTGCAA
GCCCAAGTCCTCATCGCCGAAGTGCGAGCCCGAGCCCTCGTCGTAGTATCAGTCAGAGTC
CAATGCGTGATGCAGATCAAGATAATGGATCTCCAGCTAGAAATGGCCATAGTCCTAGTC
AATCTGGCCAGAGTCCTGCTCAATCGGCTGATTAAGGAGACGAGGAAGTCTGGTTATTAA
GGACATATTTGGAGGCTCTCAAAACTGTATGCTGAGTTGAACACGTGGATATGTTTTGTA
CGCTTTTATGCCCTAAGAACTAATAGCCACCCTGTTGTCATTGCAGTTTGAAGGTAATCT
GAACAATATTGCT
■■Homology search results ■■ -
sp_hit_id Q82MI6
Definition sp|Q82MI6|PEPX_STRAW Putative Xaa-Pro dipeptidyl-peptidase OS=Streptomyces avermitilis
Align length 36
Score (bit) 30.8
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953978|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_D11, 5'
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q82MI6|PEPX_STRAW Putative Xaa-Pro dipeptidyl-peptidase OS=St...    31   5.8  
sp|P28955|TEGU_EHV1B Large tegument protein OS=Equine herpesviru...    30   9.7  
sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related prot...    30   9.8  
sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related pr...    30   9.8  

>sp|Q82MI6|PEPX_STRAW Putative Xaa-Pro dipeptidyl-peptidase
           OS=Streptomyces avermitilis GN=SAV_1674 PE=3 SV=1
          Length = 676

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 336 GSGSHFGDEDLGLHSGGGLEWHFDEGSCSHSDWHHH 229
           G+G+  G   LGL +G G E   D+   S +DW  H
Sbjct: 425 GTGTQAGVGTLGLRTGSGTETFTDDPRLSETDWAAH 460


>sp|P28955|TEGU_EHV1B Large tegument protein OS=Equine herpesvirus 1
            (strain Ab4p) GN=24 PE=3 SV=1
          Length = 3421

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 296  TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRA 183
            TP G+W+ + ++APA  PT I   +  S + RT  +++
Sbjct: 3100 TPVGSWNVSPSQAPADIPTAIPQNQNTSESPRTTSLKS 3137


>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein
           4 OS=Rattus norvegicus GN=Lrp4 PE=2 SV=2
          Length = 1905

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
 Frame = -2

Query: 342 DEGSGSHFGDEDLGLHSGGGLEWHFDEGSCSHSDWHHHAKDFVHCLQDCESKSVRPPSWE 163
           D   G H  ++   L +   L++H D G C    W     +   C  D + +   P   E
Sbjct: 54  DNDCGDHSDEDGCTLPTCSPLDFHCDNGKCIRRSWVCDGDN--DCEDDSDEQDCPPRECE 111

Query: 162 *EIYCGLPHDVLVQCQGKHCVLSL-------GIGCNCDFYFVVELQLEILNENEKDFCCA 4
            + +          CQ  +C+ SL         G N D       Q ++   ++K+F C+
Sbjct: 112 EDEF---------PCQNGYCIRSLWHCDGDNDCGDNSD------EQCDMRKCSDKEFRCS 156

Query: 3   D 1
           D
Sbjct: 157 D 157


>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related
           protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=2
          Length = 1905

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
 Frame = -2

Query: 342 DEGSGSHFGDEDLGLHSGGGLEWHFDEGSCSHSDWHHHAKDFVHCLQDCESKSVRPPSWE 163
           D   G H  ++   L +   L++H D G C    W     +   C  D + +   P   E
Sbjct: 54  DNDCGDHSDEDGCTLPTCSPLDFHCDNGKCIRRSWVCDGDN--DCEDDSDEQDCPPRECE 111

Query: 162 *EIYCGLPHDVLVQCQGKHCVLSL-------GIGCNCDFYFVVELQLEILNENEKDFCCA 4
            + +          CQ  +C+ SL         G N D       Q ++   ++K+F C+
Sbjct: 112 EDEF---------PCQNGYCIRSLWHCDGDNDCGDNSD------EQCDMRKCSDKEFRCS 156

Query: 3   D 1
           D
Sbjct: 157 D 157
tr_hit_id A6C7S1
Definition tr|A6C7S1|A6C7S1_9PLAN Putative uncharacterized protein OS=Planctomyces maris DSM 8797
Align length 41
Score (bit) 35.0
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953978|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_D11, 5'
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6C7S1|A6C7S1_9PLAN Putative uncharacterized protein OS=Planc...    35   3.5  
tr|Q2IXV9|Q2IXV9_RHOP2 VCBS OS=Rhodopseudomonas palustris (strai...    35   4.5  
tr|B6MVD3|B6MVD3_BRAFL Putative uncharacterized protein OS=Branc...    35   4.5  
tr|Q63WT6|Q63WT6_BURPS Family S13 unassigned peptidase OS=Burkho...    33   10.0 
tr|Q62MD7|Q62MD7_BURMA D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|Q3JVI2|Q3JVI2_BURP1 Family S13 unassigned peptidase OS=Burkho...    33   10.0 
tr|A3NS09|A3NS09_BURP0 D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A3MH94|A3MH94_BURM7 D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A2S8X6|A2S8X6_BURM9 D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A1V146|A1V146_BURMS D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A9K5T3|A9K5T3_BURMA D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A8KKS5|A8KKS5_BURPS D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A5XX46|A5XX46_BURMA D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A5TQY4|A5TQY4_BURMA D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 
tr|A5JC66|A5JC66_BURMA D-alanyl-D-alanine carboxypeptidase/D-ala...    33   10.0 

>tr|A6C7S1|A6C7S1_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_23144 PE=4
           SV=1
          Length = 100

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 294 SGGGLEWHFDEGSCSH--SDWHHHAKDFVHCLQDCESKSVR 178
           S GGL    D  +C H   DWHH+A   +    DC S+ VR
Sbjct: 43  SVGGLGHLHDRFTCPHRDEDWHHYASQLIAQKHDCASRRVR 83


>tr|Q2IXV9|Q2IXV9_RHOP2 VCBS OS=Rhodopseudomonas palustris (strain
            HaA2) GN=RPB_2246 PE=3 SV=1
          Length = 5769

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 275  GTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTF 129
            GT+T+AP  +P         S+   T+R  ASG P     + A YH TF
Sbjct: 3963 GTATQAPGLSPNQTAVAFAESVTGSTIRTDASGQPNAIATTGATYHLTF 4011


>tr|B6MVD3|B6MVD3_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_124845 PE=4 SV=1
          Length = 2717

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 29/94 (30%), Positives = 38/94 (40%)
 Frame = -2

Query: 348  YYDEGSGSHFGDEDLGLHSGGGLEWHFDEGSCSHSDWHHHAKDFVHCLQDCESKSVRPPS 169
            YY  G+G  +    L      G E + ++  CSHS W                  + PP+
Sbjct: 1084 YYGPGTGPVW----LSNLQCNGFETNVED--CSHSGW-----------------GMNPPT 1120

Query: 168  WE*EIYCGLPHDVLVQCQGKHCVLSLGIGCNCDF 67
                  C  PHDV V CQG    +S GI  +CDF
Sbjct: 1121 ------CTHPHDVSVVCQGS---VSTGISIDCDF 1145



 Score = 34.7 bits (78), Expect = 4.5
 Identities = 29/94 (30%), Positives = 38/94 (40%)
 Frame = -2

Query: 348  YYDEGSGSHFGDEDLGLHSGGGLEWHFDEGSCSHSDWHHHAKDFVHCLQDCESKSVRPPS 169
            YY  G+G  +    L      G E + ++  CSHS W                  + PP+
Sbjct: 2500 YYGPGTGPVW----LSNLQCNGFETNVED--CSHSGW-----------------GMNPPT 2536

Query: 168  WE*EIYCGLPHDVLVQCQGKHCVLSLGIGCNCDF 67
                  C  PHDV V CQG    +S GI  +CDF
Sbjct: 2537 ------CTHPHDVSVVCQGS---VSTGISIDCDF 2561


>tr|Q63WT6|Q63WT6_BURPS Family S13 unassigned peptidase
           OS=Burkholderia pseudomallei GN=BPSL0805 PE=4 SV=1
          Length = 483

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 66  TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 125

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 126 TGDPKLVP 133


>tr|Q62MD7|Q62MD7_BURMA D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           OS=Burkholderia mallei GN=dacB PE=4 SV=1
          Length = 483

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 66  TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 125

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 126 TGDPKLVP 133


>tr|Q3JVI2|Q3JVI2_BURP1 Family S13 unassigned peptidase
           OS=Burkholderia pseudomallei (strain 1710b) GN=dacB PE=4
           SV=1
          Length = 800

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 383 TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 442

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 443 TGDPKLVP 450


>tr|A3NS09|A3NS09_BURP0 D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           OS=Burkholderia pseudomallei (strain 1106a) GN=dacB PE=4
           SV=1
          Length = 562

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 145 TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 204

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 205 TGDPKLVP 212


>tr|A3MH94|A3MH94_BURM7 D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           OS=Burkholderia mallei (strain NCTC 10247) GN=dacB PE=4
           SV=1
          Length = 513

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 96  TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 155

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 156 TGDPKLVP 163


>tr|A2S8X6|A2S8X6_BURM9 D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           OS=Burkholderia mallei (strain NCTC 10229) GN=dacB PE=4
           SV=1
          Length = 513

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 96  TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 155

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 156 TGDPKLVP 163


>tr|A1V146|A1V146_BURMS D-alanyl-D-alanine
           carboxypeptidase/D-alanyl-D-alanine-endopeptidase
           OS=Burkholderia mallei (strain SAVP1) GN=dacB PE=4 SV=1
          Length = 513

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = -3

Query: 296 TPAGAWSGTSTRAPAHTPTGITTQRILSIACRTVRVRASGLPPGSRRSTAAYHTTFWFSA 117
           TPA AW+ +    PA T   +TT   LS+     R R S    G        H T +   
Sbjct: 96  TPAVAWNASRPMQPASTMKLVTTYAGLSLLGADYRWRTSAYADGDVDENGTLHGTLYIKG 155

Query: 116 RGNTAFFP 93
            G+    P
Sbjct: 156 TGDPKLVP 163