DK954002
Clone id TST39A01NGRL0019_E13
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_E13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTGGGAAGAGGTGGCCAATAATGTCTTCTTGCGGGGTGGTGGTAGCGAGCCCAGCAAATC
TTCTGTCCAATGCCGTCACAAGATTGAAAAGCTGAGGAAAAAGTATAGGGAAGAGAAGCA
GTCAGAAGAGCAACGAGGCTCTGGGTCCTCATCATGGCCCTTTTTTGAGTACATGGATGC
CATGGAGCGTGGCAAATCTGTAAGCAAGCTAAAACTTCCTGCAACATTTGGCAGTGCTGG
TGTTATTACTTCTGGCAATGGCAATTCCGTTCGGGGTAGCCACTTTCGATCAAGATGGCA
GGACAGTGGGGATAAGGATTATGAGCCTCCCCTCTCTGTGAACAAGGAGGGTCGCGATGC
TAGTCCTCCAAGAGTGAGGGGCTCTATGCGTGCTAAAGGAGGTTCGACTCAAAATCCTGA
ACACACTTACATAGAGTCCCCACGGGTCACCCTCCGCCCAAAGATTCGTAAGAGCTATGC
CATGGATGATGATCACATCAGCATGGATGATAAATCAACCTATCATGGGTGCCTAGTGAT
TTCCTTCCCAAAAGCGAAT
■■Homology search results ■■ -
sp_hit_id Q61329
Definition sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus
Align length 91
Score (bit) 31.6
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954002|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_E13, 5'
(559 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musc... 32 2.8
sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharo... 32 2.8
sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharo... 32 2.8
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderom... 32 2.8
sp|P34109|MYOD_DICDI Myosin ID heavy chain OS=Dictyostelium disc... 31 3.6
sp|A0B7B7|SYL_METTP Leucyl-tRNA synthetase OS=Methanosaeta therm... 30 6.2
sp|Q02CZ9|KCY_SOLUE Cytidylate kinase OS=Solibacter usitatus (st... 30 8.1
sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago... 30 8.1

>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus
GN=Zfhx3 PE=1 SV=1
Length = 3726

Score = 31.6 bits (70), Expect = 2.8
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = -2

Query: 402 PPLARIEPLTLGGLASRPSLFTERGGS*SLSPLSCHLDRKWLPRTELPLPEVITPALPNV 223
P L I P+ L GL +RPSL + +L+ +L LP T +P P + T LPN
Sbjct: 3124 PALQGIPPVLLPGL-NRPSLPGFTPANTALTSPKPNL--MGLPSTTVPSPGLPTSGLPNK 3180

Query: 222 AGSFSLLTDLP--RSMASMYSKKGHDEDPEP 136
S SL + P +MA + P+P
Sbjct: 3181 PSSASLSSPTPAQATMAMAPQPPPQPQQPQP 3211


>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7
OS=Saccharomyces cerevisiae GN=DBP7 PE=1 SV=1
Length = 742

Score = 31.6 bits (70), Expect = 2.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2

Query: 155 WPFFEYMDAMERGKSVSKLKLPATFGSAGVITSGNGNSVRGSHFRSRWQDSGDKDYEPPL 334
W M GK+VS+ + T G G+I NS++ H S + + Y+
Sbjct: 33 WKDRRRMKMKLEGKTVSRKRKANTTGDEGIIPGRGENSIKKLHKESSYSSEEQEKYKGRN 92

Query: 335 SVNKEGR 355
+ N +GR
Sbjct: 93 AHNTQGR 99


>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7
OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP7 PE=3
SV=1
Length = 742

Score = 31.6 bits (70), Expect = 2.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2

Query: 155 WPFFEYMDAMERGKSVSKLKLPATFGSAGVITSGNGNSVRGSHFRSRWQDSGDKDYEPPL 334
W M GK+VS+ + T G G+I NS++ H S + + Y+
Sbjct: 33 WKDRRRMKMKLEGKTVSRKRKANTTGDEGIIPGRGENSIKKLHKESSYSSEEQEKYKGRN 92

Query: 335 SVNKEGR 355
+ N +GR
Sbjct: 93 AHNTQGR 99


>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3
OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2
Length = 535

Score = 31.6 bits (70), Expect = 2.8
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +2

Query: 299 QDSGDKDYEPPLSVNKEGRDASPPRVRGSMRAKGGSTQNPEHTYIESPRVTLRPKIRKSY 478
++ DK + S E RD S V+ S ST++ + Y++S +V P+
Sbjct: 51 KEKKDKKEKNKESKEAEARDDSGSNVQAS---SSSSTESTSYGYVQSSKVKDVPQSEVDK 107

Query: 479 AMDDDHISMDDKSTYHGCLVISF 547
+ D+ ++++D H ++SF
Sbjct: 108 FLTDNEVTVEDPQHLHYRPILSF 130


>sp|P34109|MYOD_DICDI Myosin ID heavy chain OS=Dictyostelium
discoideum GN=myoD PE=1 SV=2
Length = 1109

Score = 31.2 bits (69), Expect = 3.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2

Query: 335 SVNKEGRDASPPRVRGSMRAKGGSTQNPEHTYIESPRVTLRPK 463
S GR A+PP RG M +GGS P +PR + P+
Sbjct: 1054 STAPSGRGAAPPSSRGGMAPRGGSVAPPSSRGGIAPRGGIAPR 1096


>sp|A0B7B7|SYL_METTP Leucyl-tRNA synthetase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=leuS PE=3 SV=1
Length = 950

Score = 30.4 bits (67), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1

Query: 109 GREAVRRATRLWVLIMALF*VHGCHGAWQ 195
GR +RR +WV +MA F H C WQ
Sbjct: 752 GRNQLRRILNVWVRLMAPFTPHICEEIWQ 780


>sp|Q02CZ9|KCY_SOLUE Cytidylate kinase OS=Solibacter usitatus
(strain Ellin6076) GN=cmk PE=3 SV=1
Length = 232

Score = 30.0 bits (66), Expect = 8.1
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2

Query: 287 RSRWQDSGDKDYEPPLSVNKEGRDASPPRVRGSMRAKGGSTQNPEHTYIESPRVTL 454
R R+Q+ K+ PP+S + + +R S RA Q P+ Y++S +++
Sbjct: 155 RRRYQEIRTKEDPPPISQGQLAAEMKERDMRDSTRADAPLAQAPDAVYLDSTALSI 210


>sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago
maydis GN=CWC21 PE=3 SV=1
Length = 348

Score = 30.0 bits (66), Expect = 8.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2

Query: 272 RGSHFRSRWQDSGDKDYEPPLSVNKEGRDASPPRVRGSMRAKGGSTQNPEH 424
R S RSR + PLS ++ R SP R R R +++P H
Sbjct: 275 RSSRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAH 325


tr_hit_id A7QAD5
Definition tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whole genome shotgun sequence OS=Vitis vinifera
Align length 64
Score (bit) 66.6
E-value 9.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954002|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_E13, 5'
(559 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whol... 67 9e-10
tr|A5BBD2|A5BBD2_VITVI Putative uncharacterized protein (Chromos... 54 8e-06
tr|Q6Z7E6|Q6Z7E6_ORYSJ Os02g0565000 protein OS=Oryza sativa subs... 51 4e-05
tr|B4FTL5|B4FTL5_MAIZE Putative uncharacterized protein OS=Zea m... 51 4e-05
tr|A2Q1W1|A2Q1W1_MEDTR MADF; Homeodomain-like OS=Medicago trunca... 51 4e-05
tr|Q6YTS9|Q6YTS9_ORYSJ Os08g0484700 protein OS=Oryza sativa subs... 50 8e-05
tr|A3BU87|A3BU87_ORYSJ Putative uncharacterized protein OS=Oryza... 50 8e-05
tr|B7ZXZ4|B7ZXZ4_MAIZE Putative uncharacterized protein OS=Zea m... 50 1e-04
tr|A2X667|A2X667_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04
tr|A7Q5E3|A7Q5E3_VITVI Chromosome undetermined scaffold_53, whol... 47 0.001
tr|A7PVM7|A7PVM7_VITVI Chromosome chr9 scaffold_33, whole genome... 47 0.001
tr|A5BGR3|A5BGR3_VITVI Putative uncharacterized protein OS=Vitis... 47 0.001
tr|B4FUD9|B4FUD9_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002
tr|B6U674|B6U674_MAIZE 6b-interacting protein 1 OS=Zea mays PE=2... 44 0.005
tr|Q8GXH1|Q8GXH1_ARATH Putative uncharacterized protein At4g1706... 44 0.006
tr|Q9AY44|Q9AY44_ORYSA Putative uncharacterized protein OSJNBa00... 43 0.010
tr|Q7XC32|Q7XC32_ORYSJ Os10g0564200 protein OS=Oryza sativa subs... 43 0.010
tr|A2ZAB2|A2ZAB2_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.010
tr|A3AU81|A3AU81_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.017
tr|Q7XRK9|Q7XRK9_ORYSJ Os04g0445600 protein OS=Oryza sativa subs... 42 0.023
tr|Q01J36|Q01J36_ORYSA OSIGBa0140O07.7 protein OS=Oryza sativa G... 42 0.023
tr|O80512|O80512_ARATH Putative uncharacterized protein At2g4473... 42 0.023
tr|A9SCG0|A9SCG0_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.050
tr|Q9LRX5|Q9LRX5_ARATH Gb|AAC27475.1 (Putative uncharacterized p... 40 0.066
tr|Q9M2U8|Q9M2U8_ARATH Putative uncharacterized protein T12E18_8... 39 0.15
tr|A9NWZ6|A9NWZ6_PICSI Putative uncharacterized protein OS=Picea... 39 0.15
tr|A7UQU8|A7UQU8_MEDTR Homeodomain-like; Uridylate kinase OS=Med... 39 0.15
tr|A7Q3L3|A7Q3L3_VITVI Chromosome chr13 scaffold_48, whole genom... 39 0.15
tr|A7PJH5|A7PJH5_VITVI Chromosome chr12 scaffold_18, whole genom... 39 0.15
tr|A5BMK4|A5BMK4_VITVI Putative uncharacterized protein OS=Vitis... 39 0.15

>tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00033872001 PE=4 SV=1
Length = 282

Score = 66.6 bits (161), Expect = 9e-10
Identities = 32/64 (50%), Positives = 37/64 (57%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181
WEEVA V R EPSKS+ QCRHKIEKLRK+Y WP+F MD+
Sbjct: 54 WEEVAVTVAARCNYDEPSKSATQCRHKIEKLRKRYRAEKQRIVIGAAASSSWPYFHLMDS 113

Query: 182 MERG 193
+ERG
Sbjct: 114 LERG 117


>tr|A5BBD2|A5BBD2_VITVI Putative uncharacterized protein (Chromosome
undetermined scaffold_279, whole genome shotgun
sequence) OS=Vitis vinifera GN=GSVIVT00010721001 PE=4
SV=1
Length = 393

Score = 53.5 bits (127), Expect = 8e-06
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKY-XXXXXXXXXXXXXXXXWPFFEYMD 178
W+ V+ V LR + PSK+SVQCRHKIEKLR++Y W FF MD
Sbjct: 42 WDAVSAAVSLRCHLAAPSKTSVQCRHKIEKLRQRYRAEKQRCVAYPGGFCSSWVFFANMD 101

Query: 179 AMERGKSVSK 208
+ME G + S+
Sbjct: 102 SMEHGSNQSQ 111


>tr|Q6Z7E6|Q6Z7E6_ORYSJ Os02g0565000 protein OS=Oryza sativa subsp.
japonica GN=P0020C11.22 PE=4 SV=1
Length = 419

Score = 51.2 bits (121), Expect = 4e-05
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 10/149 (6%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181
W+EVA V R G S+ KS VQC+++I+ L+KKY WP+F +D
Sbjct: 93 WQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKKY------KVEKAKPDSSWPYFHRLDT 146

Query: 182 M--ERGKSVSKLKLPATFGSAGVITSGNGNSVRGSHFRS--------RWQDSGDKDYEPP 331
+ K A G+AG SG+ ++ + RS + + P
Sbjct: 147 LLAPVHKPAGAYPAAAAAGAAGAGNSGSNSAAAATAARSTAPMAPRVNFPQRTRTQFLPS 206

Query: 332 LSVNKEGRDASPPRVRGSMRAKGGSTQNP 418
V + R SPP+V S + G P
Sbjct: 207 SGVKR--RMPSPPQVSASSESSDGFPPEP 233


>tr|B4FTL5|B4FTL5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 319

Score = 51.2 bits (121), Expect = 4e-05
Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2

Query: 2 WEEVANNVFLR----GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFE 169
WEEVA V R G K+ QCRHK+EKLRK+Y WP+F
Sbjct: 49 WEEVAAEVAARCAATPGVVAQRKTGTQCRHKLEKLRKRY-----RTEGARPVTSLWPYFR 103

Query: 170 YMDAMERGK-SVSKLKLPATFGS 235
MD +ERG +V+ PA GS
Sbjct: 104 RMDRLERGPLAVASSAYPAATGS 126


>tr|A2Q1W1|A2Q1W1_MEDTR MADF; Homeodomain-like OS=Medicago
truncatula GN=MtrDRAFT_AC149129g20v2 PE=4 SV=1
Length = 388

Score = 51.2 bits (121), Expect = 4e-05
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEP-SKSSVQCRHKIEKLRKKY----XXXXXXXXXXXXXXXXWPFF 166
W+EVA+ V +R S P +K++VQCRHK+EKLRK+Y W F
Sbjct: 75 WQEVADAVAVRCPNSSPVAKTAVQCRHKMEKLRKRYRSEIQKLRSLPVPRSRSSSSWVLF 134

Query: 167 EYMDAMERGKS 199
+ MD+ME+G S
Sbjct: 135 KAMDSMEKGPS 145


>tr|Q6YTS9|Q6YTS9_ORYSJ Os08g0484700 protein OS=Oryza sativa subsp.
japonica GN=P0419H09.21 PE=4 SV=1
Length = 315

Score = 50.1 bits (118), Expect = 8e-05
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2

Query: 2 WEEVANNVFLR--GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYM 175
WEEVA +V R G+ K+ QCRHK+EKLRK+Y WP+F M
Sbjct: 58 WEEVAADVAARCAASGAALRKTGTQCRHKLEKLRKRY-----RIEGARPVTSLWPYFRRM 112

Query: 176 DAMERG 193
+ +ERG
Sbjct: 113 ERLERG 118


>tr|A3BU87|A3BU87_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_026609 PE=4 SV=1
Length = 315

Score = 50.1 bits (118), Expect = 8e-05
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2

Query: 2 WEEVANNVFLR--GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYM 175
WEEVA +V R G+ K+ QCRHK+EKLRK+Y WP+F M
Sbjct: 58 WEEVAADVAARCAASGAALRKTGTQCRHKLEKLRKRY-----RIEGARPVTSLWPYFRRM 112

Query: 176 DAMERG 193
+ +ERG
Sbjct: 113 ERLERG 118


>tr|B7ZXZ4|B7ZXZ4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 319

Score = 49.7 bits (117), Expect = 1e-04
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2

Query: 2 WEEVANNVFLR----GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFE 169
WE+VA V R G K+ QCRHK+EKLRK+Y WP+F
Sbjct: 49 WEKVAAEVAARCAATPGVVAQRKTGTQCRHKLEKLRKRY-----RTEGARPVTSLWPYFR 103

Query: 170 YMDAMERGK-SVSKLKLPATFGS 235
MD +ERG +V+ PA GS
Sbjct: 104 RMDRLERGPLAVASSAYPAATGS 126


>tr|A2X667|A2X667_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_07702 PE=4 SV=1
Length = 418

Score = 49.7 bits (117), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181
W+EVA V R G S+ KS VQC+++I+ L+KKY WP+F +D
Sbjct: 93 WQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKKY------KVEKAKPDSSWPYFHRLDT 146

Query: 182 MERGKSVSKLKLP-ATFGSAGVITSGNGNSVRGSHFRS--------RWQDSGDKDYEPPL 334
+ P A G+AG SG+ ++ + RS + + P
Sbjct: 147 LLAPVHKPAGAYPAAAAGAAGAGNSGSNSAAAATAARSTAPMAPRVNFPQRTRTQFLPSS 206

Query: 335 SVNKEGRDASPPRVRGSMRAKGGSTQNP 418
V + R SPP+V S + G P
Sbjct: 207 GVKR--RMPSPPQVSASSESSDGFPPEP 232


>tr|A7Q5E3|A7Q5E3_VITVI Chromosome undetermined scaffold_53, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00030905001 PE=4 SV=1
Length = 334

Score = 46.6 bits (109), Expect = 0.001
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +2

Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181
WEEVA +V R ++ K+ QC++KIE ++K+Y WP F+ +D
Sbjct: 94 WEEVARHVSSRANCTKSPKTQTQCKNKIESMKKRY-----RSESATPDASSWPLFQRLDL 148

Query: 182 MERGKSVSKLKLPAT 226
+ RG + P T
Sbjct: 149 LLRGSGAPPIPPPVT 163