DK954002 |
Clone id |
TST39A01NGRL0019_E13 |
Library |
TST39 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_E13. 5' end sequence. |
Accession |
DK954002 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL850Contig1 |
Sequence |
CTGGGAAGAGGTGGCCAATAATGTCTTCTTGCGGGGTGGTGGTAGCGAGCCCAGCAAATC TTCTGTCCAATGCCGTCACAAGATTGAAAAGCTGAGGAAAAAGTATAGGGAAGAGAAGCA GTCAGAAGAGCAACGAGGCTCTGGGTCCTCATCATGGCCCTTTTTTGAGTACATGGATGC CATGGAGCGTGGCAAATCTGTAAGCAAGCTAAAACTTCCTGCAACATTTGGCAGTGCTGG TGTTATTACTTCTGGCAATGGCAATTCCGTTCGGGGTAGCCACTTTCGATCAAGATGGCA GGACAGTGGGGATAAGGATTATGAGCCTCCCCTCTCTGTGAACAAGGAGGGTCGCGATGC TAGTCCTCCAAGAGTGAGGGGCTCTATGCGTGCTAAAGGAGGTTCGACTCAAAATCCTGA ACACACTTACATAGAGTCCCCACGGGTCACCCTCCGCCCAAAGATTCGTAAGAGCTATGC CATGGATGATGATCACATCAGCATGGATGATAAATCAACCTATCATGGGTGCCTAGTGAT TTCCTTCCCAAAAGCGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q61329 |
Definition |
sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus |
Align length |
91 |
Score (bit) |
31.6 |
E-value |
2.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QAD5 |
Definition |
tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
64 |
Score (bit) |
66.6 |
E-value |
9.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954002|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_E13, 5' (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whol... 67 9e-10 tr|A5BBD2|A5BBD2_VITVI Putative uncharacterized protein (Chromos... 54 8e-06 tr|Q6Z7E6|Q6Z7E6_ORYSJ Os02g0565000 protein OS=Oryza sativa subs... 51 4e-05 tr|B4FTL5|B4FTL5_MAIZE Putative uncharacterized protein OS=Zea m... 51 4e-05 tr|A2Q1W1|A2Q1W1_MEDTR MADF; Homeodomain-like OS=Medicago trunca... 51 4e-05 tr|Q6YTS9|Q6YTS9_ORYSJ Os08g0484700 protein OS=Oryza sativa subs... 50 8e-05 tr|A3BU87|A3BU87_ORYSJ Putative uncharacterized protein OS=Oryza... 50 8e-05 tr|B7ZXZ4|B7ZXZ4_MAIZE Putative uncharacterized protein OS=Zea m... 50 1e-04 tr|A2X667|A2X667_ORYSI Putative uncharacterized protein OS=Oryza... 50 1e-04 tr|A7Q5E3|A7Q5E3_VITVI Chromosome undetermined scaffold_53, whol... 47 0.001 tr|A7PVM7|A7PVM7_VITVI Chromosome chr9 scaffold_33, whole genome... 47 0.001 tr|A5BGR3|A5BGR3_VITVI Putative uncharacterized protein OS=Vitis... 47 0.001 tr|B4FUD9|B4FUD9_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002 tr|B6U674|B6U674_MAIZE 6b-interacting protein 1 OS=Zea mays PE=2... 44 0.005 tr|Q8GXH1|Q8GXH1_ARATH Putative uncharacterized protein At4g1706... 44 0.006 tr|Q9AY44|Q9AY44_ORYSA Putative uncharacterized protein OSJNBa00... 43 0.010 tr|Q7XC32|Q7XC32_ORYSJ Os10g0564200 protein OS=Oryza sativa subs... 43 0.010 tr|A2ZAB2|A2ZAB2_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.010 tr|A3AU81|A3AU81_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.017 tr|Q7XRK9|Q7XRK9_ORYSJ Os04g0445600 protein OS=Oryza sativa subs... 42 0.023 tr|Q01J36|Q01J36_ORYSA OSIGBa0140O07.7 protein OS=Oryza sativa G... 42 0.023 tr|O80512|O80512_ARATH Putative uncharacterized protein At2g4473... 42 0.023 tr|A9SCG0|A9SCG0_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.050 tr|Q9LRX5|Q9LRX5_ARATH Gb|AAC27475.1 (Putative uncharacterized p... 40 0.066 tr|Q9M2U8|Q9M2U8_ARATH Putative uncharacterized protein T12E18_8... 39 0.15 tr|A9NWZ6|A9NWZ6_PICSI Putative uncharacterized protein OS=Picea... 39 0.15 tr|A7UQU8|A7UQU8_MEDTR Homeodomain-like; Uridylate kinase OS=Med... 39 0.15 tr|A7Q3L3|A7Q3L3_VITVI Chromosome chr13 scaffold_48, whole genom... 39 0.15 tr|A7PJH5|A7PJH5_VITVI Chromosome chr12 scaffold_18, whole genom... 39 0.15 tr|A5BMK4|A5BMK4_VITVI Putative uncharacterized protein OS=Vitis... 39 0.15
>tr|A7QAD5|A7QAD5_VITVI Chromosome undetermined scaffold_70, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033872001 PE=4 SV=1 Length = 282
Score = 66.6 bits (161), Expect = 9e-10 Identities = 32/64 (50%), Positives = 37/64 (57%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181 WEEVA V R EPSKS+ QCRHKIEKLRK+Y WP+F MD+ Sbjct: 54 WEEVAVTVAARCNYDEPSKSATQCRHKIEKLRKRYRAEKQRIVIGAAASSSWPYFHLMDS 113
Query: 182 MERG 193 +ERG Sbjct: 114 LERG 117
>tr|A5BBD2|A5BBD2_VITVI Putative uncharacterized protein (Chromosome undetermined scaffold_279, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00010721001 PE=4 SV=1 Length = 393
Score = 53.5 bits (127), Expect = 8e-06 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKY-XXXXXXXXXXXXXXXXWPFFEYMD 178 W+ V+ V LR + PSK+SVQCRHKIEKLR++Y W FF MD Sbjct: 42 WDAVSAAVSLRCHLAAPSKTSVQCRHKIEKLRQRYRAEKQRCVAYPGGFCSSWVFFANMD 101
Query: 179 AMERGKSVSK 208 +ME G + S+ Sbjct: 102 SMEHGSNQSQ 111
>tr|Q6Z7E6|Q6Z7E6_ORYSJ Os02g0565000 protein OS=Oryza sativa subsp. japonica GN=P0020C11.22 PE=4 SV=1 Length = 419
Score = 51.2 bits (121), Expect = 4e-05 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181 W+EVA V R G S+ KS VQC+++I+ L+KKY WP+F +D Sbjct: 93 WQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKKY------KVEKAKPDSSWPYFHRLDT 146
Query: 182 M--ERGKSVSKLKLPATFGSAGVITSGNGNSVRGSHFRS--------RWQDSGDKDYEPP 331 + K A G+AG SG+ ++ + RS + + P Sbjct: 147 LLAPVHKPAGAYPAAAAAGAAGAGNSGSNSAAAATAARSTAPMAPRVNFPQRTRTQFLPS 206
Query: 332 LSVNKEGRDASPPRVRGSMRAKGGSTQNP 418 V + R SPP+V S + G P Sbjct: 207 SGVKR--RMPSPPQVSASSESSDGFPPEP 233
>tr|B4FTL5|B4FTL5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 319
Score = 51.2 bits (121), Expect = 4e-05 Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Frame = +2
Query: 2 WEEVANNVFLR----GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFE 169 WEEVA V R G K+ QCRHK+EKLRK+Y WP+F Sbjct: 49 WEEVAAEVAARCAATPGVVAQRKTGTQCRHKLEKLRKRY-----RTEGARPVTSLWPYFR 103
Query: 170 YMDAMERGK-SVSKLKLPATFGS 235 MD +ERG +V+ PA GS Sbjct: 104 RMDRLERGPLAVASSAYPAATGS 126
>tr|A2Q1W1|A2Q1W1_MEDTR MADF; Homeodomain-like OS=Medicago truncatula GN=MtrDRAFT_AC149129g20v2 PE=4 SV=1 Length = 388
Score = 51.2 bits (121), Expect = 4e-05 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEP-SKSSVQCRHKIEKLRKKY----XXXXXXXXXXXXXXXXWPFF 166 W+EVA+ V +R S P +K++VQCRHK+EKLRK+Y W F Sbjct: 75 WQEVADAVAVRCPNSSPVAKTAVQCRHKMEKLRKRYRSEIQKLRSLPVPRSRSSSSWVLF 134
Query: 167 EYMDAMERGKS 199 + MD+ME+G S Sbjct: 135 KAMDSMEKGPS 145
>tr|Q6YTS9|Q6YTS9_ORYSJ Os08g0484700 protein OS=Oryza sativa subsp. japonica GN=P0419H09.21 PE=4 SV=1 Length = 315
Score = 50.1 bits (118), Expect = 8e-05 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = +2
Query: 2 WEEVANNVFLR--GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYM 175 WEEVA +V R G+ K+ QCRHK+EKLRK+Y WP+F M Sbjct: 58 WEEVAADVAARCAASGAALRKTGTQCRHKLEKLRKRY-----RIEGARPVTSLWPYFRRM 112
Query: 176 DAMERG 193 + +ERG Sbjct: 113 ERLERG 118
>tr|A3BU87|A3BU87_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_026609 PE=4 SV=1 Length = 315
Score = 50.1 bits (118), Expect = 8e-05 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = +2
Query: 2 WEEVANNVFLR--GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYM 175 WEEVA +V R G+ K+ QCRHK+EKLRK+Y WP+F M Sbjct: 58 WEEVAADVAARCAASGAALRKTGTQCRHKLEKLRKRY-----RIEGARPVTSLWPYFRRM 112
Query: 176 DAMERG 193 + +ERG Sbjct: 113 ERLERG 118
>tr|B7ZXZ4|B7ZXZ4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 319
Score = 49.7 bits (117), Expect = 1e-04 Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Frame = +2
Query: 2 WEEVANNVFLR----GGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFE 169 WE+VA V R G K+ QCRHK+EKLRK+Y WP+F Sbjct: 49 WEKVAAEVAARCAATPGVVAQRKTGTQCRHKLEKLRKRY-----RTEGARPVTSLWPYFR 103
Query: 170 YMDAMERGK-SVSKLKLPATFGS 235 MD +ERG +V+ PA GS Sbjct: 104 RMDRLERGPLAVASSAYPAATGS 126
>tr|A2X667|A2X667_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07702 PE=4 SV=1 Length = 418
Score = 49.7 bits (117), Expect = 1e-04 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 9/148 (6%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181 W+EVA V R G S+ KS VQC+++I+ L+KKY WP+F +D Sbjct: 93 WQEVAEVVSSRDGYSKQPKSDVQCKNRIDTLKKKY------KVEKAKPDSSWPYFHRLDT 146
Query: 182 MERGKSVSKLKLP-ATFGSAGVITSGNGNSVRGSHFRS--------RWQDSGDKDYEPPL 334 + P A G+AG SG+ ++ + RS + + P Sbjct: 147 LLAPVHKPAGAYPAAAAGAAGAGNSGSNSAAAATAARSTAPMAPRVNFPQRTRTQFLPSS 206
Query: 335 SVNKEGRDASPPRVRGSMRAKGGSTQNP 418 V + R SPP+V S + G P Sbjct: 207 GVKR--RMPSPPQVSASSESSDGFPPEP 232
>tr|A7Q5E3|A7Q5E3_VITVI Chromosome undetermined scaffold_53, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030905001 PE=4 SV=1 Length = 334
Score = 46.6 bits (109), Expect = 0.001 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = +2
Query: 2 WEEVANNVFLRGGGSEPSKSSVQCRHKIEKLRKKYXXXXXXXXXXXXXXXXWPFFEYMDA 181 WEEVA +V R ++ K+ QC++KIE ++K+Y WP F+ +D Sbjct: 94 WEEVARHVSSRANCTKSPKTQTQCKNKIESMKKRY-----RSESATPDASSWPLFQRLDL 148
Query: 182 MERGKSVSKLKLPAT 226 + RG + P T Sbjct: 149 LLRGSGAPPIPPPVT 163
|