DK954018 |
Clone id |
TST39A01NGRL0019_F06 |
Library |
TST39 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_F06. 5' end sequence. |
Accession |
DK954018 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1313Contig1 |
Sequence |
GGGTTTTGCGGAAATTTCGTGTTCGGCTGTTCTGGACAGGGACTTCCTCATTAGCGGCCT TCTGTAGCTCGCTATGCCGAAGTCCAAGCGCAACAAGCTAGTGACATTGTCTAAAACCAA AAAGAAAGGGAGGGAGAGCAAGGAATCATTAGTGAAGACTGTCAGGGAATGTCTTGAAGA GTACTCGTCATTGTACATCTTCGCATTTGAGAATATGCGGAATACAAAGTTCAAAGAGTT CCGTGACAGCCTTAAAAGTAGCAGCAGATTTTTTCTCGGCTCCAACAAAGTCTTGCAATT AGCTCTTGGAAGGACAACAGCAGAGGAAGTTAAGGATGACCTCCATAAAGCCAGTGAGAT GCTACATGGAGAGTGTGGTCTTTTTTTGACAAATTTGCCTAAAGAAGAGGTTGAAAGAAT CTTTGAGGAGTTTGAAGAGCATGATTTTGGGAAGACTGGAAGTCTTGCTACAAAGACGGG TGAATTGACAGAGGGGCCTTTGGAACAGTTTAGTCATGACATGGAACCTTTTTTTGAGGA AG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9D0I8 |
Definition |
sp|Q9D0I8|MRT4_MOUSE mRNA turnover protein 4 homolog OS=Mus musculus |
Align length |
152 |
Score (bit) |
142.0 |
E-value |
1.0e-33 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P0E2 |
Definition |
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
156 |
Score (bit) |
226.0 |
E-value |
6.0e-58 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954018|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_F06, 5' (542 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea... 226 6e-58 tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella paten... 221 2e-56 tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella paten... 221 2e-56 tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solan... 199 8e-50 tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Popul... 198 2e-49 tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genom... 196 7e-49 tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncat... 188 1e-46 tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medic... 188 2e-46 tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g2526... 180 4e-44 tr|B8BNS8|B8BNS8_ORYSI Putative uncharacterized protein OS=Oryza... 174 3e-42 tr|Q2RBN3|Q2RBN3_ORYSJ Os11g0105400 protein OS=Oryza sativa subs... 173 5e-42 tr|A2ZH94|A2ZH94_ORYSI Putative uncharacterized protein OS=Oryza... 173 5e-42 tr|Q9FRH5|Q9FRH5_ARATH Putative uncharacterized protein F4F7.35 ... 172 8e-42 tr|B4FT06|B4FT06_MAIZE Putative uncharacterized protein OS=Zea m... 168 1e-40 tr|B6T5L3|B6T5L3_MAIZE mRNA turnover protein 4 OS=Zea mays PE=2 ... 166 1e-39 tr|Q2QYV8|Q2QYV8_ORYSJ Os12g0105200 protein OS=Oryza sativa subs... 160 4e-38 tr|A7T1P1|A7T1P1_NEMVE Predicted protein OS=Nematostella vectens... 145 1e-33 tr|B6PP82|B6PP82_BRAFL Putative uncharacterized protein OS=Branc... 143 5e-33 tr|Q4KTI9|Q4KTI9_SUBDO PO-like OS=Suberites domuncula PE=2 SV=1 143 7e-33 tr|A2AMV1|A2AMV1_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 142 1e-32 tr|A2AMU9|A2AMU9_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 142 1e-32 tr|B5X718|B5X718_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 141 3e-32 tr|B5DF25|B5DF25_RAT Mrto4 protein (Fragment) OS=Rattus norvegic... 140 6e-32 tr|B3KNB3|B3KNB3_HUMAN cDNA FLJ14165 fis, clone NT2RP1000746, hi... 140 6e-32 tr|Q6DEP1|Q6DEP1_XENTR MGC89995 protein (Novel protein) OS=Xenop... 138 2e-31 tr|B5XC66|B5XC66_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 138 2e-31 tr|Q4RX35|Q4RX35_TETNG Chromosome 11 SCAF14979, whole genome sho... 137 3e-31 tr|A8XH03|A8XH03_CAEBR Putative uncharacterized protein OS=Caeno... 137 3e-31 tr|Q568C9|Q568C9_DANRE Zgc:110388 OS=Danio rerio GN=zgc:110388 P... 137 4e-31 tr|B4MQ55|B4MQ55_DROWI GK21826 OS=Drosophila willistoni GN=GK218... 136 8e-31
>tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 229
Score = 226 bits (576), Expect = 6e-58 Identities = 110/156 (70%), Positives = 126/156 (80%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK+VTLSKTKKKGRE KES+V VR+ LE+Y S+Y+F+FENMRN KFK RD L Sbjct: 1 MPKSKRNKMVTLSKTKKKGREHKESIVNQVRQALEDYISVYVFSFENMRNVKFKGLRDRL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K SSRFFLGSNKVLQ++LGRT A+EVKD +HKASEMLHG+CGLF TNLPK Sbjct: 61 KGSSRFFLGSNKVLQISLGRTAADEVKDGIHKASEMLHGDCGLFFTNLPKEEVMRVFETF 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 HDF +TGSLAT+T EL EGPLEQF+HDMEPF + Sbjct: 121 EEHDFARTGSLATETIELKEGPLEQFTHDMEPFLRK 156
>tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_227616 PE=4 SV=1 Length = 232
Score = 221 bits (563), Expect = 2e-56 Identities = 107/156 (68%), Positives = 128/156 (82%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNKLVTLSKTKKKG+E KESLVK+VR+CL+EY+SLYIF+F NMRNTKFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKGKEQKESLVKSVRDCLDEYASLYIFSFVNMRNTKFKEFKEKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K+SSRFFLG NKVLQ+ALG+T AEE K+ LH+ASE +HG CGLF TNLPK Sbjct: 61 KASSRFFLGGNKVLQIALGKTAAEEHKEGLHQASEQIHGFCGLFFTNLPKFEVLREFREF 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 DF +TGS+AT+T +L EGPL+QF+HDMEPF + Sbjct: 121 EELDFARTGSIATETVDLKEGPLDQFTHDMEPFLRK 156
>tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_217191 PE=4 SV=1 Length = 232
Score = 221 bits (563), Expect = 2e-56 Identities = 108/156 (69%), Positives = 128/156 (82%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNKLVTLSKTKKK +E KESLVK+VR+CL++Y+SLYIF+FENMRN KFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKDKEQKESLVKSVRDCLDQYTSLYIFSFENMRNIKFKEFKEKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KSSSRFFLG NKVLQ+ALG++ AEE K+ LH+ASE++HG CGLF TNLPK Sbjct: 61 KSSSRFFLGGNKVLQIALGKSEAEEQKEGLHQASELIHGFCGLFFTNLPKSEVIRGFQEF 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 DF +TGS+AT+T EL EGPLEQFSHDMEPF + Sbjct: 121 EELDFARTGSVATETVELQEGPLEQFSHDMEPFLRK 156
>tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 229
Score = 199 bits (506), Expect = 8e-50 Identities = 94/156 (60%), Positives = 121/156 (77%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRN+ VTLSKTKKKG+E KE++V ++REC E+YSS Y+F+FENMRN KFKEFRD L Sbjct: 1 MPKSKRNRAVTLSKTKKKGKEHKENIVNSIRECAEKYSSAYVFSFENMRNLKFKEFRDQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KSSSRFFLGSNKV+Q+ALGR+ ++E++ LHK S+++ G+ GL TNL K Sbjct: 61 KSSSRFFLGSNKVMQVALGRSDSDEIRPGLHKISKLVRGDSGLCFTNLSKEEVQRLFNEY 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 HDF +TG+ AT+ EL EGPL+QF+H+MEPF + Sbjct: 121 EEHDFARTGTTATEKVELQEGPLDQFTHEMEPFLRK 156
>tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 229
Score = 198 bits (503), Expect = 2e-49 Identities = 93/156 (59%), Positives = 124/156 (79%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRN+ VTLSKTKKKGRE KES+V ++R+ +E+Y+S+Y+F+FENMRN KFKEFR+ Sbjct: 1 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQH 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K +SRFFLGSNKV+Q++LGR+ A+E++ LHK S++L G+ GLFLTNLP+ Sbjct: 61 KLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGDAGLFLTNLPREEVERLFNEY 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 +DF +TG+ AT+T EL EGPLEQF+H+MEPF + Sbjct: 121 EEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRK 156
>tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026600001 PE=3 SV=1 Length = 229
Score = 196 bits (498), Expect = 7e-49 Identities = 92/156 (58%), Positives = 121/156 (77%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKR++ VTLSKTKKKGR KES+V ++R+ +E YSS+Y+F+FENMRN KFKEFR+ L Sbjct: 1 MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KS+SRFFLGSNKV+Q+A+GR+ A+E++ L K S++LHG+ GLF TNLPK Sbjct: 61 KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 +DF +TGS A + EL EGPL+QF+H+MEPF + Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRK 156
>tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncatula GN=MtrDRAFT_AC157375g4v1 PE=3 SV=1 Length = 228
Score = 188 bits (478), Expect = 1e-46 Identities = 88/156 (56%), Positives = 119/156 (76%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 +DF +TGS+AT+ EL EGPLEQF+HDMEPF + Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRK 156
>tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 228
Score = 188 bits (477), Expect = 2e-46 Identities = 88/153 (57%), Positives = 118/153 (77%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPF 532 +DF +TGS+AT+ EL EGPLEQF+HDMEPF Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPF 153
>tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g25260 (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g25260 PE=2 SV=1 Length = 235
Score = 180 bits (457), Expect = 4e-44 Identities = 84/156 (53%), Positives = 116/156 (74%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKR++ VTLSKTKKKGRE KE +V +RE +E+YSS+Y+F+FENMRN KFKEFR Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 + + +FFLGSNKV+Q+ALGR+ +E++ ++K S++L G+ GL +T++PK Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 434 XXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 DF +TGS+A +T EL EGPLEQF+H+MEP + Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRK 156
>tr|B8BNS8|B8BNS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37142 PE=4 SV=1 Length = 247
Score = 174 bits (441), Expect = 3e-42 Identities = 85/157 (54%), Positives = 111/157 (70%), Gaps = 1/157 (0%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKK-GRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDS 250 MPKSKRN+ VTLSKTKKK G E K +V +++ +E Y++ Y+F ++NMRN K K+ R+ Sbjct: 1 MPKSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQ 60
Query: 251 LKSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXX 430 LKSSSR FL KV+Q+ALGR+ A+E K LHK S+ L G+ GLF TNLP+ Sbjct: 61 LKSSSRIFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFRE 120
Query: 431 XXXHDFGKTGSLATKTGELTEGPLEQFSHDMEPFFEE 541 HDF +TGS+AT+T EL EGPLEQF+H+MEPF + Sbjct: 121 FEEHDFARTGSIATETVELKEGPLEQFTHEMEPFLRK 157
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