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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954057
Clone id TST39A01NGRL0019_G21
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_G21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAACTGTGGGTGCG
GCGCAAACTGTCAATGCTCCAGCGGCTGCGAGGGGTGCGGCCGAACTGACAGCCTTGTGC
TGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCTATGAAA
GGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTTCTTGTT
TCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACACCAAAAA
TAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCGCTTGTA
CATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAATGGCTTAAGC
CAAGCCATAAAATGCAACACCTTTAGCTTCAAAAAATGGTAAGAGACATGGTTCAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 61
Score (bit) 35.0
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_G21, 5'
         (476 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    35   0.17 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    34   0.38 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    32   1.5  
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    32   1.5  
sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia c...    30   4.2  
sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog OS=Esche...    30   4.2  
sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain AT...    30   4.2  
sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-bindin...    30   7.2  
sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-bindin...    30   7.2  
sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA P...    30   7.2  
sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Aspergillus fumigatus (strain C...    30   7.2  
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   9.4  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 256 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLE 77
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAR 200

Query: 76  H 74
           H
Sbjct: 201 H 201


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 256 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLE 77
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 76  H 74
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 256 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLE 77
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPA- 199

Query: 76  H*QFAPHPQLPLQHD 32
               A HP L +  D
Sbjct: 200 ----ARHPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -2

Query: 256 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLE 77
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPA- 199

Query: 76  H*QFAPHPQLPLQHD 32
               A HP L +  D
Sbjct: 200 ----ARHPNLDMFDD 210


>sp|P77173|ZIPA_ECOLI Cell division protein zipA OS=Escherichia coli
           (strain K12) GN=zipA PE=1 SV=3
          Length = 328

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 100 PHPSQPLEH*QFAPHPQLPLQHDI 29
           PHP+QP++   + P P+ PLQ  +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|B1IX59|ZIPA_ECOLC Cell division protein zipA homolog
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=zipA PE=3 SV=1
          Length = 328

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 100 PHPSQPLEH*QFAPHPQLPLQHDI 29
           PHP+QP++   + P P+ PLQ  +
Sbjct: 119 PHPAQPVQQPAYQPQPEQPLQQPV 142


>sp|A1DBH2|MYO1_NEOFI Myosin-1 OS=Neosartorya fischeri (strain ATCC
            1020 / DSM 3700 / NRRL 181) GN=myoA PE=3 SV=1
          Length = 1250

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 229  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-SQPLEH*QFAPHP 53
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P +QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 52   QLP 44
              P
Sbjct: 1033 AAP 1035


>sp|P63392|Y1383_MYCBO Uncharacterized ABC transporter ATP-binding
           protein Mb1383 OS=Mycobacterium bovis GN=Mb1383 PE=3
           SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -2

Query: 166 QTEAVALRTRGASFDSTRLSVRPHPSQPL----------EH*QFAPHPQLPLQHDI 29
           +T  +A R    + D T L+VR HP +PL          +H  F   P +P+  D+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|P63391|Y1348_MYCTU Uncharacterized ABC transporter ATP-binding
           protein Rv1348/MT1390 OS=Mycobacterium tuberculosis
           GN=Rv1348 PE=3 SV=1
          Length = 859

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
 Frame = -2

Query: 166 QTEAVALRTRGASFDSTRLSVRPHPSQPL----------EH*QFAPHPQLPLQHDI 29
           +T  +A R    + D T L+VR HP +PL          +H  F   P +P+  D+
Sbjct: 574 RTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDV 629


>sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Aspergillus fumigatus GN=myoA PE=3
            SV=2
          Length = 1249

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 229  GEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHP-SQPLEH*QFAPHP 53
            GEP       TP+P+ +S    T+   LR  G     ++L+ RP P +QPL   +  P P
Sbjct: 975  GEPANSVSKPTPRPKQVSARPVTKGKLLRPGGPGGGPSKLAARPTPAAQPLP--RATPQP 1032

Query: 52   QLP 44
              P
Sbjct: 1033 AEP 1035
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 40.0
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_G21, 5'
         (476 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    34   4.2  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = -2

Query: 97  HPSQPLEH*QFAPHPQLPLQHDI 29
           HP QPL H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 256 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPLE 77
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 76  H 74
           H
Sbjct: 201 H 201