DK954058 |
Clone id |
TST39A01NGRL0019_G22 |
Library |
TST39 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_G22. 5' end sequence. |
Accession |
DK954058 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL553Contig1 |
Sequence |
GAAGCATGAATCAAAGTCTGAGAAGGTAGAGAATCTCAAGAGTTCATCTTTTGTCCCTAG GCTCCCAGCATCTAGAGTTTCTTGTGCTGCAAATGCCACTGTGAACAATGGTGCTCTCGG GGCTAGGGCGGTGATCACGCCATCCTTGGGCTCGGAAAAGCCCAACCGGACTCGAGCTAC AACCAAGGATCCCTCCTCCCCTGAGTTTCTTCCCATCCCTTCTTTTGAGGAGTGCTTTCC AAACAGCACCAAAGAAAGCAGGGAAATTGTGCATGAACCTACAGGTTCTGTTCTTCATGT ACCATTTAGGCGAGTGCATCTGTCTGGTGGGGAACCCCCTTTTGATACTTATGACACCAG TGGACCGCAGAATTTGAATCCCCATTCAGGTCTTCCGAAACTCCGCAAGTCATGGATAGA AAGGAGAGAAAAGAGGGGGGACAAAAGGTGCACACAAATGCATTATGCTAAGCAAGGAAC TGTAACTGAAGAGATGGTGTATTGTGCTGCTAGAGAGAACTTGAATCCAGACTTCGTTCG CTCAAAAGTGGCTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04Y23 |
Definition |
sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) |
Align length |
89 |
Score (bit) |
77.8 |
E-value |
3.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954058|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_G22, 5' (555 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Lepto... 78 3e-14 sp|Q04VF1|THIC_LEPBJ Thiamine biosynthesis protein thiC OS=Lepto... 78 3e-14 sp|Q8F7G5|THIC_LEPIN Thiamine biosynthesis protein thiC OS=Lepto... 72 2e-12 sp|Q72NZ8|THIC_LEPIC Thiamine biosynthesis protein thiC OS=Lepto... 72 2e-12 sp|Q5YNS3|THIC_NOCFA Thiamine biosynthesis protein thiC OS=Nocar... 71 4e-12 sp|P66911|THIC_MYCTU Thiamine biosynthesis protein thiC OS=Mycob... 68 3e-11 sp|A5TZE9|THIC_MYCTA Thiamine biosynthesis protein thiC OS=Mycob... 68 3e-11 sp|A1KFP5|THIC_MYCBP Thiamine biosynthesis protein thiC OS=Mycob... 68 3e-11 sp|P66912|THIC_MYCBO Thiamine biosynthesis protein thiC OS=Mycob... 68 3e-11 sp|Q9ZBL0|THIC_MYCLE Thiamine biosynthesis protein thiC OS=Mycob... 66 1e-10 sp|Q5QUD0|THIC_IDILO Thiamine biosynthesis protein thiC OS=Idiom... 64 6e-10 sp|A0PTS1|THIC_MYCUA Thiamine biosynthesis protein thiC OS=Mycob... 62 2e-09 sp|Q9KBJ4|THIC_BACHD Thiamine biosynthesis protein thiC OS=Bacil... 62 2e-09 sp|Q2JPK6|THIC_SYNJB Thiamine biosynthesis protein thiC OS=Synec... 61 3e-09 sp|Q5L325|THIC_GEOKA Thiamine biosynthesis protein thiC OS=Geoba... 61 3e-09 sp|Q2JY68|THIC_SYNJA Thiamine biosynthesis protein thiC OS=Synec... 61 4e-09 sp|P61424|THIC_CORDI Thiamine biosynthesis protein thiC OS=Coryn... 61 4e-09 sp|P61426|THIC_MYCPA Thiamine biosynthesis protein thiC OS=Mycob... 60 5e-09 sp|A0QLS0|THIC_MYCA1 Thiamine biosynthesis protein thiC OS=Mycob... 60 5e-09 sp|B0JSK4|THIC_MICAN Thiamine biosynthesis protein thiC OS=Micro... 60 7e-09 sp|A4IK74|THIC_GEOTN Thiamine biosynthesis protein thiC OS=Geoba... 60 7e-09 sp|Q7N963|THIC_PHOLL Thiamine biosynthesis protein thiC OS=Photo... 59 1e-08 sp|O67259|THIC_AQUAE Thiamine biosynthesis protein thiC OS=Aquif... 59 2e-08 sp|Q3ATM0|THIC_CHLCH Thiamine biosynthesis protein thiC OS=Chlor... 59 2e-08 sp|Q2L083|THIC_BORA1 Thiamine biosynthesis protein thiC OS=Borde... 59 2e-08 sp|Q3MGA3|THIC_ANAVT Thiamine biosynthesis protein thiC OS=Anaba... 58 4e-08 sp|Q8YY69|THIC_ANASP Thiamine biosynthesis protein thiC OS=Anaba... 58 4e-08 sp|Q2IID8|THIC_ANADE Thiamine biosynthesis protein thiC OS=Anaer... 57 5e-08 sp|Q8G7X1|THIEC_BIFLO Bifunctional protein thiEC OS=Bifidobacter... 57 6e-08 sp|Q3B2V9|THIC_PELLD Thiamine biosynthesis protein thiC OS=Pelod... 57 6e-08
>sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=thiC PE=3 SV=1 Length = 511
Score = 77.8 bits (190), Expect = 3e-14 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 4/89 (4%) Frame = +2
Query: 299 VPFRRVHLSGGEPPFDTYDTSGPQNLNPHS----GLPKLRKSWIERREKRGDKRCTQMHY 466 VP + + L+ G + +Y T G + S G+PK+RK WI R RGD +QM+Y Sbjct: 9 VPLKTIRLTDGTE-YQSYHTEGSLSDKKPSDYKNGIPKIRKEWIRTRLDRGDTNHSQMYY 67
Query: 467 AKQGTVTEEMVYCAARENLNPDFVRSKVA 553 AK+G +TEEM Y A REN+NP+FVR ++A Sbjct: 68 AKKGIITEEMRYVALRENMNPEFVRLEIA 96
>sp|Q04VF1|THIC_LEPBJ Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=thiC PE=3 SV=1 Length = 511
Score = 77.8 bits (190), Expect = 3e-14 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 4/89 (4%) Frame = +2
Query: 299 VPFRRVHLSGGEPPFDTYDTSGPQNLNPHS----GLPKLRKSWIERREKRGDKRCTQMHY 466 VP + + L+ G + +Y T G + S G+PK+RK WI R RGD +QM+Y Sbjct: 9 VPLKTIRLTDGTE-YQSYHTEGSLSDKKPSDYKNGIPKIRKEWIRTRLDRGDTNHSQMYY 67
Query: 467 AKQGTVTEEMVYCAARENLNPDFVRSKVA 553 AK+G +TEEM Y A REN+NP+FVR ++A Sbjct: 68 AKKGIITEEMRYVALRENMNPEFVRLEIA 96
>sp|Q8F7G5|THIC_LEPIN Thiamine biosynthesis protein thiC OS=Leptospira interrogans GN=thiC PE=3 SV=1 Length = 495
Score = 72.0 bits (175), Expect = 2e-12 Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +2
Query: 293 LHVPFRRVHLSGGEPPFDTYDT----SGPQNLNPHSGLPKLRKSWIERREKRGDKRCTQM 460 L +P++ + LS G + +Y T SG Q + +G+P RK WI++R + +QM Sbjct: 7 LQIPYKSIRLSDGTE-YQSYHTEGALSGKQPADYKNGIPAFRKEWIQKRFNHSNH--SQM 63
Query: 461 HYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 ++AK+G +TEEM Y A REN+ P+FVRS++A Sbjct: 64 YFAKKGIITEEMRYAAFRENMEPEFVRSEIA 94
>sp|Q72NZ8|THIC_LEPIC Thiamine biosynthesis protein thiC OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=thiC PE=3 SV=2 Length = 495
Score = 72.0 bits (175), Expect = 2e-12 Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +2
Query: 293 LHVPFRRVHLSGGEPPFDTYDT----SGPQNLNPHSGLPKLRKSWIERREKRGDKRCTQM 460 L +P++ + LS G + +Y T SG Q + +G+P RK WI++R + +QM Sbjct: 7 LQIPYKSIRLSDGTE-YQSYHTEGALSGKQPADYKNGIPAFRKEWIQKRFNHSNH--SQM 63
Query: 461 HYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 ++AK+G +TEEM Y A REN+ P+FVRS++A Sbjct: 64 YFAKKGIITEEMRYAAFRENMEPEFVRSEIA 94
>sp|Q5YNS3|THIC_NOCFA Thiamine biosynthesis protein thiC OS=Nocardia farcinica GN=thiC PE=3 SV=1 Length = 547
Score = 70.9 bits (172), Expect = 4e-12 Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 5/92 (5%) Frame = +2
Query: 293 LHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRKSWIERREKRGDKRCTQ 457 L +P RR++L+ GE FD YDTSGP ++ +GLPKLR SW ++ G + TQ Sbjct: 32 LRIPVRRINLTNGET-FDVYDTSGPYTDENATIDLEAGLPKLRDSW-DKPTVAGPR--TQ 87
Query: 458 MHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 + +A+ G VT EM + AARE + P+ VR++VA Sbjct: 88 LAWARAGIVTPEMRFIAAREGVEPELVRAEVA 119
>sp|P66911|THIC_MYCTU Thiamine biosynthesis protein thiC OS=Mycobacterium tuberculosis GN=thiC PE=3 SV=1 Length = 547
Score = 68.2 bits (165), Expect = 3e-11 Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Frame = +2
Query: 245 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 409 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGDH-FDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 410 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 R R TQ+ A+ G +T EM + AARE+++ + VR +VA Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAELVRDEVA 115
>sp|A5TZE9|THIC_MYCTA Thiamine biosynthesis protein thiC OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=thiC PE=3 SV=1 Length = 547
Score = 68.2 bits (165), Expect = 3e-11 Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Frame = +2
Query: 245 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 409 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGDH-FDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 410 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 R R TQ+ A+ G +T EM + AARE+++ + VR +VA Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAELVRDEVA 115
>sp|A1KFP5|THIC_MYCBP Thiamine biosynthesis protein thiC OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=thiC PE=3 SV=1 Length = 547
Score = 68.2 bits (165), Expect = 3e-11 Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Frame = +2
Query: 245 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 409 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGDH-FDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 410 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 R R TQ+ A+ G +T EM + AARE+++ + VR +VA Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAELVRDEVA 115
>sp|P66912|THIC_MYCBO Thiamine biosynthesis protein thiC OS=Mycobacterium bovis GN=thiC PE=3 SV=1 Length = 547
Score = 68.2 bits (165), Expect = 3e-11 Identities = 45/108 (41%), Positives = 60/108 (55%), Gaps = 5/108 (4%) Frame = +2
Query: 245 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 409 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGDH-FDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 410 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 R R TQ+ A+ G +T EM + AARE+++ + VR +VA Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAELVRDEVA 115
>sp|Q9ZBL0|THIC_MYCLE Thiamine biosynthesis protein thiC OS=Mycobacterium leprae GN=thiC PE=3 SV=1 Length = 547
Score = 66.2 bits (160), Expect = 1e-10 Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Frame = +2
Query: 239 PNSTKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKL 403 P S+K RE+ + G L VPFRRVHLS G FD YDTSGP +N +GLP Sbjct: 19 PGSSKAYREVANPDGGPSLRVPFRRVHLSTG-AHFDLYDTSGPYTDPDAVINLTAGLPP- 76
Query: 404 RKSWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENLNPDFVRSKVA 553 R I R TQ+ A+ G +T EM + A RE + + VR +VA Sbjct: 77 RPGVIR-------DRGTQLQRARAGEITAEMAFIADREGMPAELVRVEVA 119
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PJ85 |
Definition |
tr|A9PJ85|A9PJ85_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
163 |
Score (bit) |
205.0 |
E-value |
1.0e-51 |
Report |
|