DK954141 |
Clone id |
TST39A01NGRL0019_K12 |
Library |
TST39 |
Length |
535 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_K12. 5' end sequence. |
Accession |
DK954141 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL94Contig1 |
Sequence |
GGGTATTGAGGATTCCACATCCCACTATCCCGCTTCGTCTTCCTCCTTTCTCGCTCTCTG AGCTTTTCGGCTATGGCGTCTTGTAGCTTCAGTCACTGCTCTATTTCTACCCTTGAAAAT CAGCGTGTGCTTGCAAAGACCCCCTCTTCATCCGTATCTGCTGCTCCCACTTCGACTCGT GGATTAAGTTCTTCTGCCTCTTTCGCGCAGCTAAGCTTTCAGGAAGGAGTCTGCCTTCGA GGTGTTGCTTCTCGCAGAAGTGTGCACCTTCTTGTTCGTGCTGCTCGTGAGAAGTTTGAG CGCAATAAGCCGCATGTGAACATTGGCACTATTGGCCATGTCGACCACGGGAAAACGACT CTCACTGCTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAAAGATAT GATCAGATTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACCGCAGTG GTCGAATTATGAGTCTCCCAAACAGACAACTATGCACACGTGGGACTGCCCTGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P68158 |
Definition |
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum |
Align length |
95 |
Score (bit) |
107.0 |
E-value |
3.0e-23 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954141|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_K12, 5' (535 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 107 3e-23 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 107 3e-23 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 105 1e-22 sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 105 1e-22 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 104 3e-22 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 104 3e-22 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 101 2e-21 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 100 8e-21 sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Meso... 99 1e-20 sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostr... 98 2e-20 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 98 3e-20 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 98 3e-20 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 98 3e-20 sp|A1KRF9|EFTU_NEIMF Elongation factor Tu OS=Neisseria meningiti... 97 4e-20 sp|P64027|EFTU_NEIMB Elongation factor Tu OS=Neisseria meningiti... 97 4e-20 sp|P64026|EFTU_NEIMA Elongation factor Tu OS=Neisseria meningiti... 97 4e-20 sp|P48864|EFTU_NEIGO Elongation factor Tu OS=Neisseria gonorrhoe... 97 4e-20 sp|Q5F5Q8|EFTU_NEIG1 Elongation factor Tu OS=Neisseria gonorrhoe... 97 4e-20 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 97 6e-20 sp|Q06J54|EFTU_BIGNA Elongation factor Tu, chloroplastic OS=Bige... 96 8e-20 sp|Q3SLQ1|EFTU_THIDA Elongation factor Tu OS=Thiobacillus denitr... 96 1e-19 sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aroma... 96 1e-19 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 96 1e-19 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 96 1e-19 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 96 1e-19 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 96 1e-19 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 96 1e-19 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 96 1e-19 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 96 1e-19 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 96 1e-19
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 107 bits (268), Expect = 3e-23 Identities = 58/95 (61%), Positives = 64/95 (67%) Frame = +1
Query: 247 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 426 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 427 IDAAPEERARGITINTAVVEL*VSQTDNYAHVGLP 531 IDAAPEERARGITINTA VE ++ +YAHV P Sbjct: 119 IDAAPEERARGITINTATVEY-ETENRHYAHVDCP 152
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 107 bits (268), Expect = 3e-23 Identities = 58/95 (61%), Positives = 64/95 (67%) Frame = +1
Query: 247 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 426 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 427 IDAAPEERARGITINTAVVEL*VSQTDNYAHVGLP 531 IDAAPEERARGITINTA VE ++ +YAHV P Sbjct: 119 IDAAPEERARGITINTATVEY-ETENRHYAHVDCP 152
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 105 bits (263), Expect = 1e-22 Identities = 56/86 (65%), Positives = 61/86 (70%) Frame = +1
Query: 274 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 453 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 75 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERA 134
Query: 454 RGITINTAVVEL*VSQTDNYAHVGLP 531 RGITINTA VE ++ +YAHV P Sbjct: 135 RGITINTATVEY-ETENRHYAHVDCP 159
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 105 bits (262), Expect = 1e-22 Identities = 56/86 (65%), Positives = 61/86 (70%) Frame = +1
Query: 274 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 453 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA 128
Query: 454 RGITINTAVVEL*VSQTDNYAHVGLP 531 RGITINTA VE ++ +YAHV P Sbjct: 129 RGITINTATVEY-ETENRHYAHVDCP 153
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 104 bits (259), Expect = 3e-22 Identities = 55/86 (63%), Positives = 61/86 (70%) Frame = +1
Query: 274 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 453 VRAAR KFER KPH+NIGTIGHVDHGK SAPK+YD+IDAAPEERA Sbjct: 78 VRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDEIDAAPEERA 137
Query: 454 RGITINTAVVEL*VSQTDNYAHVGLP 531 RGITINTA VE ++T +YAHV P Sbjct: 138 RGITINTATVEY-ETETRHYAHVDCP 162
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 104 bits (259), Expect = 3e-22 Identities = 55/86 (63%), Positives = 61/86 (70%) Frame = +1
Query: 274 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 453 VRAAR KFER KPHVNIGTIGHVDHGK + SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERA 128
Query: 454 RGITINTAVVEL*VSQTDNYAHVGLP 531 RGITINTA VE ++ +YAHV P Sbjct: 129 RGITINTATVEY-ETENRHYAHVDCP 153
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 101 bits (252), Expect = 2e-21 Identities = 57/95 (60%), Positives = 64/95 (67%) Frame = +1
Query: 247 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 426 ++RRS VRAAR KFER KPHVNIGTIGHVDHGK S S K+YD+ Sbjct: 59 STRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Query: 427 IDAAPEERARGITINTAVVEL*VSQTDNYAHVGLP 531 IDAAPEERARGITINTA VE ++ +YAHV P Sbjct: 117 IDAAPEERARGITINTATVEY-ETENRHYAHVDCP 150
>sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1 Length = 410
Score = 99.8 bits (247), Expect = 8e-21 Identities = 52/83 (62%), Positives = 58/83 (69%) Frame = +1
Query: 283 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 462 AREKFER KPHVNIGTIGHVDHGK + G+ KRYD+IDAAPEERARGI Sbjct: 2 AREKFERKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDEIDAAPEERARGI 61
Query: 463 TINTAVVEL*VSQTDNYAHVGLP 531 TINTA VE ++ +YAHV P Sbjct: 62 TINTAHVEY-ETEKRHYAHVDCP 83
>sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1 Length = 410
Score = 99.0 bits (245), Expect = 1e-20 Identities = 51/83 (61%), Positives = 58/83 (69%) Frame = +1
Query: 283 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 462 AREKFER KPH+NIGTIGHVDHGK G + KRYD+IDAAPEE+ARGI Sbjct: 2 AREKFERKKPHINIGTIGHVDHGKTTLTAAITMALAVGTGKSGKRYDEIDAAPEEKARGI 61
Query: 463 TINTAVVEL*VSQTDNYAHVGLP 531 TINTA VE ++T +YAHV P Sbjct: 62 TINTAHVEY-ETETRHYAHVDCP 83
>sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1 Length = 409
Score = 98.2 bits (243), Expect = 2e-20 Identities = 51/83 (61%), Positives = 59/83 (71%) Frame = +1
Query: 283 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 462 AREKFER KPHVNIGTIGHVDHGK + GSA K+YD+ID++PEE+ARGI Sbjct: 2 AREKFERTKPHVNIGTIGHVDHGKTTLTAAITMAMAARGGSAGKKYDEIDSSPEEKARGI 61
Query: 463 TINTAVVEL*VSQTDNYAHVGLP 531 TINTA VE + T +YAHV P Sbjct: 62 TINTAHVEY-ETATRHYAHVDCP 83
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TFK5 |
Definition |
tr|B6TFK5|B6TFK5_MAIZE Elongation factor Tu OS=Zea mays |
Align length |
95 |
Score (bit) |
114.0 |
E-value |
2.0e-24 |
Report |
 |