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NBDC - LSDB Archive
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DK954142
Clone id TST39A01NGRL0019_K13
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_K13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTC
GGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCT
CAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAG
CCGTGTGATCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTC
CTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAA
AGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCA
CGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTG
CCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAAGGAGTATCCTGAAG
CCTTCATCCGCGTGCTGGGCTTTGACGCTAAAGAGGCAGGTGCAGGTCTCCGGCTTCCTT
GTCCAGAA
■■Homology search results ■■ -
sp_hit_id O64416
Definition sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea
Align length 118
Score (bit) 152.0
E-value 1.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954142|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_K13, 5'
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   152   1e-36
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   151   2e-36
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   142   4e-36
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   142   1e-35
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   148   1e-35
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   148   2e-35
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   146   7e-35
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...   140   1e-34
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...   140   1e-34
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   145   1e-34
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   145   1e-34
sp|Q41373|RBS_SACHY Ribulose bisphosphate carboxylase small chai...   144   2e-34
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   144   2e-34
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   144   2e-34
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   144   2e-34
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   144   3e-34
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   142   8e-34
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...   142   8e-34
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   142   8e-34
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   142   8e-34
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   141   2e-33
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha...   141   2e-33
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   141   2e-33
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   141   2e-33
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   141   2e-33
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   140   3e-33
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...   140   4e-33
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   140   4e-33
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   140   4e-33
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   140   4e-33

>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  152 bits (384), Expect = 1e-36
 Identities = 70/118 (59%), Positives = 84/118 (71%)
 Frame = +2

Query: 113 SGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFM 292
           +GLKA              +NGSRV  M VW+PY+N KFETLSYLPPLS + +AKQ+D++
Sbjct: 32  AGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYV 91

Query: 293 VRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 466
           ++ GW PCIEFD  G+V RE     GYYDGRYW MWKLPMFGC D+A+VLREI EC K
Sbjct: 92  IKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKK 149


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  151 bits (381), Expect = 2e-36
 Identities = 69/120 (57%), Positives = 85/120 (70%)
 Frame = +2

Query: 107 SFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 286
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 287 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 466
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  142 bits (358), Expect(2) = 4e-36
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 4/125 (3%)
 Frame = +2

Query: 98  LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQ 268
           L+  F+GLK++  F   K  N +    SNGSRV  M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 269 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 445
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 446 EIAEC 460
           E+AEC
Sbjct: 141 EVAEC 145



 Score = 30.0 bits (66), Expect(2) = 4e-36
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +3

Query: 468 EYPEAFIRVLGFD 506
           EYPEAFIR++GFD
Sbjct: 148 EYPEAFIRIIGFD 160


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score =  142 bits (357), Expect(2) = 1e-35
 Identities = 66/122 (54%), Positives = 89/122 (72%), Gaps = 5/122 (4%)
 Frame = +2

Query: 110 FSGLKATTLF--APKSPNPLA--ISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAK 277
           F+GLK++  F    K+ N +    SNG RV  M VW P   KKFETLSYLPPL+ EQ+AK
Sbjct: 26  FTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAK 85

Query: 278 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           +V++++RKGW PC+EF+ + G VYRE+    GYYDGRYW MW+LP+FG  D++ VL+E+A
Sbjct: 86  EVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELA 145

Query: 455 EC 460
           +C
Sbjct: 146 DC 147



 Score = 28.5 bits (62), Expect(2) = 1e-35
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 447 KLQSAPKEYPEAFIRVLGFD 506
           +L     EYP++FIR++GFD
Sbjct: 143 ELADCKAEYPDSFIRIIGFD 162


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
          Length = 170

 Score =  148 bits (374), Expect = 1e-35
 Identities = 70/129 (54%), Positives = 86/129 (66%), Gaps = 3/129 (2%)
 Frame = +2

Query: 110 FSGLKATTLF--APKSPNPLA-ISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 280
           F GLK+T     A +S   L  +SNG R+  M VW  Y NKKFETLSYLPPLS++ + KQ
Sbjct: 17  FQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQ 76

Query: 281 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 460
           VD+++R GW PC+EF K+G VYRE+     YYDGRYW MWKLPMFGC DA  V +E+ E 
Sbjct: 77  VDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEA 136

Query: 461 AKGVS*SLH 487
            K    + H
Sbjct: 137 IKSYPDAFH 145



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
 Frame = +3

Query: 423 KMPLLCC-------VKLQSAPKEYPEAFIRVLGFD 506
           K+P+  C        +LQ A K YP+AF RV+GFD
Sbjct: 117 KLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFD 151


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  148 bits (373), Expect = 2e-35
 Identities = 69/128 (53%), Positives = 89/128 (69%), Gaps = 5/128 (3%)
 Frame = +2

Query: 98  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVIAMLVWKPYDNKKFETLSYLPPLSSE 265
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 266 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 442
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 443 REIAECAK 466
           +E+ EC K
Sbjct: 142 KEVGECKK 149



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
 Frame = +3

Query: 423 KMPLLCCV-------KLQSAPKEYPEAFIRVLGFD 506
           K+P+  C        ++    KEYP AFIRV+GFD
Sbjct: 128 KLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFD 162


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  146 bits (368), Expect = 7e-35
 Identities = 69/125 (55%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
 Frame = +2

Query: 107 SFSGLKATTLFAPKSPNPLAI----SNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIA 274
           SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 275 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 451
           K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC DA  VL E+
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 452 AECAK 466
            E  K
Sbjct: 145 QEAKK 149



 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 7/35 (20%)
 Frame = +3

Query: 423 KMPLLCCV-------KLQSAPKEYPEAFIRVLGFD 506
           K+P+  C        ++Q A K YP+A+IR++GFD
Sbjct: 128 KLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFD 162


>sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain
           3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1
          Length = 180

 Score =  140 bits (353), Expect(2) = 1e-34
 Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 4/120 (3%)
 Frame = +2

Query: 110 FSGLKATTLFAPKSPNP---LAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 280
           F GLK+ T F  K  N       SNG RV  M VW P   KKFETLSYLPPL+ +Q+ K+
Sbjct: 27  FGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKE 86

Query: 281 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 457
           V++++RKGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFG  DA+ VL+E+ E
Sbjct: 87  VEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146



 Score = 26.9 bits (58), Expect(2) = 1e-34
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 KLQSAPKEYPEAFIRVLGFD 506
           +L      YP+AF+R++GFD
Sbjct: 143 ELDEVVAAYPQAFVRIIGFD 162


>sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain
           3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1
          Length = 180

 Score =  140 bits (353), Expect(2) = 1e-34
 Identities = 68/120 (56%), Positives = 83/120 (69%), Gaps = 4/120 (3%)
 Frame = +2

Query: 110 FSGLKATTLFAPKSPNP---LAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 280
           F GLK+ T F  K  N       SNG RV  M VW P   KKFETLSYLPPL+ +Q+ K+
Sbjct: 27  FGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKE 86

Query: 281 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 457
           V++++RKGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFG  DA+ VL+E+ E
Sbjct: 87  VEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDE 146



 Score = 26.9 bits (58), Expect(2) = 1e-34
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 KLQSAPKEYPEAFIRVLGFD 506
           +L      YP+AF+R++GFD
Sbjct: 143 ELDEVVAAYPQAFVRIIGFD 162


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  145 bits (366), Expect = 1e-34
 Identities = 71/123 (57%), Positives = 90/123 (73%), Gaps = 4/123 (3%)
 Frame = +2

Query: 110 FSGLKATTLF--APKSPNPLAI-SNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 280
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 281 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 457
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 458 CAK 466
             K
Sbjct: 150 AKK 152



 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 7/35 (20%)
 Frame = +3

Query: 423 KMPLLCCV-------KLQSAPKEYPEAFIRVLGFD 506
           K+P+  C        +L+ A K YP++FIR++GFD
Sbjct: 131 KLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFD 165
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 123
Score (bit) 235.0
E-value 4.0e-61
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954142|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_K13, 5'
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   235   4e-61
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   165   4e-40
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   162   3e-39
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   160   9e-39
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   160   9e-39
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   160   9e-39
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   158   4e-38
tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small c...   157   5e-37
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   155   2e-36
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   154   2e-36
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   154   3e-36
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   152   1e-35
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   152   1e-35
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   152   1e-35
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   151   2e-35
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   150   3e-35
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   149   7e-35
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   149   7e-35
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   149   7e-35
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   149   7e-35
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   149   1e-34
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   149   1e-34
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   149   1e-34
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic...   142   1e-34
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   148   2e-34
tr|B4FSJ3|B4FSJ3_MAIZE Putative uncharacterized protein OS=Zea m...   148   2e-34
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   147   4e-34
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   146   8e-34
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   146   8e-34
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   145   1e-33

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  235 bits (600), Expect(2) = 4e-61
 Identities = 107/123 (86%), Positives = 116/123 (94%)
 Frame = +2

Query: 98  LSKSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAK 277
           LSKSFSGLKA TLFAPK  NPLAISNGSR+ AMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 278 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 457
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 458 CAK 466
           CAK
Sbjct: 142 CAK 144



 Score = 23.9 bits (50), Expect(2) = 4e-61
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +1

Query: 511 KRQVQVSGFLVQ 546
           KRQVQV+GFLV+
Sbjct: 159 KRQVQVAGFLVK 170



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
 Frame = +3

Query: 423 KMPLLCCV-------KLQSAPKEYPEAFIRVLGFDAK 512
           K+P+  C        ++    KEYP AFIRVLGFDAK
Sbjct: 123 KLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAK 159


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  165 bits (417), Expect(2) = 4e-40
 Identities = 79/122 (64%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 455 EC 460
           EC
Sbjct: 147 EC 148



 Score = 24.3 bits (51), Expect(2) = 4e-40
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 154 SCWVRVLGFDSKKQVQICGFLV 175


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  162 bits (409), Expect(2) = 3e-39
 Identities = 78/122 (63%), Positives = 90/122 (73%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 455 EC 460
           EC
Sbjct: 147 EC 148



 Score = 24.3 bits (51), Expect(2) = 3e-39
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 154 SCWVRVLGFDSKKQVQICGFLV 175


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  160 bits (405), Expect(2) = 9e-39
 Identities = 75/122 (61%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 455 EC 460
           EC
Sbjct: 182 EC 183



 Score = 24.3 bits (51), Expect(2) = 9e-39
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 189 SCWVRVLGFDSKKQVQICGFLV 210


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  160 bits (405), Expect(2) = 9e-39
 Identities = 75/122 (61%), Positives = 90/122 (73%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 455 EC 460
           EC
Sbjct: 152 EC 153



 Score = 24.3 bits (51), Expect(2) = 9e-39
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 159 SCWVRVLGFDSKKQVQICGFLV 180


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  160 bits (405), Expect(2) = 9e-39
 Identities = 76/122 (62%), Positives = 90/122 (73%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 455 EC 460
           EC
Sbjct: 152 EC 153



 Score = 24.3 bits (51), Expect(2) = 9e-39
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 159 SCWVRVLGFDSKKQVQICGFLV 180


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  158 bits (399), Expect(2) = 4e-38
 Identities = 73/122 (59%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 455 EC 460
           EC
Sbjct: 151 EC 152



 Score = 24.3 bits (51), Expect(2) = 4e-38
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +1

Query: 490 ACWALTL----KRQVQVSGFLV 543
           +CW   L    K+QVQ+ GFLV
Sbjct: 158 SCWVRVLGFDSKKQVQICGFLV 179


>tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8310 PE=3 SV=1
          Length = 156

 Score =  157 bits (396), Expect = 5e-37
 Identities = 74/121 (61%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 36  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 95

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 454
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 96  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 155

Query: 455 E 457
           E
Sbjct: 156 E 156


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  155 bits (391), Expect = 2e-36
 Identities = 71/121 (58%), Positives = 87/121 (71%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 463
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 464 K 466
           K
Sbjct: 152 K 152


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  154 bits (390), Expect = 2e-36
 Identities = 72/121 (59%), Positives = 87/121 (71%)
 Frame = +2

Query: 104 KSFSGLKATTLFAPKSPNPLAISNGSRVIAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 283
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 284 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 463
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 464 K 466
           K
Sbjct: 152 K 152