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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954154
Clone id TST39A01NGRL0019_L02
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_L02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCGAAGAGAGAGAGGAAGCTCGCTCTGAGGAACGCGCAAGAAGCCAGCTCCGTCCGCCA
TAGCCGCATAGTTTCTGTTTCCAATTACCCGCTTTCTCCACACTCTAGGCTTGCATTTCT
CCCTCTTTTTCTTCGTGGGTTCCATGGCATCTTACTCCTGCTGCCTCTCAGGCCGTTTCG
GAGCGAAGGCAGTCCTTCCGTTTACGTGAATTTTGCAGTTTACCCGCTTCTAGTTAAAGT
CTGTGCAGAGCGCCCCCCCCCCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTACTTGCCCACGTTGTTAACGCTGCAGCCATGGAAGCTTCAACCATGCCCAG
CACAGTTGAGGAGGTGTTTGAAGATTATCAGGGTCGGCGGGCCGGTCTGATCAGAGCCCT
CACAACGTGAATGATTTCTTCGAGCAATGCGATCCAGAAAAGGAAAACCTATGCTTGTAT
GGCTTATCCGAAAAGAACATGGGAAGTTGCTTTCCCTGCTGAGGGAAATTCCGCC
■■Homology search results ■■ -
sp_hit_id O81488
Definition sp|O81488|Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana
Align length 57
Score (bit) 52.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954154|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_L02, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81488|Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsi...    53   1e-06
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2...    30   9.7  

>sp|O81488|Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis
           thaliana GN=At5g26210 PE=1 SV=2
          Length = 255

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 356 PSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           P TVEEVF D++GRRAG+I+ALTT +          K   C+  +P   WEV  PAE
Sbjct: 9   PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAE 65


>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
          Length = 5141

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 121  PSFSSWVPWHLTPAASQAVSERRQSFRLREFCSLPAS 231
            P++SSW PW +  A+       R+ F +R   + P S
Sbjct: 3169 PAWSSWTPWSVCSASCSPARRHRRRFCVRPSTTAPFS 3205
tr_hit_id Q40359
Definition tr|Q40359|Q40359_MEDSA Alfin-1 OS=Medicago sativa
Align length 63
Score (bit) 58.9
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954154|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_L02, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q40359|Q40359_MEDSA Alfin-1 OS=Medicago sativa PE=2 SV=1            59   2e-07
tr|B7FL42|B7FL42_MEDTR Putative uncharacterized protein OS=Medic...    57   5e-07
tr|A0FK65|A0FK65_MEDTR PHD5 OS=Medicago truncatula PE=2 SV=1           57   5e-07
tr|A9S186|A9S186_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|Q06A73|Q06A73_SOYBN PHD1 OS=Glycine max PE=2 SV=1                   57   8e-07
tr|Q8S8M9|Q8S8M9_ARATH Putative PHD-type zinc finger protein OS=...    56   1e-06
tr|Q8LAH0|Q8LAH0_ARATH Putative PHD-type zinc finger protein OS=...    56   1e-06
tr|Q06A76|Q06A76_SOYBN PHD4 OS=Glycine max PE=2 SV=1                   56   1e-06
tr|A9S7D6|A9S7D6_PHYPA Predicted protein OS=Physcomitrella paten...    56   1e-06
tr|A7QHQ9|A7QHQ9_VITVI Chromosome chr8 scaffold_99, whole genome...    56   1e-06
tr|Q94LL0|Q94LL0_ORYSA Putative nucleic acid binding protein OS=...    55   2e-06
tr|Q6YTY3|Q6YTY3_ORYSJ Os07g0608400 protein OS=Oryza sativa subs...    55   2e-06
tr|B8B8C5|B8B8C5_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A7QCE8|A7QCE8_VITVI Chromosome undetermined scaffold_77, whol...    55   2e-06
tr|Q06A75|Q06A75_SOYBN PHD5 OS=Glycine max PE=2 SV=1                   55   2e-06
tr|B7FIN7|B7FIN7_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|A7L5U6|A7L5U6_WHEAT PHD zinc finger protein OS=Triticum aesti...    55   2e-06
tr|A0FK62|A0FK62_MEDTR PHD1 OS=Medicago truncatula PE=2 SV=1           55   2e-06
tr|Q60DW3|Q60DW3_ORYSJ Os05g0419100 protein OS=Oryza sativa subs...    54   4e-06
tr|A2Y4R8|A2Y4R8_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|Q8H383|Q8H383_ORYSJ Os07g0233300 protein OS=Oryza sativa subs...    54   5e-06
tr|Q7XHN6|Q7XHN6_ORYSJ cDNA clone:002-176-E03, full insert seque...    54   5e-06
tr|B8B8I3|B8B8I3_ORYSI Putative uncharacterized protein OS=Oryza...    54   5e-06
tr|B6TG72|B6TG72_MAIZE PHD finger protein OS=Zea mays PE=2 SV=1        54   5e-06
tr|B4FVQ4|B4FVQ4_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|A7P6L5|A7P6L5_VITVI Chromosome chr9 scaffold_7, whole genome ...    54   5e-06
tr|A5AQG6|A5AQG6_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|Q5XEM9|Q5XEM9_ARATH At5g20510 OS=Arabidopsis thaliana PE=2 SV=1     54   7e-06
tr|A9SNB6|A9SNB6_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|A7PE09|A7PE09_VITVI Chromosome chr11 scaffold_13, whole genom...    54   7e-06

>tr|Q40359|Q40359_MEDSA Alfin-1 OS=Medicago sativa PE=2 SV=1
          Length = 257

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 MEASTMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAF 514
           M    +P TVEEVF DY+GRRAGLI+ALTT +      +   K   C+  +P  TWEV  
Sbjct: 4   MAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWEVNL 63

Query: 515 PAE 523
           P E
Sbjct: 64  PVE 66


>tr|B7FL42|B7FL42_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 256

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 MEASTMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAF 514
           M    +P TVEEVF DY+GRRAGLI+ALTT +          K   C+  +P  TWEV  
Sbjct: 4   MAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNL 63

Query: 515 PAE 523
           P E
Sbjct: 64  PVE 66


>tr|A0FK65|A0FK65_MEDTR PHD5 OS=Medicago truncatula PE=2 SV=1
          Length = 264

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 MEASTMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAF 514
           M    +P TVEEVF DY+GRRAGLI+ALTT +          K   C+  +P  TWEV  
Sbjct: 1   MAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNL 60

Query: 515 PAE 523
           P E
Sbjct: 61  PVE 63


>tr|A9S186|A9S186_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122808 PE=4 SV=1
          Length = 251

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +2

Query: 347 STMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           ST P +VEEVF+D++GRRAG+++ALTT +          K   C+  +P+ TWEV  PAE
Sbjct: 7   STNPRSVEEVFKDFRGRRAGMLKALTTEVEEFYRQCDPEKENLCLYGFPEETWEVNLPAE 66


>tr|Q06A73|Q06A73_SOYBN PHD1 OS=Glycine max PE=2 SV=1
          Length = 253

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 356 PSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           P TVEEVF D++GRRAGLI+ALTT +    N     K   C+  +P   WEV  PAE
Sbjct: 8   PRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAE 64


>tr|Q8S8M9|Q8S8M9_ARATH Putative PHD-type zinc finger protein
           OS=Arabidopsis thaliana GN=At2g02470 PE=2 SV=1
          Length = 256

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 353 MPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           +P TVEEVF D++GRRAGLI+ALT  M+         K   C+   P  TWEV  P E
Sbjct: 8   IPRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVE 65


>tr|Q8LAH0|Q8LAH0_ARATH Putative PHD-type zinc finger protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 256

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 353 MPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           +P TVEEVF D++GRRAGLI+ALT  M+         K   C+   P  TWEV  P E
Sbjct: 8   IPRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWEVNLPVE 65


>tr|Q06A76|Q06A76_SOYBN PHD4 OS=Glycine max PE=2 SV=1
          Length = 254

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 MEASTMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAF 514
           MEA   P TVEEVF D++GRRA LI+ALTT +          K   C+  +P   WEV  
Sbjct: 1   MEAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNL 60

Query: 515 PAE 523
           PAE
Sbjct: 61  PAE 63


>tr|A9S7D6|A9S7D6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125061 PE=4 SV=1
          Length = 252

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
 Frame = +2

Query: 347 STMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           ST P +V+EVF+D++GRRAG+++ALT+ +          K   C+  YP+ TWEV  PAE
Sbjct: 7   STNPRSVDEVFKDFRGRRAGMLKALTSEVEEFYRQCDPEKENLCLYGYPEETWEVNLPAE 66


>tr|A7QHQ9|A7QHQ9_VITVI Chromosome chr8 scaffold_99, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038887001
           PE=4 SV=1
          Length = 243

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 347 STMPSTVEEVFEDYQGRRAGLIRALTT*MISSSNAIQKRKTYACM-AYPKRTWEVAFPAE 523
           S+ P TVEE+F+DY GRRAG++RALT  +          K   C+  +P  TWEV  PAE
Sbjct: 7   SSSPRTVEEIFKDYSGRRAGVVRALTYDVDEFYKLCDPEKENLCLYGHPNDTWEVTLPAE 66