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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954157
Clone id TST39A01NGRL0019_L05
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_L05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTGGATCTGTGGTCGATCGCTTGTTTGCTCGATCTGCTAACTACCCATTGTCCGCTTGC
TTCTCAAATTTCCCTGTACATTGACCTTACCGCAGTCTCGATGAGGGATCCTTTGTGCTT
TCGGCACAGTGAACATGGCGATTTTTTGCTTTTAGGCAGCTCATTTGAAGGTCTCAAAGA
AGACTCATCTCATCAAAGCACAAATTGAAGAATCTTCCCGCTATCAGTGCAATGCTGGTC
CAAGAAGAGCCCTCAAAACCCCCTGAAGCTTCAAAGCACAAGAATGAAGATGGCGATGAA
GAGGAAGAAGAGGAGGATAATGCAGCAGCTGCCCTTCTGCCTCCTGAGCCTTCTCAACAC
GAAAAGGGCCCTGGTAATTGGGATAAATTCACAGAACACTTTCCCAAGCTAGTCATCTTT
GCCCTTCTGTGCTTAAGTGCTTTCATTTTGATCCTTGTAAGAAACCGCAGCGAAACAGGC
GCCATTCTGTGCATTGAATCCCAACTCTCAAAAGAAGCCGAAGGCATCCCATACCCATCT
ATAAACTTTAGAAGTGTTAAGCGAATTGGGCCAGACACTGGTGTATTTTC
■■Homology search results ■■ -
sp_hit_id Q5FVQ0
Definition sp|Q5FVQ0|S39A8_RAT Zinc transporter ZIP8 OS=Rattus norvegicus
Align length 32
Score (bit) 30.0
E-value 9.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954157|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_L05, 5'
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVQ0|S39A8_RAT Zinc transporter ZIP8 OS=Rattus norvegicus G...    30   9.0  

>sp|Q5FVQ0|S39A8_RAT Zinc transporter ZIP8 OS=Rattus norvegicus
           GN=Slc39a8 PE=2 SV=1
          Length = 462

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 396 TLSQASHLCPSVLKCFHFDPCKKPQRNRRHSV 491
           T S  + +CP++L+  +F PC+ PQ   +HSV
Sbjct: 93  TSSNFTAICPAILQQLNFHPCEDPQ---KHSV 121
tr_hit_id A9SCA3
Definition tr|A9SCA3|A9SCA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 43.5
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954157|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_L05, 5'
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SCA3|A9SCA3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.009
tr|A7PWF9|A7PWF9_VITVI Chromosome chr8 scaffold_34, whole genome...    39   0.17 
tr|A5AJ00|A5AJ00_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|O22943|O22943_ARATH Expressed protein (Putative uncharacteriz...    39   0.29 
tr|A7Q247|A7Q247_VITVI Chromosome chr13 scaffold_45, whole genom...    35   3.2  
tr|A5AD91|A5AD91_VITVI Putative uncharacterized protein OS=Vitis...    35   3.2  
tr|A8FYV1|A8FYV1_SHESH Peptidase M17, leucyl aminopeptidase doma...    35   4.1  
tr|B6MTA6|B6MTA6_BRAFL Putative uncharacterized protein OS=Branc...    34   7.1  
tr|Q7M8Y1|Q7M8Y1_WOLSU TRANSPORTER, NADC FAMILY OS=Wolinella suc...    33   9.2  

>tr|A9SCA3|A9SCA3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127388 PE=4 SV=1
          Length = 732

 Score = 43.5 bits (101), Expect = 0.009
 Identities = 22/62 (35%), Positives = 37/62 (59%)
 Frame = +1

Query: 373 GNWDKFTEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFR 552
           G W    E+  K+VI   + LSA +LI++ N  E  A++C E+ +++E + IPYP +N  
Sbjct: 3   GAW--LMENLSKVVIVVFVFLSALVLIVMLNYGEQSALICAEA-VAEELQRIPYPDLNLN 59

Query: 553 SV 558
            +
Sbjct: 60  HI 61


>tr|A7PWF9|A7PWF9_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025596001
           PE=4 SV=1
          Length = 762

 Score = 39.3 bits (90), Expect = 0.17
 Identities = 21/57 (36%), Positives = 35/57 (61%)
 Frame = +1

Query: 388 FTEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFRSV 558
           F+E+  K+V  +LL  +   L  +RN ++T A++  E+Q +K  E I +P IN+ SV
Sbjct: 39  FSENLYKIVTISLLIATVAALFFLRNVADTAALVSYETQ-AKSLEKIEFPQINWNSV 94


>tr|A5AJ00|A5AJ00_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011873 PE=4 SV=1
          Length = 762

 Score = 39.3 bits (90), Expect = 0.17
 Identities = 21/57 (36%), Positives = 35/57 (61%)
 Frame = +1

Query: 388 FTEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFRSV 558
           F+E+  K+V  +LL  +   L  +RN ++T A++  E+Q +K  E I +P IN+ SV
Sbjct: 39  FSENLYKIVTISLLIATVAALFFLRNVADTAALVSYETQ-AKSLEKIEFPQINWNSV 94


>tr|O22943|O22943_ARATH Expressed protein (Putative uncharacterized
           protein At2g41770) OS=Arabidopsis thaliana GN=At2g41770
           PE=2 SV=1
          Length = 771

 Score = 38.5 bits (88), Expect = 0.29
 Identities = 15/67 (22%), Positives = 37/67 (55%)
 Frame = +1

Query: 388 FTEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFRSVKRI 567
           F+E+  ++ +F+LL ++      + N ++T ++LC +SQ ++  + +  P I + S+  +
Sbjct: 44  FSENLSRIAVFSLLIVTIVAFFFLYNTTDTASLLCFQSQSTQFLQSLSRPQIKWNSIPVV 103

Query: 568 GPDTGVF 588
              T  +
Sbjct: 104 PDKTSPY 110


>tr|A7Q247|A7Q247_VITVI Chromosome chr13 scaffold_45, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028737001
           PE=4 SV=1
          Length = 753

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +1

Query: 391 TEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFRSV 558
           + +FPK+++ +LL ++  ++  VRN  +  +IL      SK  + I +P I+F S+
Sbjct: 30  SSNFPKIIVISLLIVTVAVVFFVRN--DAVSILYSGKSRSKSLKPIQFPKISFSSI 83


>tr|A5AD91|A5AD91_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029810 PE=4 SV=1
          Length = 690

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = +1

Query: 391 TEHFPKLVIFALLCLSAFILILVRNRSETGAILCIESQLSKEAEGIPYPSINFRSV 558
           + +FPK+++ +LL ++  ++  VRN  +  +IL      SK  + I +P I+F S+
Sbjct: 34  SSNFPKIIVISLLIVTVAVVFFVRN--DAVSILYSGKSRSKSLKPIQFPKISFSSI 87


>tr|A8FYV1|A8FYV1_SHESH Peptidase M17, leucyl aminopeptidase domain
           protein OS=Shewanella sediminis (strain HAW-EB3)
           GN=Ssed_3420 PE=4 SV=1
          Length = 511

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 257 FEGSSWTSIALIAGRFFNLCFDEMSLL*D 171
           FEGS W ++ ++A      CFDE+SLL D
Sbjct: 16  FEGSGWDALVVVAADITQTCFDEISLLAD 44


>tr|B6MTA6|B6MTA6_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_86431 PE=4 SV=1
          Length = 1386

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +2

Query: 98   SMRDPLCFRHSEHGDFLLLGSSFEGLKEDSSHQSTN*RIFPLSVQCWSKKSP 253
            S RD L ++ SE GD+ LL S    ++  SS  +T  R+ PLSV+C+S   P
Sbjct: 1325 SGRDGLTWQSSE-GDWHLLKSVVMKIRATSSLPTTEGRVGPLSVRCFSPPGP 1375


>tr|Q7M8Y1|Q7M8Y1_WOLSU TRANSPORTER, NADC FAMILY OS=Wolinella
           succinogenes GN=WS1321 PE=4 SV=1
          Length = 451

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 584 TPVSGPIRLTLLKFIDGYGMPSASFESWDSMHRMAPVSLRFL 459
           TP+  P  L LL F+D  GM    F +W +M  M PV++  L
Sbjct: 176 TPIGSPPNLILLGFLDKQGMDPIGFAAWVAM--MLPVTMMML 215