DK954162 |
Clone id |
TST39A01NGRL0019_L11 |
Library |
TST39 |
Length |
589 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_L11. 5' end sequence. |
Accession |
DK954162 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL348Contig1 |
Sequence |
CCAGTTGTGCGTGAGCGAAGCCTTCTTACAAGCGTCTCTCCCTGCGTCTCTCCCTGCCAT TGTGTGTGTGTGTGAGAGAGAGAGAGACCCATGAGATCTGCAAAACCATCCTAATTGCTA TCCGCACCGGCAAGATTAACCTTGGAGCTTGCCATTTCCATCGCCAAGTCGCTCCTTTTC CTACTCACATGGCTTCCTCTGTGGCAAACTCCTTTTCTGGCCTGAAACGGGCAGATGATG CTGTTTATACTGGATCAAAGCCCTGCAAATTCACCCAATGGGCAGCAGAATCATCTTCAA GGCGTAGCAGTAAGCAGAGAGTGCGCCTCTCAGGCGCTCGAAGCCAGGGTGCTGATGTTG CTGAATTGCAAACATCATCCTCGGGCCCTCTTCTAGTTCCTAGGCAGAGGTATTGTGAGG CAGCACACAAAACGATACGCAGGAAGACAAGAACTGTATCGGTGGGTGGTGTTACGATTG GAAGCGAGCATCCAATTCGTGTGCAAACCATGACAACGACTGACACAACCAATGTACAGG CTTCTGTGGAACAGGTCATGCGCATAGCCGACAAAGGTGCTGATCTCGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6MD85 |
Definition |
sp|Q6MD85|ISPG_PARUW 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) |
Align length |
62 |
Score (bit) |
68.6 |
E-value |
2.0e-11 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NZJ0 |
Definition |
tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
131 |
Score (bit) |
112.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954162|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_L11, 5' (589 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome ... 112 2e-23 tr|A5BBY6|A5BBY6_VITVI Putative uncharacterized protein OS=Vitis... 108 2e-22 tr|Q9FF59|Q9FF59_ARATH GcpE protein OS=Arabidopsis thaliana PE=4... 107 5e-22 tr|Q8GZR7|Q8GZR7_ARATH GcpE OS=Arabidopsis thaliana GN=At5g60600... 107 5e-22 tr|B3H725|B3H725_ARATH Uncharacterized protein At5g60600.3 OS=Ar... 107 5e-22 tr|Q8LPQ4|Q8LPQ4_ARATH AT5g60600/mup24_10 OS=Arabidopsis thalian... 107 6e-22 tr|A9ZN14|A9ZN14_HEVBR 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 105 2e-21 tr|Q8RXG8|Q8RXG8_ARATH GcpE protein (At5g60600) OS=Arabidopsis t... 104 3e-21 tr|A9CBE3|A9CBE3_GINBI (E)-4-hydroxy-3-methyl-but-2-enyl diphosp... 103 9e-21 tr|Q0PUV7|Q0PUV7_STERE (E)-4-hydroxy-3-methylbut-2-enyl diphosph... 100 6e-20 tr|A9RPA1|A9RPA1_PHYPA Predicted protein OS=Physcomitrella paten... 100 6e-20 tr|Q672R6|Q672R6_MAIZE Hydroxymethylbutenyl 4-diphosphate syntha... 99 1e-19 tr|B8A0F3|B8A0F3_MAIZE Putative uncharacterized protein OS=Zea m... 99 1e-19 tr|B6UDL5|B6UDL5_MAIZE Hydroxymethylbutenyl 4-diphosphate syntha... 99 1e-19 tr|Q6K8J4|Q6K8J4_ORYSJ Os02g0603800 protein OS=Oryza sativa subs... 97 9e-19 tr|B8AF20|B8AF20_ORYSI Putative uncharacterized protein OS=Oryza... 97 9e-19 tr|A3A8T7|A3A8T7_ORYSJ Putative uncharacterized protein OS=Oryza... 97 9e-19 tr|Q84XR5|Q84XR5_CATRO GCPE protein OS=Catharanthus roseus PE=2 ... 95 3e-18 tr|A9SJI1|A9SJI1_PHYPA 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 95 3e-18 tr|Q8GZR6|Q8GZR6_SOLLC GcpE OS=Solanum lycopersicum PE=2 SV=1 94 4e-18 tr|B3GEM5|B3GEM5_POPTR Putative chloroplast 4-hydroxy-3-methylbu... 90 8e-17 tr|A9SEV3|A9SEV3_PHYPA Predicted protein (Fragment) OS=Physcomit... 74 5e-12 tr|B8C7D5|B8C7D5_THAPS Gcpe-like protein OS=Thalassiosira pseudo... 64 5e-09 tr|B7FV10|B7FV10_PHATR 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphos... 64 5e-09 tr|B6DX96|B6DX96_PHATR Putative chloroplast 4-hydroxy-3-methylbu... 64 5e-09 tr|Q4VKB7|Q4VKB7_CHLRE Putative chloroplast 1-hydroxy-2-methyl-2... 63 1e-08 tr|A8ILN4|A8ILN4_CHLRE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphos... 63 1e-08 tr|A4S2B3|A4S2B3_OSTLU 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 62 2e-08 tr|Q012C2|Q012C2_OSTTA Putative chloroplast 1-hydroxy-2-methyl-2... 61 5e-08 tr|B1Q2Q6|B1Q2Q6_9ALVE 4-hydroxy-3-methylbut-2-en-1-yl diphospha... 58 3e-07
>tr|A7NZJ0|A7NZJ0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024531001 PE=4 SV=1 Length = 740
Score = 112 bits (279), Expect = 2e-23 Identities = 65/131 (49%), Positives = 83/131 (63%), Gaps = 1/131 (0%) Frame = +3
Query: 198 SVANSFSGLKRADDAVYTGSKPCKFTQWAAEXXXXXXXXXXXXXXGARSQGADVAELQTS 377 SV SFSGL+R D + + SK F + ++ + +D+AELQ S Sbjct: 5 SVPTSFSGLRRMDCNLGS-SKSVDFVR-VSDMQRITYGRRKVSVIRNSNPSSDIAELQAS 62
Query: 378 SSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXXXXXXNVQASVEQ 554 S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIR+Q +V A+VEQ Sbjct: 63 SEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVAATVEQ 122
Query: 555 VMRIADKGADL 587 VM+IADKGAD+ Sbjct: 123 VMKIADKGADI 133
>tr|A5BBY6|A5BBY6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005654 PE=4 SV=1 Length = 740
Score = 108 bits (271), Expect = 2e-22 Identities = 64/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Frame = +3
Query: 198 SVANSFSGLKRADDAVYTGSKPCKFTQWAAEXXXXXXXXXXXXXXGARSQGADVAELQTS 377 SV SFSGL+R D + + SK F + ++ + +D+AELQ S Sbjct: 5 SVPTSFSGLRRMDCNLGS-SKSVDFVR-VSDMQRITYGRRKVSVIRNSNPSSDIAELQAS 62
Query: 378 SSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXXXXXXNVQASVEQ 554 S G PLLVPRQ+YCE+ HKT+RRKT TV VG V +GSEHPIR+Q +V A+VEQ Sbjct: 63 SEGSPLLVPRQKYCESIHKTVRRKTCTVMVGNVALGSEHPIRIQTMTTTDTKDVAATVEQ 122
Query: 555 VMRIADKGADL 587 VM+IADKGAD+ Sbjct: 123 VMKIADKGADI 133
>tr|Q9FF59|Q9FF59_ARATH GcpE protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 716
Score = 107 bits (267), Expect = 5e-22 Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%) Frame = +3
Query: 342 SQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXX 518 +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIR+Q Sbjct: 26 NQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTT 85
Query: 519 XXXXNVQASVEQVMRIADKGADL 587 ++ +V++VMRIADKGAD+ Sbjct: 86 SDTKDITGTVDEVMRIADKGADI 108
>tr|Q8GZR7|Q8GZR7_ARATH GcpE OS=Arabidopsis thaliana GN=At5g60600 PE=2 SV=1 Length = 740
Score = 107 bits (267), Expect = 5e-22 Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%) Frame = +3
Query: 342 SQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXX 518 +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIR+Q Sbjct: 51 NQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTT 110
Query: 519 XXXXNVQASVEQVMRIADKGADL 587 ++ +V++VMRIADKGAD+ Sbjct: 111 SDTKDITGTVDEVMRIADKGADI 133
>tr|B3H725|B3H725_ARATH Uncharacterized protein At5g60600.3 OS=Arabidopsis thaliana GN=At5g60600 PE=4 SV=1 Length = 717
Score = 107 bits (267), Expect = 5e-22 Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%) Frame = +3
Query: 342 SQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXX 518 +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIR+Q Sbjct: 51 NQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTT 110
Query: 519 XXXXNVQASVEQVMRIADKGADL 587 ++ +V++VMRIADKGAD+ Sbjct: 111 SDTKDITGTVDEVMRIADKGADI 133
>tr|Q8LPQ4|Q8LPQ4_ARATH AT5g60600/mup24_10 OS=Arabidopsis thaliana PE=2 SV=1 Length = 741
Score = 107 bits (266), Expect = 6e-22 Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 1/83 (1%) Frame = +3
Query: 342 SQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXX 518 +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIR+Q Sbjct: 51 NQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGDVALGSEHPIRIQTMTT 110
Query: 519 XXXXNVQASVEQVMRIADKGADL 587 ++ +V++VMRIADKGAD+ Sbjct: 111 SDTKDITGTVDEVMRIADKGADI 133
>tr|A9ZN14|A9ZN14_HEVBR 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Hevea brasiliensis GN=HbHDS PE=2 SV=1 Length = 740
Score = 105 bits (261), Expect = 2e-21 Identities = 62/131 (47%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Frame = +3
Query: 198 SVANSFSGLKRADDAVYTGSKPCKFTQWAAEXXXXXXXXXXXXXXGARSQGADVAELQTS 377 +V SF+GLK D ++ G K F + + + G ++ ELQ + Sbjct: 5 AVPASFTGLKTRDSSLGFG-KSMDFVR-VCDLKRIKSGRKKISMIRNSNPGPEMVELQPA 62
Query: 378 SSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXXXXXXNVQASVEQ 554 S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPIRVQ +V +VEQ Sbjct: 63 SEGSPLLVPRQKYCESVHKTVRRKTRTVMVGNVALGSEHPIRVQTMTTSDTKDVAGTVEQ 122
Query: 555 VMRIADKGADL 587 VMRIAD+GADL Sbjct: 123 VMRIADQGADL 133
>tr|Q8RXG8|Q8RXG8_ARATH GcpE protein (At5g60600) OS=Arabidopsis thaliana GN=At5g60600 PE=2 SV=1 Length = 741
Score = 104 bits (260), Expect = 3e-21 Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 1/83 (1%) Frame = +3
Query: 342 SQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXX 518 +QG+D+AELQ +S G PLLVPRQ+YCE+ HKT+RRKTRTV VG V +GSEHPI +Q Sbjct: 51 NQGSDLAELQPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIGIQTMTT 110
Query: 519 XXXXNVQASVEQVMRIADKGADL 587 ++ +V++VMRIADKGAD+ Sbjct: 111 SDTKDITGTVDEVMRIADKGADI 133
>tr|A9CBE3|A9CBE3_GINBI (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate synthase OS=Ginkgo biloba PE=2 SV=1 Length = 741
Score = 103 bits (256), Expect = 9e-21 Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 1/84 (1%) Frame = +3
Query: 339 RSQGADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXX 515 R+ +D+AE+Q +S G PLLVPRQ+YCE+ +KT+RR+TRT+ G V +GSEHPIR+Q Sbjct: 51 RNSSSDIAEMQRASEGSPLLVPRQKYCESIYKTVRRRTRTMMAGNVALGSEHPIRIQTMT 110
Query: 516 XXXXXNVQASVEQVMRIADKGADL 587 +V A+VEQVMRIAD+GADL Sbjct: 111 TTDTKDVSATVEQVMRIADRGADL 134
>tr|Q0PUV7|Q0PUV7_STERE (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase OS=Stevia rebaudiana GN=HDS PE=2 SV=2 Length = 740
Score = 100 bits (249), Expect = 6e-20 Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%) Frame = +3
Query: 348 GADVAELQTSSSG-PLLVPRQRYCEAAHKTIRRKTRTVSVGGVTIGSEHPIRVQXXXXXX 524 G+D+AE + +S G PLLVP Q+YCE+ HKT+RRKTRTV VG V +GS+HPIR+Q Sbjct: 53 GSDIAEFKPASEGSPLLVPVQKYCESTHKTLRRKTRTVMVGDVALGSDHPIRIQTMTTSD 112
Query: 525 XXNVQASVEQVMRIADKGADL 587 +V A+VEQVM+IAD+GADL Sbjct: 113 TKDVAATVEQVMQIADRGADL 133
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