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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954179
Clone id TST39A01NGRL0019_M04
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_M04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTTATCTCCCTCTCTCTGTCTCGTCTGCTCGCCTGCTTGCCATGTCCATTCGAGAAGC
TGTAGACTTTCGGCTGCACGAGCTCCAACAACTAGTATCAGAGCACTTGGTGGTGTTCTT
GGCAACCTGAGGTCGCCGTAGCAACTGTTGTTGGCGGACATACCTCTTAAAACGCTCTCT
GTTGGTGACGCAAGAAAACCCCACACGGTGTTGCTAGGTGAGGAGGCGAGAAGAAGGTCA
AGAAGGAGAAAGGAAGCTCAGATAGAGACGCTTGAGATCAGTTGGAACAAGGCGGTGGCT
AGTGGCTCTCAGCGCATACCAGTTGGACGTAGTAAGCGGTGGTGGTAGGACAACCCACAA
GACGGGGTGCACAGATCGACAATCGCGCTGTAGCAGTCGGTTAACAGCACCAGCGAACGA
CAGTATTCAATAATTGGACTCACTGGCGATGCCTAACCTCTAACACGCCTTCAGAGGATC
GGTCTCACTTGCAAACTCCGGCCAAGAAGTTCAACCCGTTGTTGGCAAGGGGGCGTGAAT
ATTACGAGGGAATCTCAGGTGATCAATCTCGGCACAGAGCAGTGCTGACGGCGCAAGGAA
ATCTCGACGGTGTTGGGC
■■Homology search results ■■ -
sp_hit_id Q674R7
Definition sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapiens
Align length 29
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_M04, 5'
         (618 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapie...    32   2.0  
sp|P69526|TMPS9_RAT Transmembrane protease, serine 9 OS=Rattus n...    30   9.9  
sp|P69525|TMPS9_MOUSE Transmembrane protease, serine 9 OS=Mus mu...    30   9.9  
sp|Q9Z175|LOXL3_MOUSE Lysyl oxidase homolog 3 OS=Mus musculus GN...    30   9.9  

>sp|Q674R7|ATG9B_HUMAN Autophagy-related protein 9B OS=Homo sapiens
           GN=ATG9B PE=2 SV=1
          Length = 924

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 191 ASPTESVLRGMSANNSCYGDLRLPRTPPS 105
           A P  SVL+G  A+ SC+  L +P TPP+
Sbjct: 71  AGPPCSVLQGTGASQSCHSALPIPATPPT 99


>sp|P69526|TMPS9_RAT Transmembrane protease, serine 9 OS=Rattus
           norvegicus GN=Tmprss9 PE=3 SV=1
          Length = 1061

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 113 PPSALILVVGARAAESLQLLEWTWQAGEQTRQRE 12
           PP AL  +VG  AA    L EW WQ     R+RE
Sbjct: 823 PPGALTRIVGGSAAS---LGEWPWQVSLWLRRRE 853


>sp|P69525|TMPS9_MOUSE Transmembrane protease, serine 9 OS=Mus
           musculus GN=Tmprss9 PE=2 SV=1
          Length = 1065

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 113 PPSALILVVGARAAESLQLLEWTWQAGEQTRQRE 12
           PP AL  +VG  AA    L EW WQ     R+RE
Sbjct: 827 PPGALTRIVGGSAAS---LGEWPWQVSLWLRRRE 857


>sp|Q9Z175|LOXL3_MOUSE Lysyl oxidase homolog 3 OS=Mus musculus
           GN=Loxl3 PE=2 SV=1
          Length = 754

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 444 WRCLTSNTPSEDRSHLQTPAKKFNPLLARGREYYEGISGDQSRHRAVLTAQGNLDG 611
           WRC + N  +ED SH Q    + N L   G E    +SG +SR+   +  Q  + G
Sbjct: 385 WRCPSKNITAEDCSHSQDAGVRCN-LPYTGVETKIRLSGGRSRYEGRVEVQIGIPG 439
tr_hit_id A5D2J1
Definition tr|A5D2J1|A5D2J1_PELTS Methylmalonyl-CoA decarboxylase, gamma subunit OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
Align length 112
Score (bit) 35.4
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_M04, 5'
         (618 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5D2J1|A5D2J1_PELTS Methylmalonyl-CoA decarboxylase, gamma su...    35   2.7  

>tr|A5D2J1|A5D2J1_PELTS Methylmalonyl-CoA decarboxylase, gamma
           subunit OS=Pelotomaculum thermopropionicum (strain DSM
           13744 / JCM 10971 / SI) GN=MmcJ PE=4 SV=1
          Length = 146

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
 Frame = +1

Query: 1   ALSPSLCLVCSPACHVHSRSCRLSAARAPTTSIRALGGVLGNLRSP*QLLLADIPLKTLS 180
           A++P      +PA    + + + +AA APT    A GG  G L +P    + DI +K   
Sbjct: 38  AVAPPAAPAPAPAAAAPAAAPKPAAAAAPTPKPPADGGSGGTLCAPMPGTILDIRVK--- 94

Query: 181 VGDARKPHTVLLGEEA---XXXXXXXKEAQIETLEISWNKAVASGSQRIPVG 327
           VGDA K   VL+  EA          K   ++ +++S  +AV  G   + +G
Sbjct: 95  VGDAVKVGDVLVILEAMKMENELAAEKAGTVKEIKVSKGQAVNGGDPLVVIG 146