DK954210
Clone id TST39A01NGRL0019_N11
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_N11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTCGATGTTTTCACGCTTGGCGACAAGGAATCAAGCTCGCCTCCCCTCCTCGCTTCAGCG
AACAATACCTTTGATTGCGCCGCTGTCTGCTGCATTCACCATTCACTCAAAGGATTCCTC
AAGTTTTCCATGGCTGAATCCCTTGTCTTGTCTTTCTCGTCAATCGGGATCTCAAAACGG
GGTACTCCTTTGCAGCTTTCACAACAGGTTTTGAATTACCACCAAGCTTTCTGGGGCAGG
CCTGTAAAGAAGCAAGAGCTCACGCTTTCAGTACCTAATTGCCAAGGCCATCATATTTGC
GCAGCAGTTCAGACAGCTGACTACACTGAACTCGATGCTATTTCAAAATTTAGTGAGATA
GTTCCTGACACAGTTATTTTTGATGATTTTGAAAGGCTTGCTCCTACTGCAGCTACAGTC
AGCTCATCACTTCTTCTTGGGATCACAAGCGTACCAAAAACAAAGTTTAATAGTGCTATT
GAGACAGCATTAGCGTACAATGAGTGCTACCTGAAGGGATACAATTGAAAGCCGACTTTC
TTGCTTTACTGATAAGGCCCCTTGTGAATGTAGGGAGTATTTT
■■Homology search results ■■ -
sp_hit_id A4XTM7
Definition sp|A4XTM7|TAL_PSEMY Transaldolase OS=Pseudomonas mendocina (strain ymp)
Align length 44
Score (bit) 34.3
E-value 0.47
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954210|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_N11, 5'
(583 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4XTM7|TAL_PSEMY Transaldolase OS=Pseudomonas mendocina (stra... 34 0.47
sp|P03226|MCP_EBV Major capsid protein OS=Epstein-Barr virus (st... 32 1.8
sp|Q4ZV64|TAL_PSEU2 Transaldolase OS=Pseudomonas syringae pv. sy... 32 2.3
sp|Q884H4|TAL_PSESM Transaldolase OS=Pseudomonas syringae pv. to... 32 2.3
sp|Q48KH5|TAL_PSE14 Transaldolase OS=Pseudomonas syringae pv. ph... 32 2.3
sp|Q83QM8|TALA_SHIFL Transaldolase A OS=Shigella flexneri GN=tal... 31 3.9
sp|P0A867|TALA_ECOLI Transaldolase A OS=Escherichia coli (strain... 30 6.7
sp|P0A868|TALA_ECOL6 Transaldolase A OS=Escherichia coli O6 GN=t... 30 6.7
sp|P0A869|TALA_ECO57 Transaldolase A OS=Escherichia coli O157:H7... 30 6.7
sp|Q3YZ89|TAL2_SHISS Transaldolase 2 OS=Shigella sonnei (strain ... 30 6.7
sp|Q8ZN83|TALA_SALTY Transaldolase A OS=Salmonella typhimurium G... 30 8.8
sp|Q8Z4T0|TALA_SALTI Transaldolase A OS=Salmonella typhi GN=talA... 30 8.8
sp|Q5PCU4|TAL2_SALPA Transaldolase 2 OS=Salmonella paratyphi A G... 30 8.8
sp|Q57LN7|TAL2_SALCH Transaldolase 2 OS=Salmonella choleraesuis ... 30 8.8

>sp|A4XTM7|TAL_PSEMY Transaldolase OS=Pseudomonas mendocina (strain
ymp) GN=tal PE=3 SV=1
Length = 308

Score = 34.3 bits (77), Expect = 0.47
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVP 456
++L+ + +F+ +V DT D RL P AT + SLLL S+P
Sbjct: 3 SKLEQLKQFTTVVADTGDLDAIARLKPVDATTNPSLLLKAASLP 46


>sp|P03226|MCP_EBV Major capsid protein OS=Epstein-Barr virus
(strain B95-8) GN=BcLF1 PE=3 SV=1
Length = 1381

Score = 32.3 bits (72), Expect = 1.8
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +1

Query: 235 GRPVKKQELTLSVPNCQGHHICAAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAA 414
GR KQ + V NC HHI ++ + +L+ + +P+T + ++
Sbjct: 107 GRRPSKQRTFIVVKNCHKHHISTEMELS-MLDLEILHS----IPETPV--EYAEYVGAVK 159

Query: 415 TVSSSLLLGITSVPKTKFNSAIETALAY 498
TV+S+L G+ ++ + N+ + L +
Sbjct: 160 TVASALQFGVDALERGLINTVLSVKLRH 187


>sp|Q4ZV64|TAL_PSEU2 Transaldolase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=tal PE=3 SV=1
Length = 313

Score = 32.0 bits (71), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITS 450
++LD + KF+ +V DT F + L P AT + SLLL S
Sbjct: 3 SKLDQLKKFTTVVADTGDFGAIKSLEPEDATTNPSLLLKAAS 44


>sp|Q884H4|TAL_PSESM Transaldolase OS=Pseudomonas syringae pv.
tomato GN=tal PE=3 SV=1
Length = 309

Score = 32.0 bits (71), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITS 450
++LD + KF+ +V DT F + L P AT + SLLL S
Sbjct: 3 SKLDQLKKFTTVVADTGDFGAIKSLKPQDATTNPSLLLKAAS 44


>sp|Q48KH5|TAL_PSE14 Transaldolase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=tal PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 2.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITS 450
++LD + KF+ +V DT F + L P AT + SLLL S
Sbjct: 3 SKLDQLKKFTTVVADTGDFGAIKSLEPEDATTNPSLLLKAAS 44


>sp|Q83QM8|TALA_SHIFL Transaldolase A OS=Shigella flexneri GN=talA
PE=3 SV=1
Length = 316

Score = 31.2 bits (69), Expect = 3.9
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1

Query: 328 ELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
ELD I +F+ +V D+ + P AT + SLLL + +++ I+ A+A+ +
Sbjct: 3 ELDGIKQFTTVVADSCDIESIRHYHPQDATANPSLLLKAAGL--SQYEHLIDDAIAWGK 59


>sp|P0A867|TALA_ECOLI Transaldolase A OS=Escherichia coli (strain
K12) GN=talA PE=1 SV=1
Length = 316

Score = 30.4 bits (67), Expect = 6.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1

Query: 328 ELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
ELD I +F+ +V D+ + P AT + SLLL + +++ I+ A+A+ +
Sbjct: 3 ELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL--SQYEHLIDDAIAWGK 59


>sp|P0A868|TALA_ECOL6 Transaldolase A OS=Escherichia coli O6 GN=talA
PE=3 SV=1
Length = 316

Score = 30.4 bits (67), Expect = 6.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1

Query: 328 ELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
ELD I +F+ +V D+ + P AT + SLLL + +++ I+ A+A+ +
Sbjct: 3 ELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL--SQYEHLIDDAIAWGK 59


>sp|P0A869|TALA_ECO57 Transaldolase A OS=Escherichia coli O157:H7
GN=talA PE=3 SV=1
Length = 316

Score = 30.4 bits (67), Expect = 6.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1

Query: 328 ELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
ELD I +F+ +V D+ + P AT + SLLL + +++ I+ A+A+ +
Sbjct: 3 ELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL--SQYEHLIDDAIAWGK 59


>sp|Q3YZ89|TAL2_SHISS Transaldolase 2 OS=Shigella sonnei (strain
Ss046) GN=tal2 PE=3 SV=1
Length = 316

Score = 30.4 bits (67), Expect = 6.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1

Query: 328 ELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
ELD I +F+ +V D+ + P AT + SLLL + +++ I+ A+A+ +
Sbjct: 3 ELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL--SQYEHLIDDAIAWGK 59


tr_hit_id A9TQS8
Definition tr|A9TQS8|A9TQS8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 112.0
E-value 2.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954210|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0019_N11, 5'
(583 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TQS8|A9TQS8_PHYPA Predicted protein OS=Physcomitrella paten... 112 2e-23
tr|B4FD03|B4FD03_MAIZE Putative uncharacterized protein OS=Zea m... 100 1e-19
tr|Q84ZL6|Q84ZL6_ORYSJ Os08g0154300 protein OS=Oryza sativa subs... 97 9e-19
tr|B7ERR5|B7ERR5_ORYSJ cDNA clone:J033038K01, full insert sequen... 97 9e-19
tr|A2YRB6|A2YRB6_ORYSI Putative uncharacterized protein OS=Oryza... 97 9e-19
tr|A7QVD8|A7QVD8_VITVI Chromosome chr2 scaffold_187, whole genom... 92 2e-17
tr|Q8LGN9|Q8LGN9_ARALY Transaldolase-like protein (Fragment) OS=... 86 1e-16
tr|Q941R1|Q941R1_SOLLC Transaldolase ToTAL2 OS=Solanum lycopersi... 89 2e-16
tr|Q7XAS4|Q7XAS4_GOSHI Transaldolase OS=Gossypium hirsutum PE=2 ... 89 2e-16
tr|Q9FWX0|Q9FWX0_ARATH T28K15.4 protein (At1g12230) (Expressed p... 85 3e-16
tr|Q8L9B8|Q8L9B8_ARATH Transaldolase ToTAL2 OS=Arabidopsis thali... 85 3e-16
tr|Q8LGP6|Q8LGP6_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8LGP5|Q8LGP5_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L4P1|Q8L4P1_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L4P0|Q8L4P0_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L4B7|Q8L4B7_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L485|Q8L485_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L456|Q8L456_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|Q8L3R9|Q8L3R9_ARATH Transaldolase-like protein (Fragment) OS=... 85 3e-16
tr|A9P023|A9P023_PICSI Putative uncharacterized protein OS=Picea... 87 5e-16
tr|A7Q673|A7Q673_VITVI Chromosome undetermined scaffold_55, whol... 68 4e-10
tr|Q075L3|Q075L3_PROWI Plastid transaldolase 1 (Fragment) OS=Pro... 41 0.056
tr|Q0S0V1|Q0S0V1_RHOSR Probable enoyl-CoA hydratase OS=Rhodococc... 37 0.62
tr|Q3APF7|Q3APF7_CHLCH Glycosyl transferase OS=Chlorobium chloro... 36 1.4
tr|B2EJS1|B2EJS1_9BACT Transaldolase OS=bacterium Ellin514 GN=Cf... 35 2.4
tr|B1VED9|B1VED9_CORU7 Putative drug exporter of the RND superfa... 35 4.0
tr|Q2NG98|Q2NG98_METST Member of asn/thr-rich large protein fami... 34 5.2
tr|B8KXM1|B8KXM1_9GAMM Transaldolase OS=gamma proteobacterium NO... 34 6.9
tr|A0Z810|A0Z810_9GAMM Transaldolase OS=marine gamma proteobacte... 34 6.9

>tr|A9TQS8|A9TQS8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_110503 PE=4 SV=1
Length = 408

Score = 112 bits (279), Expect = 2e-23
Identities = 55/78 (70%), Positives = 67/78 (85%)
Frame = +1

Query: 283 QGHHICAAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKT 462
+G + A+V TA+ TELDAI K+SE+VPDTVIFDDFER PTAATVSSSLLLGITSVPK
Sbjct: 60 KGLSLRASVSTAEGTELDAIRKYSEVVPDTVIFDDFERFPPTAATVSSSLLLGITSVPKG 119

Query: 463 KFNSAIETALAYNECYLK 516
+N AI++ALAYN+CY++
Sbjct: 120 SYNGAIDSALAYNKCYVE 137


>tr|B4FD03|B4FD03_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 394

Score = 99.8 bits (247), Expect = 1e-19
Identities = 55/94 (58%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Frame = +1

Query: 238 RPVKKQELTLSVPNCQGHHICAAVQTADY----TELDAISKFSEIVPDTVIFDDFERLAP 405
RP K +L P+ T+ TELDA++ FSEIVPDTV+FDDFER AP
Sbjct: 26 RPPKPATFSLRRPHLAARAAAGNAPTSPVREVVTELDAVAGFSEIVPDTVVFDDFERFAP 85

Query: 406 TAATVSSSLLLGITSVPKTKFNSAIETALAYNEC 507
TAATVSSSLLLGIT +P TKF SAI+TALA EC
Sbjct: 86 TAATVSSSLLLGITGLPDTKFKSAIDTALADGEC 119


>tr|Q84ZL6|Q84ZL6_ORYSJ Os08g0154300 protein OS=Oryza sativa subsp.
japonica GN=OJ1066_B03.121-1 PE=3 SV=1
Length = 399

Score = 96.7 bits (239), Expect = 9e-19
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
TELDA++ FSEIVPDTV+FDDFE+ APTAATVSSSLLLGI +P TKF SAI+TALA E
Sbjct: 64 TELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADGE 123

Query: 505 C 507
C
Sbjct: 124 C 124


>tr|B7ERR5|B7ERR5_ORYSJ cDNA clone:J033038K01, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 232

Score = 96.7 bits (239), Expect = 9e-19
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
TELDA++ FSEIVPDTV+FDDFE+ APTAATVSSSLLLGI +P TKF SAI+TALA E
Sbjct: 64 TELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADGE 123

Query: 505 C 507
C
Sbjct: 124 C 124


>tr|A2YRB6|A2YRB6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27846 PE=3 SV=1
Length = 399

Score = 96.7 bits (239), Expect = 9e-19
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
TELDA++ FSEIVPDTV+FDDFE+ APTAATVSSSLLLGI +P TKF SAI+TALA E
Sbjct: 64 TELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADGE 123

Query: 505 C 507
C
Sbjct: 124 C 124


>tr|A7QVD8|A7QVD8_VITVI Chromosome chr2 scaffold_187, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00007295001
PE=3 SV=1
Length = 265

Score = 92.4 bits (228), Expect = 2e-17
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +1

Query: 325 TELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAIETALAYNE 504
TE DA+S SEIVPDTVIFDDFER PTAATVSSSLLLGI S+P T F SA+ETALA +
Sbjct: 50 TEFDAVSDLSEIVPDTVIFDDFERFPPTAATVSSSLLLGICSLPDTIFRSAVETALADSV 109

Query: 505 CY 510
CY
Sbjct: 110 CY 111


>tr|Q8LGN9|Q8LGN9_ARALY Transaldolase-like protein (Fragment)
OS=Arabidopsis lyrata PE=3 SV=1
Length = 375

Score = 85.9 bits (211), Expect(2) = 1e-16
Identities = 41/69 (59%), Positives = 54/69 (78%)
Frame = +1

Query: 301 AAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAI 480
++++ + EL+A+S FSEIVPDTV+FDDFER PTAATVSSSLLLGI +P T F +A+
Sbjct: 61 SSLEAGENNELNAVSAFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICGLPDTIFRNAV 120

Query: 481 ETALAYNEC 507
+ ALA + C
Sbjct: 121 DMALADSSC 129



Score = 24.3 bits (51), Expect(2) = 1e-16
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2

Query: 518 DTIESRLSCFTDKA 559
+T ESRLSCF +KA
Sbjct: 133 ETTESRLSCFFNKA 146


>tr|Q941R1|Q941R1_SOLLC Transaldolase ToTAL2 OS=Solanum lycopersicum
PE=2 SV=1
Length = 397

Score = 89.0 bits (219), Expect = 2e-16
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +1

Query: 301 AAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAI 480
+++ T TELDA++ SEIVPDTVIFDDFE+ PTA T SSSLLLGI +P TKF SA+
Sbjct: 54 SSLDTGLSTELDAVANHSEIVPDTVIFDDFEKFPPTAGTASSSLLLGICGLPDTKFKSAV 113

Query: 481 ETALAYNECY 510
+ AL+ +ECY
Sbjct: 114 DRALSDSECY 123


>tr|Q7XAS4|Q7XAS4_GOSHI Transaldolase OS=Gossypium hirsutum PE=2
SV=1
Length = 396

Score = 89.0 bits (219), Expect = 2e-16
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = +1

Query: 301 AAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAI 480
+++ T TELDA+S FSEIVPDTVIFDDFE+ PTAATVSSSLLLGI S+P T F +A+
Sbjct: 52 SSLDTGLRTELDAVSTFSEIVPDTVIFDDFEKFPPTAATVSSSLLLGILSLPDTIFRNAV 111

Query: 481 ETALAYNEC 507
+ ALA + C
Sbjct: 112 DLALADSTC 120


>tr|Q9FWX0|Q9FWX0_ARATH T28K15.4 protein (At1g12230) (Expressed
protein) OS=Arabidopsis thaliana GN=At1g12230 PE=2 SV=1
Length = 405

Score = 84.7 bits (208), Expect(2) = 3e-16
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +1

Query: 301 AAVQTADYTELDAISKFSEIVPDTVIFDDFERLAPTAATVSSSLLLGITSVPKTKFNSAI 480
++++ + EL+A+S FSEIVPDTV+FDDFER PTAATVSS+LLLGI +P T F +A+
Sbjct: 61 SSLEAGENNELNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAV 120

Query: 481 ETALAYNEC 507
+ ALA + C
Sbjct: 121 DMALADSSC 129



Score = 24.3 bits (51), Expect(2) = 3e-16
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2

Query: 518 DTIESRLSCFTDKA 559
+T ESRLSCF +KA
Sbjct: 133 ETTESRLSCFFNKA 146