DK954216 |
Clone id |
TST39A01NGRL0019_N17 |
Library |
TST39 |
Length |
589 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0019_N17. 5' end sequence. |
Accession |
DK954216 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL77Contig1 |
Sequence |
ATCACAAAAGCTTGTAAGTCTAGAGGTTCTGACCTCCGTGTGCACTTTAAGAACACCCGC GAGGCAGCACAAGCAATCAAGAAACTTGACCTTGCAAAGGCCAAAAGGTATTTGGAAGAT GTGGTGGCCCACAAGCAGGCTATCCCTTTCCGCCGTTTCTGTGGTGGCGTCGGTAGAACA GCCCAAGCAAAGGCCCGCCATTCTAATGGGCAGGGTAGGTGGCCTGTGAAGTCCGCCCAG TTCCTTCTAGGTTTGCTGAAAAATGCTGAGAGCAATGCAGAGACAAAGGGGCTGGATGTA GATACACTGTATGTTTCTCACATTCAGGTCAACAAGGCTCAGAAGCAGAGGAGACGTACC TACCGTGCCCACGGTCGCATCAATCCGTACATGTCTTCCCCTTGCCACATTGAGTTAATT CTTGCTGAGAAGGAAGCCCCTGTGAAGAAAGAGGCGGAGTCTTCAGGAAAGCGGCCTCAG AAAGGTCCAGCACGCCTCCGCAGTGGCGCCTCCTCTTAGAAATTTCATGTTATCAGCAGC AGTTGACAAGTTGGTTCTGTGCACAAGATGGCAGGACTGCTGCCCATTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48557 |
Definition |
sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays |
Align length |
140 |
Score (bit) |
249.0 |
E-value |
9.0e-66 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SN83 |
Definition |
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
169 |
Score (bit) |
270.0 |
E-value |
4.0e-71 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954216|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0019_N17, 5' (589 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella paten... 270 4e-71 tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomit... 267 3e-70 tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomit... 267 3e-70 tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 267 4e-70 tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella paten... 264 3e-69 tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea... 264 3e-69 tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea... 262 1e-68 tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea... 261 3e-68 tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genom... 253 4e-66 tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Popul... 252 1e-65 tr|B6T595|B6T595_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 252 1e-65 tr|A9PJV5|A9PJV5_POPJC Putative uncharacterized protein OS=Popul... 252 1e-65 tr|A9PA96|A9PA96_POPTR Putative uncharacterized protein OS=Popul... 252 1e-65 tr|A7QP85|A7QP85_VITVI Chromosome chr1 scaffold_136, whole genom... 252 1e-65 tr|A5B412|A5B412_VITVI Putative uncharacterized protein OS=Vitis... 252 1e-65 tr|Q6K1W6|Q6K1W6_ORYSJ Os09g0258600 protein OS=Oryza sativa subs... 251 3e-65 tr|B3TM07|B3TM07_ELAGV Ribosomal protein L17 OS=Elaeis guineensi... 251 3e-65 tr|A2YZ23|A2YZ23_ORYSI Putative uncharacterized protein OS=Oryza... 251 3e-65 tr|Q947H2|Q947H2_PETHY Ribosomal protein OS=Petunia hybrida GN=P... 250 4e-65 tr|B3TM08|B3TM08_ELAGV Ribosomal protein OS=Elaeis guineensis va... 250 4e-65 tr|B4FHE4|B4FHE4_MAIZE Putative uncharacterized protein OS=Zea m... 250 5e-65 tr|A9PBU5|A9PBU5_POPTR Putative uncharacterized protein OS=Popul... 250 5e-65 tr|B4FNT0|B4FNT0_MAIZE Putative uncharacterized protein OS=Zea m... 249 8e-65 tr|A9PCW9|A9PCW9_POPTR Putative uncharacterized protein OS=Popul... 249 1e-64 tr|B6UDY2|B6UDY2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 248 1e-64 tr|B6SIM9|B6SIM9_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 248 1e-64 tr|A7QP86|A7QP86_VITVI Chromosome chr1 scaffold_136, whole genom... 248 1e-64 tr|Q0WRE5|Q0WRE5_ARATH Ribosomal protein L17-like protein OS=Ara... 248 2e-64 tr|B6T1L4|B6T1L4_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 248 2e-64 tr|B6SJH2|B6SJH2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 248 2e-64
>tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165821 PE=3 SV=1 Length = 186
Score = 270 bits (690), Expect = 4e-71 Identities = 138/169 (81%), Positives = 144/169 (85%), Gaps = 1/169 (0%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQA+PFRRFCGGVGRTA Sbjct: 12 TKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAVPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTY Sbjct: 72 QAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL-XXXXXXXXXXXXSSGKRPQKGPARLRSG 507 RAHGRINPYMSSPCHIELIL S K +K RLRSG Sbjct: 132 RAHGRINPYMSSPCHIELILSEKEAPVAKAVEVSEPKTRRKDQGRLRSG 180
>tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_132604 PE=3 SV=1 Length = 229
Score = 267 bits (683), Expect = 3e-70 Identities = 131/140 (93%), Positives = 135/140 (96%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTA Sbjct: 11 TKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTA 70
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTY Sbjct: 71 QAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTY 130
Query: 364 RAHGRINPYMSSPCHIELIL 423 RAHGRINPYMSSPCHIELIL Sbjct: 131 RAHGRINPYMSSPCHIELIL 150
>tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_122013 PE=3 SV=1 Length = 174
Score = 267 bits (683), Expect = 3e-70 Identities = 131/140 (93%), Positives = 135/140 (96%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTY Sbjct: 72 QAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL 423 RAHGRINPYMSSPCHIELIL Sbjct: 132 RAHGRINPYMSSPCHIELIL 151
>tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152415 PE=3 SV=1 Length = 190
Score = 267 bits (682), Expect = 4e-70 Identities = 130/140 (92%), Positives = 135/140 (96%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTY Sbjct: 72 QAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL 423 RAHGRINPYMSSPCHIEL+L Sbjct: 132 RAHGRINPYMSSPCHIELVL 151
>tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177216 PE=3 SV=1 Length = 187
Score = 264 bits (674), Expect = 3e-69 Identities = 135/170 (79%), Positives = 144/170 (84%), Gaps = 2/170 (1%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAKARHSNGQGRWPVKSA FLL LLKNAESNAE KGLDVD+L VSHIQVN+AQKQRRRTY Sbjct: 72 QAKARHSNGQGRWPVKSATFLLDLLKNAESNAEVKGLDVDSLVVSHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL--XXXXXXXXXXXXSSGKRPQKGPARLRSG 507 RAHGRINPYMSSPCHIELIL S+ + ++ RLRSG Sbjct: 132 RAHGRINPYMSSPCHIELILSEKEAPVKKEVEEVSAPRSNKRDQGRLRSG 181
>tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 264 bits (674), Expect = 3e-69 Identities = 133/171 (77%), Positives = 147/171 (85%), Gaps = 2/171 (1%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TK+ K+RGSDLRVHFKNTRE AQA+KKL L KAKRYLEDV+AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKSAKARGSDLRVHFKNTRETAQAVKKLSLTKAKRYLEDVIAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAK+R+SNGQGRWPVKSA+FLLGLLKNAESNAE KGLDVDTLY+SHIQVN+AQKQRRRTY Sbjct: 72 QAKSRNSNGQGRWPVKSAEFLLGLLKNAESNAEVKGLDVDTLYISHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELILXXXXXXXXXXXXS--SGKRPQKGPARLRSGA 510 RAHGRINPYMSSPCHIELIL + + ++P+K LRSGA Sbjct: 132 RAHGRINPYMSSPCHIELILSEKEAPVKKEAETQIAPRKPRKAQT-LRSGA 181
>tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 262 bits (669), Expect = 1e-68 Identities = 126/140 (90%), Positives = 133/140 (95%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TK+CK+RGSDLRVHFKNTRE AQA+KKL LAKAK YLEDV+AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKSCKARGSDLRVHFKNTRETAQAVKKLPLAKAKAYLEDVLAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAK+RHSNGQGRWPVKS QFLL LLKNAESNAE KGLDVD LY+SHIQVN+AQKQRRRTY Sbjct: 72 QAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL 423 RAHGRINPYMSSPCHIELIL Sbjct: 132 RAHGRINPYMSSPCHIELIL 151
>tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 261 bits (666), Expect = 3e-68 Identities = 125/140 (89%), Positives = 133/140 (95%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TK+CK+RGSDLRVHFKNTRE AQA+KKL +AKAK YLEDV+AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKSCKARGSDLRVHFKNTRETAQAVKKLPVAKAKAYLEDVLAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAK+RHSNGQGRWPVKS QFLL LLKNAESNAE KGLDVD LY+SHIQVN+AQKQRRRTY Sbjct: 72 QAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELIL 423 RAHGRINPYMSSPCHIELIL Sbjct: 132 RAHGRINPYMSSPCHIELIL 151
>tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017930001 PE=3 SV=1 Length = 216
Score = 253 bits (647), Expect = 4e-66 Identities = 129/170 (75%), Positives = 140/170 (82%), Gaps = 1/170 (0%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TK+CK+RGSDLRVHFKNTRE A AI+KL L KAKRYLEDV+AHKQAIPF+RFC GVGRTA Sbjct: 45 TKSCKARGSDLRVHFKNTRETAHAIRKLRLTKAKRYLEDVLAHKQAIPFQRFCRGVGRTA 104
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAK RHSNGQGRWPVKSA+F+L LLKNAESNA+ KGLDVD+LYVSHIQVN+AQKQRRRTY Sbjct: 105 QAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYVSHIQVNQAQKQRRRTY 164
Query: 364 RAHGRINPYMSSPCHIELILXXXXXXXXXXXXSS-GKRPQKGPARLRSGA 510 RAHGRINPYMSSPCHIELIL + R K LRSGA Sbjct: 165 RAHGRINPYMSSPCHIELILSEKEEPVQKEPDTQLAPRKTKKTQALRSGA 214
>tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 181
Score = 252 bits (644), Expect = 1e-65 Identities = 127/169 (75%), Positives = 139/169 (82%) Frame = +1
Query: 4 TKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTA 183 TK+CK+RGSDLRVHFKNTRE A +I+K+ L KAKRYLE V+AHKQAIPFRRFCGGVGRTA Sbjct: 12 TKSCKARGSDLRVHFKNTRETAFSIRKMPLDKAKRYLEGVLAHKQAIPFRRFCGGVGRTA 71
Query: 184 QAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTY 363 QAK RHSNGQGRWP KSA+F+L LLKNAESNAE KGLDVD LY+SHIQVN+AQKQRRRTY Sbjct: 72 QAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 131
Query: 364 RAHGRINPYMSSPCHIELILXXXXXXXXXXXXSSGKRPQKGPARLRSGA 510 RAHGRINPYMSSPCHIELIL + P+K LRSGA Sbjct: 132 RAHGRINPYMSSPCHIELILSEKEEPVKKEADTQ-IAPRKPKGALRSGA 179
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