DK954285 |
Clone id |
TST39A01NGRL0020_A16 |
Library |
TST39 |
Length |
564 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A16. 5' end sequence. |
Accession |
DK954285 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1941Contig1 |
Sequence |
GAAGAAGGGAGATAAAAGCGAAGGGGTTGAGTTGGGCAATTCAGAAATCAAACGTTGCAA GGAGCTTAAGACAAAGGACCAAAAACATGATGTGTCCCAACCTGCTTGCAGTGGAGGTTC CCCTGACAATTCAGCTGATTTCATGCCTGTAATCAAACCAAAGGATGTAATACTTGCAAT TGGGCAGCAACAGTTTTGGAAAGCACGCAAAACACTTCTTCGGCAACAGCGGATCTTTTC AGATCAAGTGTTTCAACTACACAAACTCATCATGATTCAGCACCTACTGGCTGAAACCCC AGGGACATTAATTGATGAAGCAGTGCACTTTGAGACAGTTGGGGAATGTGAAGCTCCACC TCGTCTGACCAAAAGGACAATGAATTCTGGTAATTGTGCTCGTAATGATGGAAACTCAAA GAAGGGAAGTAAAAGTCAGTCAGCTGATGTAGAAGGTTCCCCAGCTGTCAGCAAAGATGT CAACAAGGAGGTGAAGGGTTTTGTCGCCAGACTCAATTCATGGCGGGATAAGTTCATGGG GGGTATCCTAAGCTTTGGGCAGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O82804 |
Definition |
sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana |
Align length |
78 |
Score (bit) |
68.2 |
E-value |
3.0e-11 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SK89 |
Definition |
tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
68 |
Score (bit) |
73.9 |
E-value |
5.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954285|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_A16, 5' (564 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella paten... 74 5e-12 tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1 70 6e-11 tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome ... 70 1e-10 tr|Q50K74|Q50K74_LEMGI ELF3 homologue OS=Lemna gibba GN=LgELF3 H... 69 2e-10 tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza... 66 1e-09 tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subs... 65 3e-09 tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza... 65 3e-09 tr|A5AX69|A5AX69_VITVI Putative uncharacterized protein OS=Vitis... 63 1e-08 tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata GN=L... 62 2e-08 tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome ... 61 5e-08 tr|Q6UEI3|Q6UEI3_MESCR Early flowering 3 OS=Mesembryanthemum cry... 60 8e-08 tr|Q5Q0C8|Q5Q0C8_ARATH Putative uncharacterized protein OS=Arabi... 59 2e-07 tr|Q5BPQ6|Q5BPQ6_ARATH Putative uncharacterized protein OS=Arabi... 59 2e-07 tr|A9SK26|A9SK26_PHYPA Predicted protein OS=Physcomitrella paten... 57 9e-07 tr|A9RIP0|A9RIP0_PHYPA Predicted protein OS=Physcomitrella paten... 54 8e-06 tr|A5Y6J3|A5Y6J3_PEA EARLY FLOWERING 3 (Fragment) OS=Pisum sativ... 48 3e-04 tr|A5BVL6|A5BVL6_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04 tr|A2ZUH2|A2ZUH2_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002 tr|Q9LU26|Q9LU26_ARATH Dbj|BAA83571.1 OS=Arabidopsis thaliana PE... 44 0.006 tr|B7Y0K5|B7Y0K5_RUMHA Putative uncharacterized protein OS=Blaut... 39 0.25 tr|B6SWY8|B6SWY8_MAIZE ASK20 OS=Zea mays PE=2 SV=1 38 0.43 tr|A5DGP6|A5DGP6_PICGU Putative uncharacterized protein OS=Pichi... 35 2.2 tr|Q8HXJ0|Q8HXJ0_MACFA Putative uncharacterized protein OS=Macac... 35 2.8 tr|B6TXE4|B6TXE4_MAIZE Transferase family protein OS=Zea mays PE... 35 2.9 tr|B8A0B4|B8A0B4_MAIZE Putative uncharacterized protein OS=Zea m... 35 3.7 tr|Q7T1C9|Q7T1C9_DANRE Period 2 circadian clock protein OS=Danio... 34 6.3 tr|B3DJN7|B3DJN7_DANRE Per2 protein OS=Danio rerio GN=per2 PE=2 ... 34 6.3 tr|Q4U5H6|Q4U5H6_9BACT Membrane bound nitrate reductase (Fragmen... 34 6.3 tr|Q8N1X9|Q8N1X9_HUMAN cDNA FLJ37295 fis, clone BRAMY2015311, mo... 34 6.3 tr|Q14CB0|Q14CB0_HUMAN Tryptophan hydroxylase 2 OS=Homo sapiens ... 34 6.3
>tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165364 PE=4 SV=1 Length = 1796
Score = 73.9 bits (180), Expect = 5e-12 Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 5/68 (7%) Frame = +2
Query: 113 GGSPDNSADFMPVIKP-----KDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMI 277 GGS + + + + P +DV+ A GQQ+FWK++KT++RQQ++FS QVF+LH+LI + Sbjct: 385 GGSAETESSMLENLPPGSICFRDVVDAFGQQEFWKSQKTIMRQQKLFSRQVFELHRLIEV 444
Query: 278 QHLLAETP 301 QHLLA++P Sbjct: 445 QHLLAKSP 452
Score = 61.2 bits (147), Expect = 4e-08 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAE 295 ++ +DV+ GQQ FWK +K ++RQQRIFS Q+F LH+++ +QHLLA+ Sbjct: 1357 VQLRDVVNIFGQQGFWKTQKVIIRQQRIFSKQLFDLHRIMEVQHLLAK 1404
>tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1 Length = 769
Score = 70.5 bits (171), Expect = 6e-11 Identities = 35/77 (45%), Positives = 51/77 (66%) Frame = +2
Query: 86 HDVSQPACSGGSPDNSADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHK 265 HDV + S S ++ D I P DV+ AIG + FWKAR+ ++ QQR+F+ QVF+LH+ Sbjct: 359 HDVQRDDSSDSSVESLPDLE--ISPDDVVGAIGPKHFWKARRAIVNQQRVFAVQVFELHR 416
Query: 266 LIMIQHLLAETPGTLID 316 LI +Q L+A +P LI+ Sbjct: 417 LIKVQKLIAASPHLLIE 433
>tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032149001 PE=4 SV=1 Length = 497
Score = 69.7 bits (169), Expect = 1e-10 Identities = 29/59 (49%), Positives = 45/59 (76%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVH 328 I P DV+ IGQ+ FWKAR+ ++ QQR+F+ QVF+LH+LI +Q L+A +P ++DE+ + Sbjct: 233 ITPDDVVGIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQRLIAGSPHLMVDESAY 291
>tr|Q50K74|Q50K74_LEMGI ELF3 homologue OS=Lemna gibba GN=LgELF3 H1 PE=2 SV=1 Length = 470
Score = 68.9 bits (167), Expect = 2e-10 Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%) Frame = +2
Query: 8 GDKSEGVELGNSEIKRCKELKTKDQKHDVSQPACSGGS-------------------PDN 130 GD SE V +G + DQ HD SG S D Sbjct: 156 GDPSEDVVVGTDT--------SSDQDHDDGNLRSSGSSGSTDKIPSAEDGATDCSIGDDA 207
Query: 131 SADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTL 310 + M P +++ IG + FWKAR+ ++ QQR+F+ QVF+LH+L+ +Q LLAE+P L Sbjct: 208 FGEGMDACNPDNLVGLIGLKHFWKARRAMVNQQRVFALQVFELHRLMNVQKLLAESPHLL 267
Query: 311 IDEAVHFETVGECEAP 358 +++A F G AP Sbjct: 268 LEDASSFH--GSSNAP 281
>tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02465 PE=4 SV=1 Length = 745
Score = 66.2 bits (160), Expect = 1e-09 Identities = 27/55 (49%), Positives = 42/55 (76%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316 I P +++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+ Sbjct: 376 ISPDEIVGAIGAKHFWKARRAIINQQRVFAAQVFELHKLVKVQKLIAASPHVLIE 430
>tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subsp. japonica GN=P0535G04.25 PE=4 SV=1 Length = 760
Score = 64.7 bits (156), Expect = 3e-09 Identities = 27/55 (49%), Positives = 41/55 (74%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316 I P ++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+ Sbjct: 393 ISPDKIVGAIGTKHFWKARRAIMNQQRVFAVQVFELHKLVKVQKLIAASPHVLIE 447
>tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21588 PE=4 SV=1 Length = 760
Score = 64.7 bits (156), Expect = 3e-09 Identities = 27/55 (49%), Positives = 41/55 (74%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316 I P ++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+ Sbjct: 393 ISPDKIVGAIGTKHFWKARRAIMNQQRVFAVQVFELHKLVKVQKLIAASPHVLIE 447
>tr|A5AX69|A5AX69_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023490 PE=4 SV=1 Length = 1255
Score = 62.8 bits (151), Expect = 1e-08 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 12/123 (9%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVHF 331 I P DV+ IG + FWK R ++ QQR+F+ QVF+LH+LI +Q L+A +P +D ++ Sbjct: 864 ISPDDVVGIIGHKHFWKTRNAIVNQQRVFAVQVFELHRLIKVQRLIAGSPEGQLDNNLYL 923
Query: 332 ETVGE------CEAP----PRLTKRTMNSGNCARNDGNSKKGSKSQSA--DVEGSPAVSK 475 E+P P + + + S +G+ K+ S ++ A D G+P + Sbjct: 924 AEPASSTKKLPSESPTKKLPSESVQQLPSQIADPKNGSQKQDSNNEGAVKDAVGNPPFAS 983
Query: 476 DVN 484 V+ Sbjct: 984 PVD 986
>tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata GN=LpELF3 H1 PE=2 SV=1 Length = 492
Score = 62.0 bits (149), Expect = 2e-08 Identities = 31/79 (39%), Positives = 50/79 (63%) Frame = +2
Query: 128 NSADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGT 307 +S + P +++ IG + FWKAR+ ++ QQR+ + QVF+LH+L+ IQ LLAE+P Sbjct: 223 DSREAADAYNPDNLVGLIGLKHFWKARRAIISQQRVLALQVFELHRLMNIQKLLAESPQL 282
Query: 308 LIDEAVHFETVGECEAPPR 364 L+++A F G AP + Sbjct: 283 LLEDASSFH--GSPAAPSK 299
>tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034223001 PE=4 SV=1 Length = 614
Score = 60.8 bits (146), Expect = 5e-08 Identities = 26/59 (44%), Positives = 40/59 (67%) Frame = +2
Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVH 328 I P DV+ IG + FWK R ++ QQR+F+ QVF+LH+LI +Q L+A +P +D ++ Sbjct: 311 ISPDDVVGIIGHKHFWKTRNAIVNQQRVFAVQVFELHRLIKVQRLIAGSPEGQLDNNLY 369
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