DK954285
Clone id TST39A01NGRL0020_A16
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GAAGAAGGGAGATAAAAGCGAAGGGGTTGAGTTGGGCAATTCAGAAATCAAACGTTGCAA
GGAGCTTAAGACAAAGGACCAAAAACATGATGTGTCCCAACCTGCTTGCAGTGGAGGTTC
CCCTGACAATTCAGCTGATTTCATGCCTGTAATCAAACCAAAGGATGTAATACTTGCAAT
TGGGCAGCAACAGTTTTGGAAAGCACGCAAAACACTTCTTCGGCAACAGCGGATCTTTTC
AGATCAAGTGTTTCAACTACACAAACTCATCATGATTCAGCACCTACTGGCTGAAACCCC
AGGGACATTAATTGATGAAGCAGTGCACTTTGAGACAGTTGGGGAATGTGAAGCTCCACC
TCGTCTGACCAAAAGGACAATGAATTCTGGTAATTGTGCTCGTAATGATGGAAACTCAAA
GAAGGGAAGTAAAAGTCAGTCAGCTGATGTAGAAGGTTCCCCAGCTGTCAGCAAAGATGT
CAACAAGGAGGTGAAGGGTTTTGTCGCCAGACTCAATTCATGGCGGGATAAGTTCATGGG
GGGTATCCTAAGCTTTGGGCAGTG
■■Homology search results ■■ -
sp_hit_id O82804
Definition sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana
Align length 78
Score (bit) 68.2
E-value 3.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954285|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A16, 5'
(564 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis th... 68 3e-11
sp|Q2HZ26|TPH2_MACMU Tryptophan 5-hydroxylase 2 OS=Macaca mulatt... 35 0.25
sp|Q8IWU9|TPH2_HUMAN Tryptophan 5-hydroxylase 2 OS=Homo sapiens ... 34 0.57
sp|A5FC71|UXUA_FLAJ1 Mannonate dehydratase OS=Flavobacterium joh... 32 2.2
sp|Q7N8V9|APAH_PHOLL Bis(5'-nucleosyl)-tetraphosphatase, symmetr... 31 3.7
sp|Q39YL8|MURC_GEOMG UDP-N-acetylmuramate--L-alanine ligase OS=G... 31 4.8
sp|A0AIV3|SYA_LISW6 Alanyl-tRNA synthetase OS=Listeria welshimer... 30 6.3
sp|P10180|CUT_DROME Homeobox protein cut OS=Drosophila melanogas... 30 6.3

>sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis
thaliana GN=ELF3 PE=1 SV=1
Length = 695

Score = 68.2 bits (165), Expect = 3e-11
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +2

Query: 92 VSQPACSGGSPDNSADFMPVI--KPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHK 265
+++ A S D+ D + I P DV+ +GQ++FW+ARK + QQR+F+ Q+F+LH+
Sbjct: 294 INEEASDDVSDDSMVDSISSIDVSPDDVVGILGQKRFWRARKAIANQQRVFAVQLFELHR 353

Query: 266 LIMIQHLLAETPGTLIDE 319
LI +Q L+A +P L+DE
Sbjct: 354 LIKVQKLIAASPDLLLDE 371


>sp|Q2HZ26|TPH2_MACMU Tryptophan 5-hydroxylase 2 OS=Macaca mulatta
GN=TPH2 PE=2 SV=1
Length = 490

Score = 35.0 bits (79), Expect = 0.25
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2

Query: 377 TMNSGNCARNDGNSKKG-SKSQSADVEGSPAVSKDVNKEVKGFVARLNSWRDK 532
T+N N +ND KG SK+++A G AV + EV G V L +++K
Sbjct: 35 TLNKANSGKNDDKGNKGSSKNETATESGKTAVVFSLKNEVGGLVKALRLFQEK 87


>sp|Q8IWU9|TPH2_HUMAN Tryptophan 5-hydroxylase 2 OS=Homo sapiens
GN=TPH2 PE=1 SV=1
Length = 490

Score = 33.9 bits (76), Expect = 0.57
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2

Query: 365 LTKRTMNSGNCARNDGNSKKG-SKSQSADVEGSPAVSKDVNKEVKGFVARLNSWRDK 532
L T+N N +ND KG SK ++A G AV + EV G V L +++K
Sbjct: 31 LGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFSLKNEVGGLVKALRLFQEK 87


>sp|A5FC71|UXUA_FLAJ1 Mannonate dehydratase OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=uxuA PE=3 SV=1
Length = 394

Score = 32.0 bits (71), Expect = 2.2
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +2

Query: 287 LAETPGTLIDEAVHFETVGECEAPPRLTKRTMNSGNCARNDGNSKKGSKSQSADVEGSPA 466
+A+T T I A+H GE + + KR + DG+ KKG+ + V S
Sbjct: 19 IAQTGATGIVTALHHIPNGEVWSIDEIIKRKVE---IEHQDGDPKKGASGLTWSVVESIP 75

Query: 467 VSKDVNKEVKGFVARLNSWRD 529
V +D+ K+ ++ + ++++
Sbjct: 76 VHEDIKKQTGNYIQYIENYKE 96


>sp|Q7N8V9|APAH_PHOLL Bis(5'-nucleosyl)-tetraphosphatase,
symmetrical OS=Photorhabdus luminescens subsp. laumondii
GN=apaH PE=3 SV=1
Length = 275

Score = 31.2 bits (69), Expect = 3.7
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1

Query: 240 EKIRCCRRSVLRAFQNCCCPIASITSFGLITGMKSAELSGEPPLQAGWD--TSCFWSFVL 67
E + C V F + C P+ + +G + S ELSG L+ + T + F
Sbjct: 130 ETAKMCASEVETMFNSSCYPLFLNSMYGDMPNNWSPELSGLARLRFSTNALTRMRYCFPN 189

Query: 66 SSLQRLISELPNSTPSLLSPFF 1
L L + P + P+ L P+F
Sbjct: 190 GQLDMLCKDKPENAPAPLKPWF 211


>sp|Q39YL8|MURC_GEOMG UDP-N-acetylmuramate--L-alanine ligase
OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=murC PE=3 SV=1
Length = 461

Score = 30.8 bits (68), Expect = 4.8
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2

Query: 50 KRCKELKTKDQKHDVSQPACSGGSPDNSADFMPVIKPKDVILAIGQQQFWKARKTLLRQ 226
+R E K + DV+ A PD+ + +++P D++L +G W+ + LLR+
Sbjct: 400 ERLAENIRKHGQRDVTYIADREALPDH---LLQIVRPGDIVLTLGAGNIWQTGEALLRK 455


>sp|A0AIV3|SYA_LISW6 Alanyl-tRNA synthetase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=alaS PE=3 SV=1
Length = 879

Score = 30.4 bits (67), Expect = 6.3
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +2

Query: 350 EAPPRLTKRTMNSGNCAR-NDGNSKKGSKSQSADVEGSP-------AVSKDVN-KEVKGF 502
EAP ++ + + R N+ K + + SAD+ SP ++K VN K++
Sbjct: 729 EAPQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQL 788

Query: 503 VARLNSWRDKFMGGILSFG 559
+++W+DK +GGIL G
Sbjct: 789 RQFVDNWKDKKIGGILVLG 807


>sp|P10180|CUT_DROME Homeobox protein cut OS=Drosophila melanogaster
GN=ct PE=1 SV=1
Length = 2175

Score = 30.4 bits (67), Expect = 6.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2

Query: 368 TKRTMNSGNCARNDGNSKKGSKSQSADVEGSPAV---SKDVNKEVKGFVARLNSWR 526
T T N+ N + GNS+K K + + G PAV +KD KE+K + L R
Sbjct: 400 TSNTNNNNNNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKD--KEIKALLDELQRLR 453


tr_hit_id A9SK89
Definition tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 68
Score (bit) 73.9
E-value 5.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954285|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A16, 5'
(564 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella paten... 74 5e-12
tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1 70 6e-11
tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome ... 70 1e-10
tr|Q50K74|Q50K74_LEMGI ELF3 homologue OS=Lemna gibba GN=LgELF3 H... 69 2e-10
tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza... 66 1e-09
tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subs... 65 3e-09
tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza... 65 3e-09
tr|A5AX69|A5AX69_VITVI Putative uncharacterized protein OS=Vitis... 63 1e-08
tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata GN=L... 62 2e-08
tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome ... 61 5e-08
tr|Q6UEI3|Q6UEI3_MESCR Early flowering 3 OS=Mesembryanthemum cry... 60 8e-08
tr|Q5Q0C8|Q5Q0C8_ARATH Putative uncharacterized protein OS=Arabi... 59 2e-07
tr|Q5BPQ6|Q5BPQ6_ARATH Putative uncharacterized protein OS=Arabi... 59 2e-07
tr|A9SK26|A9SK26_PHYPA Predicted protein OS=Physcomitrella paten... 57 9e-07
tr|A9RIP0|A9RIP0_PHYPA Predicted protein OS=Physcomitrella paten... 54 8e-06
tr|A5Y6J3|A5Y6J3_PEA EARLY FLOWERING 3 (Fragment) OS=Pisum sativ... 48 3e-04
tr|A5BVL6|A5BVL6_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04
tr|A2ZUH2|A2ZUH2_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002
tr|Q9LU26|Q9LU26_ARATH Dbj|BAA83571.1 OS=Arabidopsis thaliana PE... 44 0.006
tr|B7Y0K5|B7Y0K5_RUMHA Putative uncharacterized protein OS=Blaut... 39 0.25
tr|B6SWY8|B6SWY8_MAIZE ASK20 OS=Zea mays PE=2 SV=1 38 0.43
tr|A5DGP6|A5DGP6_PICGU Putative uncharacterized protein OS=Pichi... 35 2.2
tr|Q8HXJ0|Q8HXJ0_MACFA Putative uncharacterized protein OS=Macac... 35 2.8
tr|B6TXE4|B6TXE4_MAIZE Transferase family protein OS=Zea mays PE... 35 2.9
tr|B8A0B4|B8A0B4_MAIZE Putative uncharacterized protein OS=Zea m... 35 3.7
tr|Q7T1C9|Q7T1C9_DANRE Period 2 circadian clock protein OS=Danio... 34 6.3
tr|B3DJN7|B3DJN7_DANRE Per2 protein OS=Danio rerio GN=per2 PE=2 ... 34 6.3
tr|Q4U5H6|Q4U5H6_9BACT Membrane bound nitrate reductase (Fragmen... 34 6.3
tr|Q8N1X9|Q8N1X9_HUMAN cDNA FLJ37295 fis, clone BRAMY2015311, mo... 34 6.3
tr|Q14CB0|Q14CB0_HUMAN Tryptophan hydroxylase 2 OS=Homo sapiens ... 34 6.3

>tr|A9SK89|A9SK89_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165364 PE=4 SV=1
Length = 1796

Score = 73.9 bits (180), Expect = 5e-12
Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 5/68 (7%)
Frame = +2

Query: 113 GGSPDNSADFMPVIKP-----KDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMI 277
GGS + + + + P +DV+ A GQQ+FWK++KT++RQQ++FS QVF+LH+LI +
Sbjct: 385 GGSAETESSMLENLPPGSICFRDVVDAFGQQEFWKSQKTIMRQQKLFSRQVFELHRLIEV 444

Query: 278 QHLLAETP 301
QHLLA++P
Sbjct: 445 QHLLAKSP 452



Score = 61.2 bits (147), Expect = 4e-08
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAE 295
++ +DV+ GQQ FWK +K ++RQQRIFS Q+F LH+++ +QHLLA+
Sbjct: 1357 VQLRDVVNIFGQQGFWKTQKVIIRQQRIFSKQLFDLHRIMEVQHLLAK 1404


>tr|A7YJG7|A7YJG7_WHEAT ELF3 protein OS=Triticum aestivum PE=2 SV=1
Length = 769

Score = 70.5 bits (171), Expect = 6e-11
Identities = 35/77 (45%), Positives = 51/77 (66%)
Frame = +2

Query: 86 HDVSQPACSGGSPDNSADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHK 265
HDV + S S ++ D I P DV+ AIG + FWKAR+ ++ QQR+F+ QVF+LH+
Sbjct: 359 HDVQRDDSSDSSVESLPDLE--ISPDDVVGAIGPKHFWKARRAIVNQQRVFAVQVFELHR 416

Query: 266 LIMIQHLLAETPGTLID 316
LI +Q L+A +P LI+
Sbjct: 417 LIKVQKLIAASPHLLIE 433


>tr|A7P4H0|A7P4H0_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032149001
PE=4 SV=1
Length = 497

Score = 69.7 bits (169), Expect = 1e-10
Identities = 29/59 (49%), Positives = 45/59 (76%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVH 328
I P DV+ IGQ+ FWKAR+ ++ QQR+F+ QVF+LH+LI +Q L+A +P ++DE+ +
Sbjct: 233 ITPDDVVGIIGQKHFWKARRAIVNQQRVFAVQVFELHRLIKVQRLIAGSPHLMVDESAY 291


>tr|Q50K74|Q50K74_LEMGI ELF3 homologue OS=Lemna gibba GN=LgELF3 H1
PE=2 SV=1
Length = 470

Score = 68.9 bits (167), Expect = 2e-10
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Frame = +2

Query: 8 GDKSEGVELGNSEIKRCKELKTKDQKHDVSQPACSGGS-------------------PDN 130
GD SE V +G + DQ HD SG S D
Sbjct: 156 GDPSEDVVVGTDT--------SSDQDHDDGNLRSSGSSGSTDKIPSAEDGATDCSIGDDA 207

Query: 131 SADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTL 310
+ M P +++ IG + FWKAR+ ++ QQR+F+ QVF+LH+L+ +Q LLAE+P L
Sbjct: 208 FGEGMDACNPDNLVGLIGLKHFWKARRAMVNQQRVFALQVFELHRLMNVQKLLAESPHLL 267

Query: 311 IDEAVHFETVGECEAP 358
+++A F G AP
Sbjct: 268 LEDASSFH--GSSNAP 281


>tr|B8AAB0|B8AAB0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02465 PE=4 SV=1
Length = 745

Score = 66.2 bits (160), Expect = 1e-09
Identities = 27/55 (49%), Positives = 42/55 (76%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316
I P +++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+
Sbjct: 376 ISPDEIVGAIGAKHFWKARRAIINQQRVFAAQVFELHKLVKVQKLIAASPHVLIE 430


>tr|Q9SNQ6|Q9SNQ6_ORYSJ Os06g0142600 protein OS=Oryza sativa subsp.
japonica GN=P0535G04.25 PE=4 SV=1
Length = 760

Score = 64.7 bits (156), Expect = 3e-09
Identities = 27/55 (49%), Positives = 41/55 (74%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316
I P ++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+
Sbjct: 393 ISPDKIVGAIGTKHFWKARRAIMNQQRVFAVQVFELHKLVKVQKLIAASPHVLIE 447


>tr|A2Y950|A2Y950_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21588 PE=4 SV=1
Length = 760

Score = 64.7 bits (156), Expect = 3e-09
Identities = 27/55 (49%), Positives = 41/55 (74%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLID 316
I P ++ AIG + FWKAR+ ++ QQR+F+ QVF+LHKL+ +Q L+A +P LI+
Sbjct: 393 ISPDKIVGAIGTKHFWKARRAIMNQQRVFAVQVFELHKLVKVQKLIAASPHVLIE 447


>tr|A5AX69|A5AX69_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_023490 PE=4 SV=1
Length = 1255

Score = 62.8 bits (151), Expect = 1e-08
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVHF 331
I P DV+ IG + FWK R ++ QQR+F+ QVF+LH+LI +Q L+A +P +D ++
Sbjct: 864 ISPDDVVGIIGHKHFWKTRNAIVNQQRVFAVQVFELHRLIKVQRLIAGSPEGQLDNNLYL 923

Query: 332 ETVGE------CEAP----PRLTKRTMNSGNCARNDGNSKKGSKSQSA--DVEGSPAVSK 475
E+P P + + + S +G+ K+ S ++ A D G+P +
Sbjct: 924 AEPASSTKKLPSESPTKKLPSESVQQLPSQIADPKNGSQKQDSNNEGAVKDAVGNPPFAS 983

Query: 476 DVN 484
V+
Sbjct: 984 PVD 986


>tr|Q50K78|Q50K78_9ARAE ELF3 homologue OS=Lemna paucicostata
GN=LpELF3 H1 PE=2 SV=1
Length = 492

Score = 62.0 bits (149), Expect = 2e-08
Identities = 31/79 (39%), Positives = 50/79 (63%)
Frame = +2

Query: 128 NSADFMPVIKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGT 307
+S + P +++ IG + FWKAR+ ++ QQR+ + QVF+LH+L+ IQ LLAE+P
Sbjct: 223 DSREAADAYNPDNLVGLIGLKHFWKARRAIISQQRVLALQVFELHRLMNIQKLLAESPQL 282

Query: 308 LIDEAVHFETVGECEAPPR 364
L+++A F G AP +
Sbjct: 283 LLEDASSFH--GSPAAPSK 299


>tr|A7P6W0|A7P6W0_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034223001
PE=4 SV=1
Length = 614

Score = 60.8 bits (146), Expect = 5e-08
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2

Query: 152 IKPKDVILAIGQQQFWKARKTLLRQQRIFSDQVFQLHKLIMIQHLLAETPGTLIDEAVH 328
I P DV+ IG + FWK R ++ QQR+F+ QVF+LH+LI +Q L+A +P +D ++
Sbjct: 311 ISPDDVVGIIGHKHFWKTRNAIVNQQRVFAVQVFELHRLIKVQRLIAGSPEGQLDNNLY 369