DK954290 |
Clone id |
TST39A01NGRL0020_A21 |
Library |
TST39 |
Length |
629 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A21. 5' end sequence. |
Accession |
DK954290 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL418Contig1 |
Sequence |
GCTTCTGCTAAGTAGCAGAAGATAGTATCTGGAATCCAGAGCAAGACATGGATGCTCTGG CCATGGCAGGCGCCTCTTCGTCTACCACGTCCTCATCCCTTATCGCCAGAGCCTTCCACT CACAGCGCCTTTCCAGGCTTCCCTCGCAGCGCGGCTATGTCTTCCTTCCCTTATCTTCCT GCCGAGCAAGGCCCATCTCAATCTCTGTCTCAGCATGGCAACATCGTCCCTCCTACACTT TCAGAGCATCAGCTCAGGCGGACGCCAAGGTTGTAAATGAGCAACAGGATGCCGAAGCTA GCGAGTCAGAGTATGAAAGCACAGATGAAGAAAGTGATGGGTCTGCAGCAGAAGAAGCTT CCTTACCTAGTGTGGAGGCAATGCTGAAGAAATACAGGGAGGCATTGTCGAATAATGATG AAGCAGCTCTGGAAGAGCTTGATGTCAAGTTTCAGCAGCTGGAGAAGGAAAAGAACATGT ACGCAAAGCAGGTCTCTACCCTCAACGACGAGGTTCTTTCACTCAAAGAGCGACTTCTGC GGTTGAATGCAGATTTTGACAATTTTAGGAAAAGGTCTGAGAGAGACAGGATCGCCGTTG GCACCAATGTGAAAGGGGATGTTGTGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8XIT0 |
Definition |
sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens |
Align length |
88 |
Score (bit) |
50.4 |
E-value |
7.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954290|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_A21, 5' (629 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens GN=... 50 7e-06 sp|Q0TNS6|GRPE_CLOP1 Protein grpE OS=Clostridium perfringens (st... 49 2e-05 sp|Q892Q9|GRPE_CLOTE Protein grpE OS=Clostridium tetani GN=grpE ... 48 4e-05 sp|Q0SRE2|GRPE_CLOPS Protein grpE OS=Clostridium perfringens (st... 48 5e-05 sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair ra... 45 2e-04 sp|Q7V9C9|GRPE_PROMM Protein grpE OS=Prochlorococcus marinus (st... 45 2e-04 sp|P30726|GRPE_CLOAB Protein grpE OS=Clostridium acetobutylicum ... 45 2e-04 sp|A6LRN3|GRPE_CLOB8 Protein grpE OS=Clostridium beijerinckii (s... 43 0.002 sp|Q661A2|GRPE_BORGA Protein grpE OS=Borrelia garinii GN=grpE PE... 41 0.004 sp|Q7UA77|GRPE_SYNPX Protein grpE OS=Synechococcus sp. (strain W... 41 0.006 sp|A2BNE2|GRPE_PROMS Protein grpE OS=Prochlorococcus marinus (st... 41 0.006 sp|Q59978|GRPE_SYNY3 Protein grpE OS=Synechocystis sp. (strain P... 40 0.008 sp|A4IR32|GRPE_GEOTN Protein grpE OS=Geobacillus thermodenitrifi... 40 0.008 sp|Q6G1E4|GRPE_BARQU Protein grpE OS=Bartonella quintana GN=grpE... 40 0.008 sp|A3PA63|GRPE_PROM0 Protein grpE OS=Prochlorococcus marinus (st... 40 0.010 sp|A4IX27|GRPE_FRATW Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|P48204|GRPE_FRATU Protein grpE OS=Francisella tularensis GN=g... 40 0.010 sp|Q5NFG6|GRPE_FRATT Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|Q0BLK5|GRPE_FRATO Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|A0Q7F1|GRPE_FRATN Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|Q2A329|GRPE_FRATH Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|A7NCM8|GRPE_FRATF Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|Q14GW8|GRPE_FRAT1 Protein grpE OS=Francisella tularensis subs... 40 0.010 sp|Q0SMY9|GRPE_BORAP Protein grpE OS=Borrelia afzelii (strain PK... 40 0.010 sp|Q46I46|GRPE_PROMT Protein grpE OS=Prochlorococcus marinus (st... 40 0.013 sp|Q31DG8|GRPE_PROM9 Protein grpE OS=Prochlorococcus marinus (st... 40 0.013 sp|Q9KD73|GRPE_BACHD Protein grpE OS=Bacillus halodurans GN=grpE... 40 0.013 sp|A8G203|GRPE_PROM2 Protein grpE OS=Prochlorococcus marinus (st... 39 0.017 sp|A2BTV4|GRPE_PROM5 Protein grpE OS=Prochlorococcus marinus (st... 39 0.022 sp|Q7V3Q4|GRPE_PROMP Protein grpE OS=Prochlorococcus marinus sub... 39 0.029
>sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens GN=grpE PE=3 SV=1 Length = 208
Score = 50.4 bits (119), Expect = 7e-06 Identities = 25/88 (28%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Frame = +3
Query: 366 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 542 P+++ +++ E + +++ EEL Q L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----QALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 543 LNADFDNFRKRSERDRIAVGTNVKGDVV 626 ++A+++N+RKR+++++ + T+ DV+ Sbjct: 84 ISAEYENYRKRTDKEKERIYTDACEDVL 111
>sp|Q0TNS6|GRPE_CLOP1 Protein grpE OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=grpE PE=3 SV=1 Length = 208
Score = 48.9 bits (115), Expect = 2e-05 Identities = 24/88 (27%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Frame = +3
Query: 366 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 542 P+++ +++ E + +++ EEL + L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----KALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 543 LNADFDNFRKRSERDRIAVGTNVKGDVV 626 ++A+++N+RKR+++++ + T+ DV+ Sbjct: 84 ISAEYENYRKRTDKEKERIYTDACEDVL 111
>sp|Q892Q9|GRPE_CLOTE Protein grpE OS=Clostridium tetani GN=grpE PE=3 SV=1 Length = 200
Score = 48.1 bits (113), Expect = 4e-05 Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 13/93 (13%) Frame = +3
Query: 387 KKYREALSNNDEAALEELDV----KFQQLEK--EKNMYAKQVSTL-------NDEVLSLK 527 KK + + +E LEE +V +F++L+K E+N + +STL N+E+ +LK Sbjct: 11 KKVEDLEMDLNEEELEESEVNEDKEFEELDKSEEENEVEELISTLKDENEKLNNEMEALK 70
Query: 528 ERLLRLNADFDNFRKRSERDRIAVGTNVKGDVV 626 +RLLR ++DN+RKR++R++ + + DV+ Sbjct: 71 DRLLRTTGEYDNYRKRTDREKEGLYASACEDVL 103
>sp|Q0SRE2|GRPE_CLOPS Protein grpE OS=Clostridium perfringens (strain SM101 / Type A) GN=grpE PE=3 SV=1 Length = 208
Score = 47.8 bits (112), Expect = 5e-05 Identities = 23/88 (26%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Frame = +3
Query: 366 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 542 P+++ +++ E + +++ EEL + L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----KALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 543 LNADFDNFRKRSERDRIAVGTNVKGDVV 626 ++++++N+RKR+++++ + T+ DV+ Sbjct: 84 ISSEYENYRKRTDKEKERIYTDACEDVL 111
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase OS=Aquifex aeolicus GN=rad50 PE=3 SV=1 Length = 978
Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 8/84 (9%) Frame = +3
Query: 363 LPSVEAMLKKYREALSNNDEAA--------LEELDVKFQQLEKEKNMYAKQVSTLNDEVL 518 L ++E ++K RE L + + A +EE+D K +L+ KN K+++ L DE+ Sbjct: 253 LENLEKEVEKLREKLEFSRKVAPYVPIAKRIEEIDKKLTELKVRKNKLTKELAVLKDELS 312
Query: 519 SLKERLLRLNADFDNFRKRSERDR 590 +E L R+ A+ + F++ ER++ Sbjct: 313 FAQEELNRIEAEKEKFKEEKEREK 336
>sp|Q7V9C9|GRPE_PROMM Protein grpE OS=Prochlorococcus marinus (strain MIT 9313) GN=grpE PE=3 SV=1 Length = 237
Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/64 (39%), Positives = 38/64 (59%) Frame = +3
Query: 399 EALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRS 578 E S+ A L + + + QQLE+E S+L +E +L+ + +R+ ADFDNFRKR Sbjct: 33 EGQSSAQSAPLADNEARLQQLEQEH-------SSLREEHETLRSQYMRIAADFDNFRKRQ 85
Query: 579 ERDR 590 RD+ Sbjct: 86 SRDQ 89
>sp|P30726|GRPE_CLOAB Protein grpE OS=Clostridium acetobutylicum GN=grpE PE=3 SV=1 Length = 200
Score = 45.4 bits (106), Expect = 2e-04 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 4/81 (4%) Frame = +3
Query: 399 EALSNNDEAALEE----LDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNF 566 E N++E++ EE ++ + L +E + L +E+ + K+RLLRL+A+++N+ Sbjct: 24 EVEGNSEESSKEEESNNSEISDENLSEENLKLKDENEKLKNELDAAKDRLLRLSAEYENY 83
Query: 567 RKRSERDRIAVGTNVKGDVVN 629 R R+ +++ + T+ DV+N Sbjct: 84 RNRTAKEKEGIYTDACSDVIN 104
>sp|A6LRN3|GRPE_CLOB8 Protein grpE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=grpE PE=3 SV=1 Length = 207
Score = 42.7 bits (99), Expect = 0.002 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Frame = +3
Query: 408 SNNDEAALEELD--VKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRSE 581 S N EAA E+ + VK Q+ E +K L +E+ + K+RLLRL A++DN+RKR+ Sbjct: 45 SENIEAAEEDQEDLVKNQEEENKK---------LREELDATKDRLLRLTAEYDNYRKRTA 95
Query: 582 RDRIAVGTNVKGDVV 626 +++ + ++ DV+ Sbjct: 96 KEKEGIYSDAYVDVL 110
>sp|Q661A2|GRPE_BORGA Protein grpE OS=Borrelia garinii GN=grpE PE=3 SV=1 Length = 187
Score = 41.2 bits (95), Expect = 0.004 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Frame = +3
Query: 408 SNNDEAALEELDVKFQQLEKEKNMYA----KQVSTLNDEVLSLKERLLRLNADFDNFRKR 575 + ND + D K + +K++N+ K+++ L +E+ +LK+ LR A+F+NFRKR Sbjct: 6 TKNDAEKNNKQDNKSTKSQKKENLNLVNSDKKITELENEISNLKDLYLRKQAEFENFRKR 65
Query: 576 SERDR 590 E+++ Sbjct: 66 LEKEK 70
>sp|Q7UA77|GRPE_SYNPX Protein grpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1 Length = 218
Score = 40.8 bits (94), Expect = 0.006 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = +3
Query: 420 EAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRSERDR 590 E +L + + QQLE E + TL E +L+ + +R+ ADFDNFRKR RD+ Sbjct: 36 EGSLTDPAERLQQLEHE-------LQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQ 85
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NPB5 |
Definition |
tr|A9NPB5|A9NPB5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
85 |
Score (bit) |
90.5 |
E-value |
7.0e-17 |
Report |
|