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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954291
Clone id TST39A01NGRL0020_A22
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAACCGGGCATGGGACTCCCAGATATGTAGGGGGGGCACACTAATGGTGGTAATGCTTTT
GGTATGGTTGATGCTCGAAGGGCTTGGCAGCCATGAGCAGGGCTCACAGGTGATTAACAA
TGTAAGGAATGCGACATGGACAAATGAAGAAGACATATTTGATGTAGGACAGAACTCGTC
TTGCGAGAATGCGGGCTCCTGTGAGCACCAGCCTGCGCCTCGCCTGGGTTGCTTTATCTG
GAAAGTTTCCTGGCTTGGATCCACAACAAGGGAATACAAGATCAGTGAGGATAAGGGGTA
TGCGTGGCGAGTGAGCATGCACGGACTTCTGCTCACTAGAAGGTGTTGGCTAAGATGGAG
TCATTGGACTCATGGCAGTGAGGCAGCAGATGAGCGGTATACTTATTGCGGCCAGCAAGT
CACTGCGTCGATGTGCGACTCCAGAATGTGGGGATGGCAGCCAAGCGACTCCCTTGGGCT
GATTGCGTGGACTCAGTTTATGGCAAGAGAAGACACTAGGTATATGCTTGTGCATGGTGC
TGGAAACTATACACCACGTTCCGAGGATGAGCCCTATGATTTCTTGGAAGATGTAGAGGC
ACTTGATGA
■■Homology search results ■■ -
sp_hit_id Q28UX6
Definition sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain CCS1)
Align length 70
Score (bit) 32.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954291|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A22, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' O...    32   2.5  
sp|Q6IEZ7|OR2T5_HUMAN Olfactory receptor 2T5 OS=Homo sapiens GN=...    32   2.5  
sp|Q8NH02|O2T29_HUMAN Olfactory receptor 2T29 OS=Homo sapiens GN...    32   2.5  
sp|Q8NHA4|O2AE1_HUMAN Olfactory receptor 2AE1 OS=Homo sapiens GN...    32   2.5  
sp|P51655|GPC4_MOUSE Glypican-4 OS=Mus musculus GN=Gpc4 PE=2 SV=2      31   4.3  
sp|O75487|GPC4_HUMAN Glypican-4 OS=Homo sapiens GN=GPC4 PE=1 SV=4      31   4.3  
sp|A8LM41|RPOC_DINSH DNA-directed RNA polymerase subunit beta' O...    31   5.6  
sp|Q55E58|PATS1_DICDI Probable serine/threonine-protein kinase p...    30   7.4  
sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal dom...    30   7.4  
sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting ATPase ...    30   7.4  
sp|P23220|AT2B1_PIG Plasma membrane calcium-transporting ATPase ...    30   7.4  
sp|P20020|AT2B1_HUMAN Plasma membrane calcium-transporting ATPas...    30   7.4  

>sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta'
           OS=Jannaschia sp. (strain CCS1) GN=rpoC PE=3 SV=1
          Length = 1404

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 380 EAADERYTYCGQQVTASMCDSRM-WGWQPSDSLGLIAWTQFMAREDTRYMLVHGAGNYTP 556
           +  D  Y YCGQ+ +   CD  M  G++ +   G+      M   DT++ LV  A +   
Sbjct: 604 QVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDTKWTLVEDARDQVE 663

Query: 557 RSEDEPYDFL 586
             E +  D L
Sbjct: 664 EFEQQYMDGL 673


>sp|Q6IEZ7|OR2T5_HUMAN Olfactory receptor 2T5 OS=Homo sapiens
           GN=OR2T5 PE=2 SV=1
          Length = 315

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 310 SPRIPLILTDLVFPCCGSKPGNFPDKATQARRRLVLTGARILARRVLSYIKYVFFICPCR 131
           S  +P +L D V    G    + P+   Q    L L G+       ++Y +YV    P R
Sbjct: 79  SVTVPKMLLDQVM---GVNKVSAPECGMQMFLYLTLAGSEFFLLATMAYDRYVAICHPLR 135

Query: 130 IPYIVNHL*ALLMAA 86
            P ++NH   L +A+
Sbjct: 136 YPVLMNHRVCLFLAS 150


>sp|Q8NH02|O2T29_HUMAN Olfactory receptor 2T29 OS=Homo sapiens
           GN=OR2T29 PE=2 SV=2
          Length = 315

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 310 SPRIPLILTDLVFPCCGSKPGNFPDKATQARRRLVLTGARILARRVLSYIKYVFFICPCR 131
           S  +P +L D V    G    + P+   Q    L L G+       ++Y +YV    P R
Sbjct: 79  SVTVPKMLLDQVM---GVNKVSAPECGMQMFLYLTLAGSEFFLLATMAYDRYVAICHPLR 135

Query: 130 IPYIVNHL*ALLMAA 86
            P ++NH   L +A+
Sbjct: 136 YPVLMNHRVCLFLAS 150


>sp|Q8NHA4|O2AE1_HUMAN Olfactory receptor 2AE1 OS=Homo sapiens
           GN=OR2AE1 PE=2 SV=1
          Length = 323

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
 Frame = -3

Query: 262 GSKPGNFPDKATQARRRLVLTGARILARRVLSYIKYVFFICPCRIPYIVNHL*ALLMAAK 83
           G K  +F   ATQ    L L GA      V+SY +YV    P R   ++N    L+MA  
Sbjct: 88  GKKSISFVGCATQHFLYLCLGGAECFLLAVMSYDRYVAICHPLRYAVLMNKKVGLMMAVM 147

Query: 82  PF--------------EHQPY---QKHYHH*CAPPTYLGVPC 8
            +               H P+   +K YH  C  P  + + C
Sbjct: 148 SWLGASVNSLIHMAILMHFPFCGPRKVYHFYCEFPAVVKLVC 189


>sp|P51655|GPC4_MOUSE Glypican-4 OS=Mus musculus GN=Gpc4 PE=2 SV=2
          Length = 557

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 116 NNVRNATWTNEEDIFDVGQNSSCENAGS-CEHQPAP 220
           + ++NA   N+ D FD+   SS E +GS CE+Q  P
Sbjct: 473 SKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCP 508


>sp|O75487|GPC4_HUMAN Glypican-4 OS=Homo sapiens GN=GPC4 PE=1 SV=4
          Length = 556

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 116 NNVRNATWTNEEDIFDVGQNSSCENAGS-CEHQPAP 220
           + ++NA   N+ D FD+   SS E +GS CE+Q  P
Sbjct: 473 SKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCP 508


>sp|A8LM41|RPOC_DINSH DNA-directed RNA polymerase subunit beta'
           OS=Dinoroseobacter shibae (strain DFL 12) GN=rpoC PE=3
           SV=1
          Length = 1415

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 380 EAADERYTYCGQQVTASMCDSRM-WGWQPSDSLGLIAWTQFMAREDTRYMLVHGAGNYTP 556
           +  D  Y YCGQ+ +   CD  M  G++ +   G+      M   DT++ +V G  +   
Sbjct: 604 QVIDTVYRYCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMLIPDTKWDIVEGVRDQVK 663

Query: 557 RSEDEPYDFL 586
             E +  D L
Sbjct: 664 EFEQQYMDGL 673


>sp|Q55E58|PATS1_DICDI Probable serine/threonine-protein kinase pats1
            OS=Dictyostelium discoideum GN=pats1 PE=3 SV=1
          Length = 3184

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
 Frame = +2

Query: 89   SHEQGSQVINNVRNATWTNEEDIFDVGQNSSCENAGSCEHQPAPRL------GCFIWKVS 250
            +HE+    +  V +  WT   D      +S+C++  + E+  + R+      G F+W  S
Sbjct: 2909 AHERAIHAMIQVDDHVWTASSDGTIKVWSSTCQSVHTIENAHSSRIFTLELVGDFVWSGS 2968

Query: 251  W-----LGSTTREYKISEDKG 298
            W     + ST   + +SE+ G
Sbjct: 2969 WDTTIKIWSTKDYHLVSENSG 2989


>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain
           phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=2
          Length = 961

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 292 ILTDLVFPCCGSKPGNFPDKATQARRRLVLTGARILARRVLS 167
           +L D+     G  P NFP + T+        GA+IL R VLS
Sbjct: 633 VLADVAIIFSGLHPTNFPIEKTREHYHATALGAKILTRLVLS 674


>sp|P11505|AT2B1_RAT Plasma membrane calcium-transporting ATPase 1
            OS=Rattus norvegicus GN=Atp2b1 PE=2 SV=2
          Length = 1258

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 410  GQQVTASMCDSRMWGWQPSDSLGLIAWTQFMAREDT-RYMLVHGAGNYTPRSEDEPYDFL 586
            G+  + S      W W     +G + W Q ++   T R   +  AG+ T + E    +  
Sbjct: 1028 GKPFSCSELSIEQWLWSIFLGMGTLLWGQLISTIPTSRLKFLKEAGHGTQKEEIPEEELA 1087

Query: 587  EDVEALD 607
            EDVE +D
Sbjct: 1088 EDVEEID 1094
tr_hit_id A1CVI2
Definition tr|A1CVI2|A1CVI2_NEOFI DEAD/DEAH box helicase, putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
Align length 57
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954291|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_A22, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CVI2|A1CVI2_NEOFI DEAD/DEAH box helicase, putative OS=Neosa...    35   2.6  
tr|B6KCF6|B6KCF6_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.6  
tr|B3C9V5|B3C9V5_9BACE Putative uncharacterized protein OS=Bacte...    34   5.8  
tr|B1M5F9|B1M5F9_METRJ Cyclin-dependent kinase inhibitor 1C (P57...    34   5.8  
tr|A9RRL6|A9RRL6_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.8  

>tr|A1CVI2|A1CVI2_NEOFI DEAD/DEAH box helicase, putative
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_045790 PE=4 SV=1
          Length = 624

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 353 RWSHWTHGSEAADERYTYCGQQVTASMCDSRMWGWQPSDSLGLIAWTQFMAREDTRY 523
           RWSH   GS+AA    T  G Q       ++ W W P+ S G   W+    RE  ++
Sbjct: 105 RWSHAAQGSQAAQGSQTAQGSQAAQGSQAAQAWLWGPNPSTGR-EWSSERFREALKW 160


>tr|B6KCF6|B6KCF6_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_068220 PE=4 SV=1
          Length = 1769

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
 Frame = -1

Query: 273  SLVVDPSQETFQIKQPR-----RGAGWCSQE-PAFSQDEFCPTSNMSSSFVHVAFLTLLI 112
            SL   P++  F+ + PR     RG  W +   P FS             F H +FL+   
Sbjct: 1206 SLTAQPTKSCFRHRSPRSRSASRGPSWAAPRVPHFS-------------FPHFSFLSASS 1252

Query: 111  TCEPCSWLPSPSSINHTKS 55
            T  PCS   SPSS +H  S
Sbjct: 1253 TLSPCSLPCSPSSSSHGSS 1271


>tr|B3C9V5|B3C9V5_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_01269
           PE=4 SV=1
          Length = 906

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
 Frame = +2

Query: 338 RRCWLRWSHWTHGS--EAADER-YTYCGQQVTASMCDSRMWG---------WQPSDSLGL 481
           +R ++R ++W   +    +DER Y      + + +   RMWG         +Q  D +GL
Sbjct: 397 KRLFIRGTNWIPEAMLRTSDERTYAELRYSLQSGVNLLRMWGGGIAESDYFFQLCDEMGL 456

Query: 482 IAWTQFMAREDTRYMLVHGAGNY 550
           + W +F    DTR+   H  GNY
Sbjct: 457 LVWQEFWMTGDTRH--PHDKGNY 477


>tr|B1M5F9|B1M5F9_METRJ Cyclin-dependent kinase inhibitor 1C (P57,
           Kip2) OS=Methylobacterium radiotolerans (strain ATCC
           27329 / DSM 1819 / JCM 2831) GN=Mrad2831_1555 PE=3 SV=1
          Length = 124

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -1

Query: 297 PLSSLILYSLVVDPSQETFQIKQPRRGAG----WCSQE 196
           PL SL L     DP+Q T  ++ P  G+G    WC+QE
Sbjct: 74  PLGSLTLRGTAADPAQTTASLRAPATGSGASKPWCAQE 111


>tr|A9RRL6|A9RRL6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_69684 PE=4 SV=1
          Length = 695

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +2

Query: 302 AWRVSMH---GLLLTRRCW--LRWSHWTHGSEAADERYTYCGQQVTASMCD 439
           AW V  H   G+ + R CW  L  S +T G++ ++E+  +CGQ     +CD
Sbjct: 240 AWEVMEHPHLGVGICRDCWGFLFSSPFTKGADGSEEQCRWCGQGGNIVLCD 290