DK954293 |
Clone id |
TST39A01NGRL0020_A24 |
Library |
TST39 |
Length |
595 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_A24. 5' end sequence. |
Accession |
DK954293 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL230Contig1 |
Sequence |
GCTACGCGCGCGCCGCGCCCACACACACACACACACACACATTGACCTCTCTCTCAAAAC ACATACACACACGCACGCAACAGGTTTCTCCTCTCTTATTTTGTACATCTGTGTATTTTA GCACTCGCAGCTTCAAGTCATGGTGTTTGGCAAGGCAAAGAATGCGGCTCTGCAAGTGGT TAAAGGTGTAGACCTTGAGCGCTACCAAGGAAAATGGTATGAGATAGCCAACCTTCCGTC GCGTTTCCAACCTAAAGGAGGCAAGAACACAACTGCGACATACACTTTGCAGCCTGATGG TACCATCCATGTCTTGAATGAGACCTGGCTCGATGGGAAACGAGCCTCCATTGAAGGTTC TGCATGGAAGGTTGATCCCAACAGTGACGAAGCGAAGTTGAAAGTTCGTTTTTGGCTGCC CCCTTTCCTTCCCCTCTTTCCTGTGAATGGCGATTACTGGGTTATGGTCCTTGATTCGGA GTACCGATGGGCTCTCGTCGGCCAGCCCTCAAGGAATTACCTTTGGGTTCTGAGTCGGAC CCCACAATTGAGTGATGATGTATATGCAGACTTGCTGGCACATGCCGAGAAGGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0A901 |
Definition |
sp|P0A901|BLC_ECOLI Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) |
Align length |
142 |
Score (bit) |
92.0 |
E-value |
2.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954293|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_A24, 5' (595 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0A901|BLC_ECOLI Outer membrane lipoprotein blc OS=Escherichi... 92 2e-18 sp|P0A902|BLC_ECO57 Outer membrane lipoprotein blc OS=Escherichi... 92 2e-18 sp|Q46036|BLC_CITFR Outer membrane lipoprotein blc OS=Citrobacte... 92 2e-18 sp|Q08790|BLC_VIBCH Outer membrane lipoprotein blc OS=Vibrio cho... 69 1e-11 sp|Q5URA7|YR877_MIMIV Putative lipocalin R877 OS=Acanthamoeba po... 62 2e-09 sp|P05090|APOD_HUMAN Apolipoprotein D OS=Homo sapiens GN=APOD PE... 61 4e-09 sp|P23593|APOD_RAT Apolipoprotein D OS=Rattus norvegicus GN=Apod... 58 4e-08 sp|P51910|APOD_MOUSE Apolipoprotein D OS=Mus musculus GN=Apod PE... 57 9e-08 sp|Q32KY0|APOD_BOVIN Apolipoprotein D OS=Bos taurus GN=APOD PE=2... 56 2e-07 sp|P51909|APOD_CAVPO Apolipoprotein D OS=Cavia porcellus GN=APOD... 55 3e-07 sp|Q8SPI0|APOD_MACFA Apolipoprotein D OS=Macaca fascicularis GN=... 55 3e-07 sp|P37153|APOD_RABIT Apolipoprotein D OS=Oryctolagus cuniculus G... 50 1e-05 sp|P09464|BBP_PIEBR Bilin-binding protein OS=Pieris brassicae PE... 40 0.007 sp|P49291|LAZA_SCHAM Lazarillo protein OS=Schistocerca americana... 37 0.098 sp|Q5R5N6|BGLR_PONAB Beta-glucuronidase OS=Pongo abelii GN=GUSB ... 35 0.37 sp|P24775|RETB2_ONCMY Plasma retinol-binding protein 2 OS=Oncorh... 34 0.49 sp|P08236|BGLR_HUMAN Beta-glucuronidase OS=Homo sapiens GN=GUSB ... 33 1.1 sp|Q80TL1|ADCY2_MOUSE Adenylate cyclase type 2 OS=Mus musculus G... 33 1.1 sp|P26769|ADCY2_RAT Adenylate cyclase type 2 OS=Rattus norvegicu... 33 1.4 sp|P08938|PURP_CHICK Purpurin OS=Gallus gallus PE=1 SV=1 32 1.9 sp|Q5ECE3|LOPAP_LONON Lopap OS=Lonomia obliqua PE=1 SV=2 32 1.9 sp|P02755|LACB_BUBBU Beta-lactoglobulin OS=Bubalus bubalis GN=LG... 32 1.9 sp|P02754|LACB_BOVIN Beta-lactoglobulin OS=Bos taurus GN=LGB PE=... 32 1.9 sp|Q68EI3|CBPC5_DANRE Cytosolic carboxypeptidase-like protein 5 ... 32 2.4 sp|P02756|LACB_CAPHI Beta-lactoglobulin OS=Capra hircus GN=LGB P... 32 2.4 sp|A2R9H9|INO80_ASPNC Putative DNA helicase ino80 OS=Aspergillus... 32 3.1 sp|P24774|RETB1_ONCMY Plasma retinol-binding protein 1 OS=Oncorh... 31 5.4 sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficien... 30 7.0 sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 30 7.1 sp|Q6IE37|OVOS1_HUMAN Ovostatin homolog 1 OS=Homo sapiens GN=OVO... 30 7.1
>sp|P0A901|BLC_ECOLI Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) GN=blc PE=1 SV=1 Length = 177
Score = 92.0 bits (227), Expect = 2e-18 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 2/142 (1%) Frame = +2
Query: 176 VVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLNETWLD--GKRAS 349 VV D +RY G WYEIA RF+ +G + TATY+L+ DG ++V+N+ + G Sbjct: 30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQ 88
Query: 350 IEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSRNYLWV 529 EG A+ + A LKV G Y V+ LD EYR ALV P R+YLW+ Sbjct: 89 SEGKAYFTGAPT-RAALKVSFFGPFY-------GGYNVIALDREYRHALVCGPDRDYLWI 140
Query: 530 LSRTPQLSDDVYADLLAHAEKE 595 LSRTP +SD+V ++LA A +E Sbjct: 141 LSRTPTISDEVKQEMLAVATRE 162
>sp|P0A902|BLC_ECO57 Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1 Length = 177
Score = 92.0 bits (227), Expect = 2e-18 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 2/142 (1%) Frame = +2
Query: 176 VVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLNETWLD--GKRAS 349 VV D +RY G WYEIA RF+ +G + TATY+L+ DG ++V+N+ + G Sbjct: 30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQ 88
Query: 350 IEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSRNYLWV 529 EG A+ + A LKV G Y V+ LD EYR ALV P R+YLW+ Sbjct: 89 SEGKAYFTGAPT-RAALKVSFFGPFY-------GGYNVIALDREYRHALVCGPDRDYLWI 140
Query: 530 LSRTPQLSDDVYADLLAHAEKE 595 LSRTP +SD+V ++LA A +E Sbjct: 141 LSRTPTISDEVKQEMLAVATRE 162
>sp|Q46036|BLC_CITFR Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1 Length = 177
Score = 92.0 bits (227), Expect = 2e-18 Identities = 60/143 (41%), Positives = 81/143 (56%), Gaps = 3/143 (2%) Frame = +2
Query: 176 VVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLNETWLDGKRA--S 349 VV D +RY G WYEIA RF+ +G TATY+L+ DG I+V+N+ + + Sbjct: 30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLDKVTATYSLRDDGGINVINKGYNPDREMWQK 88
Query: 350 IEGSAWKV-DPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSRNYLW 526 EG A+ DP++ A LKV G Y V+ LD EYR ALV P R+YLW Sbjct: 89 TEGKAYFTGDPST--AALKVSFFGPFY-------GGYNVIALDREYRHALVCGPDRDYLW 139
Query: 527 VLSRTPQLSDDVYADLLAHAEKE 595 +LSRTP +SD++ +LA A +E Sbjct: 140 ILSRTPTISDEMKQQMLAIATRE 162
>sp|Q08790|BLC_VIBCH Outer membrane lipoprotein blc OS=Vibrio cholerae GN=blc PE=3 SV=2 Length = 171
Score = 69.3 bits (168), Expect = 1e-11 Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 3/129 (2%) Frame = +2
Query: 167 ALQVVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLNETWLD--GK 340 +++ V +L Y GKWYE+A L F+ +G TA Y ++ DG I VLN + + G+ Sbjct: 22 SVKPVSDFELNNYLGKWYEVARLDHSFE-RGLSQVTAEYRVRNDGGISVLNRGYSEEKGE 80
Query: 341 RASIEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSE-YRWALVGQPSRN 517 EG A+ V+ ++D LKV G Y V LD E Y +A V P+ Sbjct: 81 WKEAEGKAYFVNGSTD-GYLKVSFFGPFY-------GSYVVFELDRENYSYAFVSGPNTE 132
Query: 518 YLWVLSRTP 544 YLW+LSRTP Sbjct: 133 YLWLLSRTP 141
>sp|Q5URA7|YR877_MIMIV Putative lipocalin R877 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R877 PE=1 SV=1 Length = 169
Score = 62.0 bits (149), Expect = 2e-09 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 6/136 (4%) Frame = +2
Query: 188 VDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLNETWLDGKRASIEGSAW 367 +D++RY G WYEIA LP+ FQ KG N+TA Y L I V N ++G+ S+ G+A Sbjct: 28 LDIQRYMGTWYEIARLPTSFQ-KGCVNSTANYQLLEPNKIQVTNNCEINGRINSVTGTAI 86
Query: 368 K------VDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSRNYLWV 529 V A L V Y V+ +D Y++A+V + LW+ Sbjct: 87 PAANTRIVSGFLTPASLMVNFGYGF--------SPYNVIFIDENYQYAIV-SGGNDTLWI 137
Query: 530 LSRTPQLSDDVYADLL 577 LSR ++ Y L+ Sbjct: 138 LSRFKNINQSTYNQLV 153
>sp|P05090|APOD_HUMAN Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1 Length = 189
Score = 61.2 bits (147), Expect = 4e-09 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 8/155 (5%) Frame = +2
Query: 134 QVMVFGKAKNAALQVVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHV 313 Q GK N +Q + D+ +Y G+WYEI +P+ F+ G+ A Y+L +G I V Sbjct: 21 QAFHLGKCPNPPVQ--ENFDVNKYLGRWYEIEKIPTTFE--NGRCIQANYSLMENGKIKV 76
Query: 314 LN-ETWLDGKRASIEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRW 490 LN E DG IEG A V+ ++ AKL+V+ + YW++ D E + Sbjct: 77 LNQELRADGTVNQIEGEATPVN-LTEPAKLEVKFSWFMP------SAPYWILATDYE-NY 128
Query: 491 ALVGQPS-------RNYLWVLSRTPQLSDDVYADL 574 ALV + ++ W+L+R P L + L Sbjct: 129 ALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSL 163
>sp|P23593|APOD_RAT Apolipoprotein D OS=Rattus norvegicus GN=Apod PE=1 SV=1 Length = 189
Score = 57.8 bits (138), Expect = 4e-08 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Frame = +2
Query: 176 VVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLN-ETWLDGKRASI 352 V + D+++Y G+WYEI +P F+ G A Y+L +G I VLN E DG + Sbjct: 33 VQENFDVKKYLGRWYEIEKIPVSFEK--GNCIQANYSLMENGNIKVLNKELRPDGTLNQV 90
Query: 353 EGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSR------ 514 EG A K S+ AKL+V+ YW++ D E +ALV + Sbjct: 91 EGEA-KQSNMSEPAKLEVQFFSLMPP------APYWILATDYE-SYALVYSCTTFFWFFH 142
Query: 515 -NYLWVLSRTPQL 550 +Y+W+L R P L Sbjct: 143 VDYVWILGRNPYL 155
>sp|P51910|APOD_MOUSE Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1 Length = 189
Score = 56.6 bits (135), Expect = 9e-08 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Frame = +2
Query: 176 VVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHVLN-ETWLDGKRASI 352 V + D+++Y G+WYEI +P+ F+ G A Y+L +G I VLN E DG + Sbjct: 33 VQENFDVKKYLGRWYEIEKIPASFEK--GNCIQANYSLMENGNIEVLNKELSPDGTMNQV 90
Query: 353 EGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRWALVGQPSR------ 514 +G A K S+ AKL+V+ YW++ D E +ALV + Sbjct: 91 KGEA-KQSNVSEPAKLEVQFFPLMPP------APYWILATDYE-NYALVYSCTTFFWLFH 142
Query: 515 -NYLWVLSRTPQL 550 +++W+L R P L Sbjct: 143 VDFVWILGRNPYL 155
>sp|Q32KY0|APOD_BOVIN Apolipoprotein D OS=Bos taurus GN=APOD PE=2 SV=1 Length = 189
Score = 55.8 bits (133), Expect = 2e-07 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 8/147 (5%) Frame = +2
Query: 134 QVMVFGKAKNAALQVVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHV 313 Q GK + +Q + D+ +Y GKWYEI +P F+ G A Y+L+ +G + V Sbjct: 21 QAFHLGKCPHPPVQ--ENFDVNKYLGKWYEIEKIPVSFEK--GSCIQANYSLKENGNVEV 76
Query: 314 LN-ETWLDGKRASIEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRW 490 +N E DG IEG A + ++ AKL V+ + YWV+ D E + Sbjct: 77 INKELRADGTVNQIEGEA-TPENITEPAKLAVKFFWFMP------SAPYWVLATDYE-NY 128
Query: 491 ALVGQPS-------RNYLWVLSRTPQL 550 ALV + +++W+L R P L Sbjct: 129 ALVYSCTTIIWLFHMDHVWILGRNPYL 155
>sp|P51909|APOD_CAVPO Apolipoprotein D OS=Cavia porcellus GN=APOD PE=2 SV=1 Length = 189
Score = 55.1 bits (131), Expect = 3e-07 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Frame = +2
Query: 134 QVMVFGKAKNAALQVVKGVDLERYQGKWYEIANLPSRFQPKGGKNTTATYTLQPDGTIHV 313 Q FGK N +Q + DL +Y G+WYEI +P F+ G A Y+L+ +G + V Sbjct: 21 QAFHFGKCPNPPVQ--ENFDLNKYLGRWYEIEKIPVSFEK--GNCIQANYSLKENGRVKV 76
Query: 314 LN-ETWLDGKRASIEGSAWKVDPNSDEAKLKVRXXXXXXXXXXXVNGDYWVMVLDSEYRW 490 LN E DG IEG A + ++ AKL V+ + YWV+ D + + Sbjct: 77 LNQELRPDGTVNQIEGEATHSN-ITEPAKLGVKFFQLMP------SAPYWVLATDYD-NY 128
Query: 491 ALVGQPSR-------NYLWVLSRTPQLSDD 559 ALV + +++W+L R L + Sbjct: 129 ALVYSCTNIIWLFHVDHIWILGRNRYLPQE 158
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q38JB9 |
Definition |
tr|Q38JB9|Q38JB9_POPTM Temperature-induced lipocalin OS=Populus tremuloides |
Align length |
147 |
Score (bit) |
194.0 |
E-value |
4.0e-48 |
Report |
|