DK954298 |
Clone id |
TST39A01NGRL0020_B05 |
Library |
TST39 |
Length |
402 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_B05. 5' end sequence. |
Accession |
DK954298 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL310Contig1 |
Sequence |
GGTGCTTTCCGGAAAATATACGGAGGAAGGAAAAGTAATGGCAGTCGCCCTTCACATTTT GGAAAAAGCAGTGGCTCCATTGCTCGTGATGTTCTAAAGCAACTTGAGAAAATCGACATT GTTGAGAAAGATCCTAAAGGAGGCAGAAAGATAACTTCAAATGGACAACGGGATCTAGAT CAAGTAGCAGGACGGATTGCTGTCCCGGCAGCTTAGTGTATTTTGACTTGTAGCCTAGAG TTTTTCCAAGCTGGAGAGATTTTAGTTGAGACACAGATGAGGCATTTTTCTTTTGCCTTA GCCTTGATCTAAAAATTTTACTCCGTGTTAGACTCTTGTGAAGGTATAAGGGGTCAGATT GTTTCTATCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SGA6 |
Definition |
sp|Q9SGA6|RS191_ARATH 40S ribosomal protein S19-1 OS=Arabidopsis thaliana |
Align length |
68 |
Score (bit) |
105.0 |
E-value |
5.0e-23 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7Q3 |
Definition |
tr|A9S7Q3|A9S7Q3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
71 |
Score (bit) |
124.0 |
E-value |
2.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954298|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_B05, 5' (371 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S7Q3|A9S7Q3_PHYPA Predicted protein OS=Physcomitrella paten... 124 2e-27 tr|A9RXE2|A9RXE2_PHYPA Predicted protein OS=Physcomitrella paten... 122 1e-26 tr|A9RQ90|A9RQ90_PHYPA Predicted protein OS=Physcomitrella paten... 121 2e-26 tr|A9SNK0|A9SNK0_PHYPA Predicted protein OS=Physcomitrella paten... 119 6e-26 tr|A9SJ99|A9SJ99_PHYPA Predicted protein OS=Physcomitrella paten... 116 6e-25 tr|A9NKW9|A9NKW9_PICSI Putative uncharacterized protein OS=Picea... 111 2e-23 tr|A5BGC5|A5BGC5_VITVI Putative uncharacterized protein (Chromos... 108 1e-22 tr|A9NL45|A9NL45_PICSI Putative uncharacterized protein OS=Picea... 107 2e-22 tr|A9PGL4|A9PGL4_POPTR Putative uncharacterized protein OS=Popul... 107 4e-22 tr|A5C4J2|A5C4J2_VITVI Putative uncharacterized protein (Chromos... 105 9e-22 tr|Q0WSH0|Q0WSH0_ARATH 40S ribosomal protein S19-like OS=Arabido... 103 3e-21 tr|B4FP25|B4FP25_MAIZE 40S ribosomal protein S19 OS=Zea mays PE=... 103 3e-21 tr|Q2VCJ6|Q2VCJ6_SOLTU 40S ribosomal protein S19-like OS=Solanum... 103 6e-21 tr|Q67ZX8|Q67ZX8_ARATH 40S ribosomal protein S19-like OS=Arabido... 102 7e-21 tr|Q9ZRW2|Q9ZRW2_CICAR 40S ribosomal protein S19 (Fragment) OS=C... 101 2e-20 tr|Q5KQL3|Q5KQL3_ORYSJ Putative ribosomal protein S19 OS=Oryza s... 101 2e-20 tr|Q10JD4|Q10JD4_ORYSJ Os03g0424500 protein OS=Oryza sativa subs... 101 2e-20 tr|B6T3G4|B6T3G4_MAIZE 40S ribosomal protein S19 OS=Zea mays PE=... 101 2e-20 tr|B3TLL5|B3TLL5_ELAGV 40S ribosomal protein S19 OS=Elaeis guine... 101 2e-20 tr|A2XI59|A2XI59_ORYSI Putative uncharacterized protein OS=Oryza... 101 2e-20 tr|B4FD90|B4FD90_MAIZE 40S ribosomal protein S19 OS=Zea mays PE=... 100 4e-20 tr|Q10JD1|Q10JD1_ORYSJ Retrotransposon protein, putative, Ty1-co... 100 6e-20 tr|B7FHE5|B7FHE5_MEDTR Putative uncharacterized protein OS=Medic... 99 8e-20 tr|A6MZL9|A6MZL9_ORYSI 40S ribosomal protein S19 OS=Oryza sativa... 99 1e-19 tr|B8AK61|B8AK61_ORYSI Putative uncharacterized protein OS=Oryza... 97 5e-19 tr|B0Z9Q8|B0Z9Q8_9BILA Ribosomal protein rps19 OS=Lineus viridis... 94 3e-18 tr|Q5KQL4|Q5KQL4_ORYSJ Putative ribosomal protein S19 OS=Oryza s... 92 1e-17 tr|A8UFX1|A8UFX1_9ANNE Ribosomal protein rps19 OS=Eurythoe compl... 91 2e-17 tr|Q6PHL6|Q6PHL6_XENLA Rps19-prov protein OS=Xenopus laevis GN=r... 90 5e-17 tr|A8E6C2|A8E6C2_9BILA Putative 40S ribosomal protein S19 OS=Spa... 88 2e-16
>tr|A9S7Q3|A9S7Q3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163322 PE=4 SV=1 Length = 144
Score = 124 bits (312), Expect = 2e-27 Identities = 62/71 (87%), Positives = 65/71 (91%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAFRKIYGGRKSNG RPSHF KSSGSIAR LKQLE +DIVEKDP+GGR+ITSNGQRDLD Sbjct: 74 GAFRKIYGGRKSNGVRPSHFAKSSGSIARHCLKQLEALDIVEKDPQGGRRITSNGQRDLD 133
Query: 181 QVAGRIAVPAA 213 QVAGRIAV AA Sbjct: 134 QVAGRIAVAAA 144
>tr|A9RXE2|A9RXE2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_206524 PE=4 SV=1 Length = 142
Score = 122 bits (305), Expect = 1e-26 Identities = 60/71 (84%), Positives = 66/71 (92%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAF+KIYGGRKSNG RPSHF KSSGSIAR LKQLE+++IVEKDPKGGR+ITS+GQRDLD Sbjct: 72 GAFKKIYGGRKSNGVRPSHFAKSSGSIARHCLKQLEQLNIVEKDPKGGRRITSDGQRDLD 131
Query: 181 QVAGRIAVPAA 213 QVAGRIAV AA Sbjct: 132 QVAGRIAVTAA 142
>tr|A9RQ90|A9RQ90_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_204626 PE=4 SV=1 Length = 142
Score = 121 bits (303), Expect = 2e-26 Identities = 60/71 (84%), Positives = 65/71 (91%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAF+KIYGGRKSNG RPSHF KSSGSIAR LKQLE ++IVEKDPKGGR+ITS+GQRDLD Sbjct: 72 GAFKKIYGGRKSNGVRPSHFAKSSGSIARHCLKQLEALNIVEKDPKGGRRITSDGQRDLD 131
Query: 181 QVAGRIAVPAA 213 QVAGRIAV AA Sbjct: 132 QVAGRIAVAAA 142
>tr|A9SNK0|A9SNK0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186874 PE=4 SV=1 Length = 142
Score = 119 bits (299), Expect = 6e-26 Identities = 59/71 (83%), Positives = 64/71 (90%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAF+KIYGGRKSNG RPSHF KSSGSIAR LKQLE ++IVEKDPKGGR+ITS+GQRDLD Sbjct: 72 GAFKKIYGGRKSNGVRPSHFAKSSGSIARHCLKQLEALNIVEKDPKGGRRITSDGQRDLD 131
Query: 181 QVAGRIAVPAA 213 QVAGRIAV A Sbjct: 132 QVAGRIAVATA 142
>tr|A9SJ99|A9SJ99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109981 PE=4 SV=1 Length = 142
Score = 116 bits (290), Expect = 6e-25 Identities = 57/71 (80%), Positives = 64/71 (90%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAF+KIYGGRKSNG RPSHF KSSGSIAR LKQLE ++IVEKD +GGR+ITS+GQRDLD Sbjct: 72 GAFKKIYGGRKSNGVRPSHFAKSSGSIARHCLKQLEALNIVEKDVRGGRRITSDGQRDLD 131
Query: 181 QVAGRIAVPAA 213 QVAGRIA+ AA Sbjct: 132 QVAGRIAIAAA 142
>tr|A9NKW9|A9NKW9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 144
Score = 111 bits (277), Expect = 2e-23 Identities = 55/70 (78%), Positives = 62/70 (88%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAF KIYGGR+ NG+RP HF KSSGSIAR VL+QLEK++IVE DP GGR+ITS+GQRDLD Sbjct: 74 GAFSKIYGGRQRNGARPPHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLD 133
Query: 181 QVAGRIAVPA 210 QVAGRIAV A Sbjct: 134 QVAGRIAVAA 143
>tr|A5BGC5|A5BGC5_VITVI Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00030059001 PE=4 SV=1 Length = 146
Score = 108 bits (271), Expect = 1e-22 Identities = 51/68 (75%), Positives = 60/68 (88%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 G FR+IYGG K NGSRP HF KSSGSIAR +L+QLEK++I+E DP+GGR+ITS+GQRDLD Sbjct: 77 GGFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEKMNIIENDPRGGRRITSSGQRDLD 136
Query: 181 QVAGRIAV 204 QVAGRI V Sbjct: 137 QVAGRIVV 144
>tr|A9NL45|A9NL45_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 144
Score = 107 bits (268), Expect = 2e-22 Identities = 50/70 (71%), Positives = 61/70 (87%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAFRKIYGG + NG+RP HF KSSGS+AR +L+QLEK++I+E DP GGR+ITS+GQRDLD Sbjct: 74 GAFRKIYGGSQRNGARPPHFCKSSGSVARHILQQLEKMNIIEMDPNGGRRITSSGQRDLD 133
Query: 181 QVAGRIAVPA 210 QVAGR+ V A Sbjct: 134 QVAGRVVVVA 143
>tr|A9PGL4|A9PGL4_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 143
Score = 107 bits (266), Expect = 4e-22 Identities = 50/68 (73%), Positives = 60/68 (88%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAFR+IYGG K NGSRP HF KSSGSIAR +L+QL+ ++I++ DPKGGR+ITS+GQRDLD Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQNVNIIDIDPKGGRRITSSGQRDLD 133
Query: 181 QVAGRIAV 204 QVAGRI V Sbjct: 134 QVAGRIVV 141
>tr|A5C4J2|A5C4J2_VITVI Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00016251001 PE=4 SV=1 Length = 143
Score = 105 bits (263), Expect = 9e-22 Identities = 51/68 (75%), Positives = 60/68 (88%) Frame = +1
Query: 1 GAFRKIYGGRKSNGSRPSHFGKSSGSIARDVLKQLEKIDIVEKDPKGGRKITSNGQRDLD 180 GAFR+IYGG K NGSRP HF KSSGSIAR +L+QL+ ++I+E D KGGR+ITS+GQRDLD Sbjct: 74 GAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQTMNIIELDSKGGRRITSSGQRDLD 133
Query: 181 QVAGRIAV 204 QVAGRIAV Sbjct: 134 QVAGRIAV 141
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