DK954311 |
Clone id |
TST39A01NGRL0020_B18 |
Library |
TST39 |
Length |
636 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_B18. 5' end sequence. |
Accession |
DK954311 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL30Contig1 |
Sequence |
GTCTCCCTCGAGATCATCATCTTTTCGCAGGGGAAAGAGAAAGCTTGGTTGCAGAGACCG TCGGGACGCCATGGCTGCAGCTACCGCATCCTCCCTCACGGCCGCCTGTGTCTCCTCCCT CTCTGCCCACTCCTCCACCTCCCCTGCCCCAGATCACATCAATTGCTCCTCTCCTTTCGC CAAATTCTCGGGTCTCAAGCTAGCCTCCTCCCCGCTTCCTTCCCACCACACCCAAGAGAA GAAGAAGAGAAGCAGTGGCAGCAGGAAGGCGCATCATGTCACTGCAACGGCAGCCGTGGA GGCTCCCCCCAAGACCGATGTCTCGTTGGTGGAGAAGAGCATCAATACTATCCGATTCTT GGCCGTTGATGCAGTTGAGAAGGCTAACTCTGGACACCCAGGTCTTCCCATGGGGTGTGC TCCGATGGGCCACATTCTGTATGACGAGATCATGAGATACAACCCAAAAAATCCCTATTG GTTCAATCGCGACAGGTTCGTCCTTTCTGCGGGCCATGGTTGCATGTTGCAGTATGCACT TCTTCATCTTGCCGGCTACGACAGCGTCCAGGAGGAAGATCTGAAGCAATTCAGGCAATG GGAGAGCCGAACTCCTGGGCATCCTGAAAACTTTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43848 |
Definition |
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum |
Align length |
156 |
Score (bit) |
219.0 |
E-value |
7.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954311|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_B18, 5' (636 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tub... 219 7e-57 sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE... 216 1e-55 sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia ol... 213 9e-55 sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagine... 201 2e-51 sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagin... 183 6e-46 sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 71... 179 8e-45 sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE... 141 2e-33 sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt ... 141 3e-33 sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT... 139 1e-32 sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneu... 138 3e-32 sp|O67642|TKT_AQUAE Transketolase OS=Aquifex aeolicus GN=tkt PE=... 136 1e-31 sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes sero... 134 5e-31 sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes sero... 134 5e-31 sp|O83571|TKT_TREPA Transketolase OS=Treponema pallidum GN=tkt P... 132 2e-30 sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis ... 131 3e-30 sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis ... 131 3e-30 sp|P57958|TKT2_PASMU Transketolase 2 OS=Pasteurella multocida GN... 131 3e-30 sp|P57927|TKT1_PASMU Transketolase 1 OS=Pasteurella multocida GN... 131 3e-30 sp|Q9URM2|TKT_SCHPO Probable transketolase OS=Schizosaccharomyce... 130 4e-30 sp|P23254|TKT1_YEAST Transketolase 1 OS=Saccharomyces cerevisiae... 130 7e-30 sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|Q6GH64|TKT_STAAR Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|P99161|TKT_STAAN Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|P66962|TKT_STAAM Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|Q5HG77|TKT_STAAC Transketolase OS=Staphylococcus aureus (stra... 129 1e-29 sp|Q12630|TKT1_KLULA Transketolase OS=Kluyveromyces lactis GN=TK... 127 4e-29 sp|P34736|TKT_PICST Transketolase OS=Pichia stipitis GN=TKT PE=3... 127 5e-29 sp|P43757|TKT_HAEIN Transketolase OS=Haemophilus influenzae GN=t... 126 8e-29 sp|Q89AY2|TKT_BUCBP Transketolase OS=Buchnera aphidicola subsp. ... 125 2e-28
>sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Length = 741
Score = 219 bits (559), Expect = 7e-57 Identities = 107/156 (68%), Positives = 121/156 (77%) Frame = +2
Query: 167 SSPFAKFSGLKLASSPLPSHHTQEKKKRSSGSRXXXXXXXXXXXXXXXXTDVSLVEKSIN 346 S F+ FSGLK S+P S H + ++ ++ TD ++VEKS+N Sbjct: 30 SLSFSTFSGLK--STPFTSSHRRILPS-TTVTKQQFSVRASAAVETLEKTDAAIVEKSVN 86
Query: 347 TIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGHGCM 526 TIRFLA+DAVEKANSGHPGLPMGCAPMGHILYDE+M+YNPKNPYWFNRDRFVLSAGHGCM Sbjct: 87 TIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCM 146
Query: 527 LQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 LQYALLHLAGYDSVQE+DLK FRQW SR PGHPENF Sbjct: 147 LQYALLHLAGYDSVQEDDLKSFRQWGSRIPGHPENF 182
>sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1 SV=1 Length = 675
Score = 216 bits (549), Expect = 1e-55 Identities = 96/103 (93%), Positives = 102/103 (99%) Frame = +2
Query: 326 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 505 L+EKS+NTIRFLA+DAVEKANSGHPGLPMGCAPMGH+LYDE+MRYNPKNPYWFNRDRFVL Sbjct: 15 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 74
Query: 506 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 SAGHGCMLQYALLHLAGYDSV+EEDLKQFRQW SRTPGHPENF Sbjct: 75 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENF 117
>sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 741
Score = 213 bits (541), Expect = 9e-55 Identities = 99/108 (91%), Positives = 102/108 (94%), Gaps = 1/108 (0%) Frame = +2
Query: 314 TDVS-LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 490 TD+ LVEKS+NTIRFLA+DAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR Sbjct: 75 TDIDQLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 134
Query: 491 DRFVLSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 DRFVLSAGHGCMLQYALLHLAGYDSV EEDLK FRQW SR PGHPENF Sbjct: 135 DRFVLSAGHGCMLQYALLHLAGYDSVLEEDLKTFRQWGSRIPGHPENF 182
>sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1 Length = 676
Score = 201 bits (512), Expect = 2e-51 Identities = 89/103 (86%), Positives = 96/103 (93%) Frame = +2
Query: 326 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 505 LV KS+NTIRFLA+DAVEKA SGHPG+PMGCAPMGH+LYDE MR+NPKNPYWFNRDRFVL Sbjct: 13 LVSKSVNTIRFLAIDAVEKAKSGHPGMPMGCAPMGHVLYDEFMRFNPKNPYWFNRDRFVL 72
Query: 506 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 SAGHGCMLQYALLHL+GYDSV+EEDLK RQW SRTP HPENF Sbjct: 73 SAGHGCMLQYALLHLSGYDSVKEEDLKSLRQWGSRTPAHPENF 115
>sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1 Length = 679
Score = 183 bits (465), Expect = 6e-46 Identities = 81/103 (78%), Positives = 90/103 (87%) Frame = +2
Query: 326 LVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 505 LV KS+NTIRFLA+DAVE SGHPG+PMGCAPMGH+L+DE M++NPKNPYWFNRDRFVL Sbjct: 17 LVVKSVNTIRFLAIDAVENVKSGHPGMPMGCAPMGHVLFDEFMKFNPKNPYWFNRDRFVL 76
Query: 506 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 SAGHG ML Y LLHLAGYDSV+ EDLK RQW S+TP HPENF Sbjct: 77 SAGHGAMLLYGLLHLAGYDSVKVEDLKGLRQWGSKTPAHPENF 119
>sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1 Length = 670
Score = 179 bits (455), Expect = 8e-45 Identities = 83/104 (79%), Positives = 90/104 (86%) Frame = +2
Query: 323 SLVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 502 SL E SIN IRFLAVDA+EKA SGHPGLPMG APM +L++ MRYNPKNP WFNRDRFV Sbjct: 7 SLEELSINAIRFLAVDAIEKAKSGHPGLPMGAAPMAFVLWNRFMRYNPKNPKWFNRDRFV 66
Query: 503 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 LSAGHG MLQYALL+L GYDSV ED+KQFRQWES+TPGHPENF Sbjct: 67 LSAGHGSMLQYALLYLTGYDSVSIEDIKQFRQWESKTPGHPENF 110
>sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=2 Length = 667
Score = 141 bits (356), Expect = 2e-33 Identities = 64/102 (62%), Positives = 82/102 (80%) Frame = +2
Query: 323 SLVEKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 502 ++ +KS+ TIR L++DA+EKANSGHPG+PMG APM + L+ + M +P NP WFNRDRFV Sbjct: 3 TIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFV 62
Query: 503 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 628 LSAGHG L Y++LHL+G+D + EDLK FRQW S+TPGHPE Sbjct: 63 LSAGHGSALLYSMLHLSGFD-LSIEDLKGFRQWGSKTPGHPE 103
>sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1 Length = 666
Score = 141 bits (355), Expect = 3e-33 Identities = 64/97 (65%), Positives = 78/97 (80%) Frame = +2
Query: 338 SINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 517 ++NTIR L++D+VEKANSGHPG+PMG APM L+ + M +NP NP W NRDRFVLSAGH Sbjct: 9 AVNTIRTLSIDSVEKANSGHPGMPMGAAPMAFCLWTKFMNHNPANPDWVNRDRFVLSAGH 68
Query: 518 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 628 G ML Y+LLHL GYD + E+L+ FRQW S+TPGHPE Sbjct: 69 GSMLLYSLLHLTGYD-LSLEELQNFRQWGSKTPGHPE 104
>sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT PE=3 SV=2 Length = 668
Score = 139 bits (350), Expect = 1e-32 Identities = 61/101 (60%), Positives = 81/101 (80%) Frame = +2
Query: 332 EKSINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSA 511 ++ N IRFLA+DAVE ANSGHPGLPMG A + +L+ ++++Y+P P+W +RDRFVLSA Sbjct: 13 DRLANAIRFLAIDAVEAANSGHPGLPMGAADIATVLFTKVLKYDPSRPFWPDRDRFVLSA 72
Query: 512 GHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 634 GHG ML Y++LHLAGY+ V +++K+FRQ S TPGHPENF Sbjct: 73 GHGSMLLYSVLHLAGYEKVTIDEIKRFRQLGSLTPGHPENF 113
>sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneumoniae GN=tkt PE=3 SV=2 Length = 658
Score = 138 bits (347), Expect = 3e-32 Identities = 59/97 (60%), Positives = 75/97 (77%) Frame = +2
Query: 338 SINTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 517 S+N IRFL +DA+ KANSGHPG+ MG APM + L+ + + NP P W NRDRF+LSAGH Sbjct: 5 SVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGH 64
Query: 518 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 628 G ML YALLHL+G++ V +++K FRQW S+TPGHPE Sbjct: 65 GSMLLYALLHLSGFEDVSMDEIKSFRQWGSKTPGHPE 101
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P7Z7 |
Definition |
tr|A9P7Z7|A9P7Z7_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
150 |
Score (bit) |
224.0 |
E-value |
4.0e-57 |
Report |
|