DK954350
Clone id TST39A01NGRL0020_D09
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_D09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTTCACGGGATCGTCGGCCCGCTTGCAGGTAATGGTTTTTCTTGCGCGCAGAGAGAGAGA
GAGAGAGAGAGACCGGTTGAACCTTCAGATCTTGCTTTCGTGTCTATTAGCAGGCGATCC
TGTGTTCTCTTGGTTGTAGCAAAGGGATCTGTAAGGCCTGCCGCTGCTTTAGGGTTTTCC
CGATCCCTGCTTCTTTATTCCTGCCATATGTGACAACAGGGGGCTAATCAGCGCTGTCCA
TTTATCAGTTGGTCGGTGATCTGACACTGCTTTTAGTTGAATCGGCAACAGTGTGATGTC
TCACGCCCTTGGCGACACCACTCCTAATGTGGTGACCCTGGTTCGTCATCTTGGGCCCAA
AGTGCACAAGTCTTGTACTGAATGGGTACAGCATAGCCTTTCCTTGCAACGCTATAAAGG
CTGGGCCATGTCTACGGTGATCTATGGAATTGGATCTGTCGAAGCAACCATATCAAGCCA
GATTTCAATACATGATGCAGTTGCACCGCCGTCTGTGAGAACTGGAAGCTACAGGGTGGC
CCCAAGAATGTTGGCATACAAGGCAAGGCGCACCAAGAGGCGATCTC
■■Homology search results ■■ -
sp_hit_id Q7NTK7
Definition sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
Align length 60
Score (bit) 30.8
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954350|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_D09, 5'
(587 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violace... 31 5.2
sp|Q8XVI2|MURE_RALSO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--... 30 6.8

>sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
GN=cmk PE=3 SV=1
Length = 222

Score = 30.8 bits (68), Expect = 5.2
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1

Query: 518 SQTAVQL-HHVLKSGLIWLLRQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALWAQDDE 342
+Q A +L H L SG ++ L + R W ++AR A+P+++ A+W + ++
Sbjct: 21 AQVAARLAFHYLDSGSLYRLLALHARRRGIAWDDEPALARAAAALPVEFSDGAVWLEGND 80


>sp|Q8XVI2|MURE_RALSO
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase OS=Ralstonia solanacearum
GN=murE PE=3 SV=1
Length = 514

Score = 30.4 bits (67), Expect = 6.8
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +2

Query: 323 PNVVTLVRHLGPKVHKSCTEWVQHSLSLQRYKGWAMSTVIYGIGSVEATISSQISIHDAV 502
P+ + ++ G SC++W+ +LS Q + + T+ G G V+A +++ + DA+
Sbjct: 115 PDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGTL--GTGFVDALVATGFTTPDAI 172

Query: 503 APPSVRTGSYRVAPRMLA 556
+R R +A
Sbjct: 173 QLQHSLADLHRAGARAVA 190


tr_hit_id A9SVR8
Definition tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 38.9
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954350|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_D09, 5'
(587 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.22
tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family OS... 37 1.1
tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus G... 37 1.1
tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae GN... 37 1.1
tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4
tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic OS=Pros... 35 4.1
tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medic... 34 5.3

>tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84628 PE=4 SV=1
Length = 369

Score = 38.9 bits (89), Expect = 0.22
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +2

Query: 458 VEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 583
V A +SS + DA A P VR Y++AP L KAR++++R
Sbjct: 106 VVAAVSSGAPVQDATAAPPVRRNCYQLAPSTLTLKARKSRKR 147


>tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family
OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
44196) GN=MAB_0937c PE=4 SV=1
Length = 1002

Score = 36.6 bits (83), Expect = 1.1
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -2

Query: 451 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 275
N+ D +R AFI+ G ++ Y T+L F P+ +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 274 KSSVRSPT 251
S PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus
GN=mmpL PE=4 SV=1
Length = 1002

Score = 36.6 bits (83), Expect = 1.1
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -2

Query: 451 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 275
N+ D +R AFI+ G ++ Y T+L F P+ +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 274 KSSVRSPT 251
S PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae
GN=mmpL PE=4 SV=1
Length = 1006

Score = 36.6 bits (83), Expect = 1.1
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -2

Query: 451 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 275
N+ D +R AFI+ G ++ Y T+L F P+ +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 274 KSSVRSPT 251
S PT
Sbjct: 798 ISMGGFPT 805


>tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012018 PE=4 SV=1
Length = 347

Score = 35.4 bits (80), Expect = 2.4
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2

Query: 470 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRRS 586
IS+ I DA+APP VR+ S + A R + RRT+RRS
Sbjct: 86 ISAMIFPVDALAPPPVRSNSCKTARRTSLRRKRRTRRRS 124


>tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=Cvib_0782 PE=3 SV=1
Length = 503

Score = 34.7 bits (78), Expect = 4.1
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2

Query: 392 HSLSLQRYKGW---AMSTVIYGIGSVEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYK 562
H L L ++ A+ T +Y S+ SS ++ ++V P S+R VAPR+L+YK
Sbjct: 341 HELRLPKHHATSFAAVETRLYDALSIPVPDSSAVA--ESVTPDSIRVSFVAVAPRLLSYK 398

Query: 563 ARR 571
+R
Sbjct: 399 VKR 401


>tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 179

Score = 34.3 bits (77), Expect = 5.3
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2

Query: 470 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 583
IS+ I DAVAPP V+ + R+ R L + RRT+R+
Sbjct: 34 ISAMIHPCDAVAPPPVKPSTRRIPRRTLTRRKRRTRRK 71