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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954422
Clone id TST39A01NGRL0020_G09
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_G09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTTGTCATGAGGGCAGTGTCTGCAGGTCGCGTCTTGTCTGGTGAGCTTTTGTGGTGGGA
GCTGTTGGTCGACGCTTCGGAATGCTGTGCTAGTCGTTTGAAGAAGAGCTTTTGGGGATC
GGGAACAGGCGCAATGAAGAACATTGCAGTGCAACGTAGACAGGCTCAGGCAGTCTGTCT
CCTAGATAGTACCATGTGGAGCATGGGCAAGGAAGCATATGCTGCCCTTGTCCTAAACAT
GAAGAAGCTGTTATTGGAGGCTAGATGTACCTACGGACCTGTTTCTGCTAGCACAGGGGA
ATGCTGCAGCACCTTTTCTGATTTTTTTTCAAGAGGCGTTGCAGGGAGAAGTCAAATTTC
GTCACCTTTTCACAAGTTGATGTCCTTGGATGCCTTACCTAGTGATGGGTTTTCTGCAAT
GAAACTCCTTAAGAAAATGCAGCAGAGCTGTGGTACAACCTTCTGCAGTGTCTCTTCCCA
TGGGTTTGCCAGAGAAGAACAGGAAACGTTTATGACAAGGGTTTACACAGATATCTACCA
GGGGCCTGGAACTGACGC
■■Homology search results ■■ -
sp_hit_id Q9KUM8
Definition sp|Q9KUM8|GLMS_VIBCH Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Vibrio cholerae
Align length 45
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954422|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G09, 5'
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KUM8|GLMS_VIBCH Glucosamine--fructose-6-phosphate aminotran...    32   1.6  
sp|Q6LLH3|GLMS_PHOPR Glucosamine--fructose-6-phosphate aminotran...    32   2.1  
sp|Q5QZH5|GLMS_IDILO Glucosamine--fructose-6-phosphate aminotran...    32   2.1  
sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protei...    32   2.7  
sp|Q5E279|GLMS_VIBF1 Glucosamine--fructose-6-phosphate aminotran...    31   4.7  
sp|Q7MP62|GLMS_VIBVY Glucosamine--fructose-6-phosphate aminotran...    30   6.1  
sp|Q8DEF3|GLMS_VIBVU Glucosamine--fructose-6-phosphate aminotran...    30   6.1  
sp|Q87SR3|GLMS_VIBPA Glucosamine--fructose-6-phosphate aminotran...    30   6.1  
sp|Q7VKK4|GLMS_HAEDU Glucosamine--fructose-6-phosphate aminotran...    30   6.1  
sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2 OS=Caenorha...    30   8.0  
sp|P44708|GLMS_HAEIN Glucosamine--fructose-6-phosphate aminotran...    30   8.0  
sp|Q8FR00|SYM_COREF Methionyl-tRNA synthetase OS=Corynebacterium...    30   8.1  
sp|Q96NE9|FRMD6_HUMAN FERM domain-containing protein 6 OS=Homo s...    30   8.1  

>sp|Q9KUM8|GLMS_VIBCH Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Vibrio cholerae
           GN=glmS PE=3 SV=3
          Length = 610

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR  T+I
Sbjct: 354 ADTLAALRLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGTEI 398


>sp|Q6LLH3|GLMS_PHOPR Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Photobacterium
           profundum GN=glmS PE=3 SV=3
          Length = 610

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR  T+I
Sbjct: 354 ADTLAALRLAKEKGYMSAMTICNVAGSSLVRESDLAFMTRAGTEI 398


>sp|Q5QZH5|GLMS_IDILO Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Idiomarina loihiensis
           GN=glmS PE=3 SV=3
          Length = 610

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L KK+      T C+V S    RE    F+TR   +I
Sbjct: 355 ADTLAALRLSKKLGYKGSLTICNVGSSSMVRESDLAFLTRAGAEI 399


>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3
          Length = 1050

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +2

Query: 356 ISSPFHKLMSLDALPSDGFSAM-------KLLKKMQQSCGTTFCSVSS 478
           +S+PFH++MSL  LPSD    +       K  +  Q +CGT +    S
Sbjct: 618 VSTPFHEIMSLKDLPSDPERLLPEEDLDVKTSEDQQTACGTIYSQTLS 665


>sp|Q5E279|GLMS_VIBF1 Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Vibrio fischeri
           (strain ATCC 700601 / ES114) GN=glmS PE=3 SV=3
          Length = 610

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR  T+I
Sbjct: 354 ADTLAALRLAKERGYMGAMTVCNVAGSSLVRESDFAFMTRAGTEI 398


>sp|Q7MP62|GLMS_VIBVY Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Vibrio vulnificus
           (strain YJ016) GN=glmS PE=3 SV=3
          Length = 610

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR   +I
Sbjct: 354 ADTLAALRLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGVEI 398


>sp|Q8DEF3|GLMS_VIBVU Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Vibrio vulnificus
           GN=glmS PE=3 SV=3
          Length = 610

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR   +I
Sbjct: 354 ADTLAALRLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGVEI 398


>sp|Q87SR3|GLMS_VIBPA Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Vibrio
           parahaemolyticus GN=glmS PE=3 SV=2
          Length = 610

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+     RE    FMTR   +I
Sbjct: 354 ADTLAALRLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGVEI 398


>sp|Q7VKK4|GLMS_HAEDU Glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing] OS=Haemophilus ducreyi
           GN=glmS PE=3 SV=3
          Length = 610

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 401 SDGFSAMKLLKKMQQSCGTTFCSVSSHGFAREEQETFMTRVYTDI 535
           +D  +A++L K+       T C+V+S    RE    FMT+   +I
Sbjct: 354 ADTLAALRLAKQSGYMAAMTICNVASSSLVRESDFAFMTKAGIEI 398


>sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2
           OS=Caenorhabditis elegans GN=K04H4.2 PE=1 SV=6
          Length = 1446

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = -3

Query: 226 GSICFL-AHAPHGTI*ETDCLSLSTL-HC----------NVLHCACSRSPKALLQTTSTA 83
           G  C L  H P GT+ ET C S S   HC          N  H AC  SP  +++ + TA
Sbjct: 583 GKCCKLNIHCPDGTVPETSCQSASNHDHCPSSSHKCTLLNKEHFACCYSPGLVVEGSVTA 642
tr_hit_id A9TBV0
Definition tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 35.0
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954422|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G09, 5'
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.7  
tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide...    34   4.6  
tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein OS=Asper...    34   4.6  

>tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90719 PE=4 SV=1
          Length = 177

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2

Query: 197 TWYYLGDRLPEPVYVALQCSSLRLFPIPKSSSSN 96
           TW  L  RLP  V V+LQC +LR F   K S +N
Sbjct: 33  TWLCLQRRLPRTVAVSLQCPALRFFGSKKESEAN 66


>tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide
           ATP-binding protein OS=Psychromonas ingrahamii (strain
           37) GN=Ping_0292 PE=3 SV=1
          Length = 530

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +2

Query: 5   VMRAVSAGRVLSGELLWWELLVDASECCASR-LKKSFWGSGT---GAMKNIAVQRRQAQA 172
           ++ A  AG +   EL   +L++ A+    S  LKK+FWG  T    A+KN+++Q  Q++ 
Sbjct: 254 LLNAEPAGEMT--ELTAPQLILSAANINVSYPLKKNFWGKTTRSLQAVKNVSLQIHQSET 311

Query: 173 VCLLDSTMWSMGKEAYAALVLNMKK 247
           V ++  +    GK   A  +L + K
Sbjct: 312 VAIVGES--GSGKSTLAQAILQLNK 334


>tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_06359
           PE=4 SV=1
          Length = 1064

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 206 PCSTWYYLGDRLPEPVYVALQC-SSLRLFP-IPKSSSSND*HSIPKRRPTAPTTKAHQT 36
           PCS+WY+    L  P+  +L   S++   P +P SS S+  + IP    + PTT +  T
Sbjct: 78  PCSSWYFFSSPLLLPISASLPLFSAMTNSPFLPSSSPSSQRNDIPTMADSTPTTTSTLT 136