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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954429
Clone id TST39A01NGRL0020_G16
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_G16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTTTT
GCAAGTATAAATTCACATGCTCTCTGCACGCTCCTTTCAAGGAAACTAGACTAGCCGGAA
GCGCTGCAGGTGAAGGTAAGCATTCTGATCCGCATGTTTTAGATCCGTAGAGATGAAGCT
GCCGAGGGGAATTTGCTATTGTAGATGTTTGTTAGGGATTGTGATGCCCTTGTTCTTTAG
ATCTTCGTGTTGCATTTGCACATCTGCCGACGGTCCAAGAGAGGGAAGAGGGCTGTCTTC
ATGCTTAATGCCAAATATCATCCCCCCTCTTCCATGTGCCCCTGCCTGTGTACAAGCATG
ATGAAAGCACACATTTAATATGATCCTTTGCCTGAAATTGGCCCCATAATTTTGAACCCT
GTGCTCGTTTGTGGAGATGTCCTCAACTCCTCGTACATCCTTTCATGCTTGTGGCGGAAA
TTTTTCTCCAAG
■■Homology search results ■■ -
sp_hit_id Q8WWC4
Definition sp|Q8WWC4|CB047_HUMAN Uncharacterized protein C2orf47, mitochondrial OS=Homo sapiens
Align length 64
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954429|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G16, 5'
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8WWC4|CB047_HUMAN Uncharacterized protein C2orf47, mitochond...    32   1.2  
sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=...    31   2.7  
sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo sap...    30   7.8  

>sp|Q8WWC4|CB047_HUMAN Uncharacterized protein C2orf47,
           mitochondrial OS=Homo sapiens GN=C2orf47 PE=1 SV=1
          Length = 291

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 170 EMKLPRG-ICY-CRCLLGIVMPLFFRSSCCICTSADGPREGRGLSSCLMPNIIPPLPCAP 343
           E++LP   +CY CRC LG+   LF RS+  +  SA  P +G        P +       P
Sbjct: 31  EVRLPSATLCYFCRCRLGLGAALFPRSARALAASA-LPAQGSRWPVLSSPGLPAAFASFP 89

Query: 344 ACVQ 355
           AC Q
Sbjct: 90  ACPQ 93


>sp|Q9WUH5|TRI10_MOUSE Tripartite motif-containing protein 10 OS=Mus
           musculus GN=Trim10 PE=2 SV=2
          Length = 489

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -3

Query: 433 HKRAQGSKLWGQF----QAKDHIKCVLSSCLYT-GRGTWKRGDDIWH*A*RQPSSLSWTV 269
           H+RA+ S  W       Q  D + CVL+ C +T GR TW    D+ H         S TV
Sbjct: 329 HRRARFSYKWQNSPDTPQRFDRVTCVLAQCGFTGGRHTWMVNVDLAH-------GGSCTV 381

Query: 268 GRCANATRRSKE 233
           G      RR  E
Sbjct: 382 GVVREDVRRKGE 393


>sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo
           sapiens GN=KRTAP4-3 PE=2 SV=2
          Length = 195

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +2

Query: 206 CLLGIVMPLFFRSSCC--ICTSADGPREGRGLSSCLMPNIIPPLPCAPAC 349
           C+     P    SSCC   C      R    +SSC  P    P  C PAC
Sbjct: 105 CISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRPQCCQPSCCRPAC 154
tr_hit_id Q2QZP1
Definition tr|Q2QZP1|Q2QZP1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 33
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954429|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_G16, 5'
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QZP1|Q2QZP1_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|A3CDW4|A3CDW4_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q08NZ7|Q08NZ7_STIAU Putative uncharacterized protein OS=Stigm...    33   7.3  
tr|A9HLU1|A9HLU1_9RHOB Putative uncharacterized protein OS=Roseo...    33   9.5  
tr|B4R0U4|B4R0U4_DROSI GD17615 OS=Drosophila simulans GN=GD17615...    33   9.5  

>tr|Q2QZP1|Q2QZP1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os11g45320 PE=4 SV=1
          Length = 228

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 251 CICTSADGPREGRGLSSCLMPNIIPPLPCAPAC 349
           C  TSADG   G+G  +C     +P  PC P C
Sbjct: 128 CTITSADGSEVGKGRMACRNGRTMPDHPCLPHC 160


>tr|A3CDW4|A3CDW4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033486 PE=4 SV=1
          Length = 289

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 251 CICTSADGPREGRGLSSCLMPNIIPPLPCAPAC 349
           C  TSADG   G+G  +C     +P  PC P C
Sbjct: 189 CTITSADGSEVGKGRMACRNGRTMPDHPCLPHC 221


>tr|Q08NZ7|Q08NZ7_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_3623 PE=4
           SV=1
          Length = 387

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 366 FHHACTQAGAHGRGGMIF-GIKHEDSPLPSLGPS 268
           FH ACT A A GRGG +   ++ E + LP+ GP+
Sbjct: 181 FHLACTDAQATGRGGGVSPSVREEAARLPATGPA 214


>tr|A9HLU1|A9HLU1_9RHOB Putative uncharacterized protein
           OS=Roseobacter litoralis Och 149 GN=RLO149_14813 PE=4
           SV=1
          Length = 255

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 402 ANFRQRIILNVCF----HHACTQAGAHGRGGMIFGIKHEDSP 289
           A F Q +I   CF     +AC QAG HG   +I  + H D+P
Sbjct: 106 AGFAQGVIAENCFVEALEYACEQAGPHGINILIEPLNHYDAP 147


>tr|B4R0U4|B4R0U4_DROSI GD17615 OS=Drosophila simulans GN=GD17615
           PE=4 SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 306 KHEDSPLPSLGPSADVQMQHEDLKNKGITIPNKHLQ*QIPLGSFISTD 163
           K    P   + PSA V  Q  +L NKGI    KHLQ     G F+  D
Sbjct: 342 KENVEPADKMDPSAWVLPQGAELSNKGILFIQKHLQKPTSKGRFLFRD 389