DK954448
Clone id TST39A01NGRL0020_H12
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_H12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGTGGGAGAGAGAGAGAGAGAGATGGCTTCC
AGTAAGGGCATAGTCGCACTGTTCCTGGTGCTCATGGTCTCTTTGGCCGGACTGATGGGT
GCCGCCGCGCAGCCTCCTCCTCCGGCTCTGCAGTGCACTCCCCTGCTAAACCTTGTGCCG
GCTTGCCAGGCTTTAACTCTCTTCCCCGCCCTTGCCCCAGTGCTCACCTCCGTCTGCTGC
AACGCTCTCTCCACCGCCAACCTCCTGGGCGTAGGACTGGGTCCCAACGCCATCTGCCTC
TGCGTGAAGCTCACCTTGCCCAACCTATCGCTCACCACCTGCCCTGGCCTCAGCATCGAC
CTCGCCCGCATCATCTTCGGCTCCAACGGAAGCTGCGTCTGATCTCCTACATCGTCAGCC
TGCAGCAGCTTCATGCAGTTCTGTTCATGTCTTGTTGTATTTCTGTATGCGGATTTTATG
TTCTCCGCCATGCTAGCTCGTTTCTGTACTACCTTGTAGATTTGGATTGATGCTTTGTTC
TCTGGCCCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8K3T3
Definition sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax judaei
Align length 38
Score (bit) 32.0
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954448|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_H12, 5'
(548 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spala... 32 2.0
sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis ... 32 2.6
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2 31 3.4
sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo ... 30 7.7

>sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax
judaei GN=PER1 PE=2 SV=1
Length = 1285

Score = 32.0 bits (71), Expect = 2.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3

Query: 309 LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 196
L +E DG+G + E GGGE GG G+GGEE+
Sbjct: 1212 LFSELDGLGLEP--MEEGGGEGGGGGGGGGEGEGGEEA 1247


>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis
thaliana GN=TCP14 PE=2 SV=1
Length = 489

Score = 31.6 bits (70), Expect = 2.6
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Frame = -3

Query: 273 YAQEVGGGESVAADGGEHWGK--------GGEES*SLASRHKV*QGSALQSRRRRLRGGT 118
Y V G S A G H+ G++ + S H++ + S R GG
Sbjct: 381 YRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGD 440

Query: 117 HQSGQRDHEHQEQ 79
H + QR H HQ+Q
Sbjct: 441 HHNTQRHHHHQQQ 453


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
Length = 2362

Score = 31.2 bits (69), Expect = 3.4
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3

Query: 276 SYAQEVGGGESVAADGGEHWGKGGEES*S----LASRHKV*QGSALQSRRRRLRGGTHQS 109
S +Q+ GGG + GEH G S S SRH G R + G H S
Sbjct: 577 SGSQQHGGGSGQSTGFGEHESSSGHSSSSGQHRSGSRHSSGSGKHESGRSQSSGSGHHGS 636

Query: 108 GQRDH 94
G + H
Sbjct: 637 GSQQH 641


>sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo
sapiens GN=PER1 PE=1 SV=2
Length = 1290

Score = 30.0 bits (66), Expect = 7.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3

Query: 309 LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 196
L +E DG+G + E GGGE ++ GG G+G EE+
Sbjct: 1219 LFSELDGLGLEP--MEEGGGEQGSSGGGSGEGEGCEEA 1254


tr_hit_id Q0F377
Definition tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
Align length 66
Score (bit) 35.4
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954448|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_H12, 5'
(548 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1 G... 35 2.0
tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkh... 35 3.4
tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase... 34 5.8
tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative O... 34 5.8
tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria... 33 7.5
tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea m... 33 7.5
tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes scap... 33 7.5
tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein OS=Magna... 33 7.5
tr|Q5NXI6|Q5NXI6_AZOSE Putative uncharacterized protein OS=Azoar... 33 9.8
tr|B0WTH2|B0WTH2_CULQU Putative uncharacterized protein OS=Culex... 33 9.8
tr|A4RJF9|A4RJF9_MAGGR Putative uncharacterized protein OS=Magna... 33 9.8

>tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
GN=SPV1_04568 PE=4 SV=1
Length = 974

Score = 35.4 bits (80), Expect = 2.0
Identities = 22/66 (33%), Positives = 28/66 (42%)
Frame = -1

Query: 425 LQADDVGDQTQLPLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVER 246
+ D GD E +M A L PG VSD G V QR+ L PS P V++
Sbjct: 790 MDIDIDGDGRVAGWEAEMQEATGTLEPGHRVSDPTGTVDHKQREADLDPSKQPALPHVDQ 849

Query: 245 ALQQTE 228
+ E
Sbjct: 850 KISDAE 855


>tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein
OS=Burkholderia pseudomallei (strain 1710b)
GN=BURPS1710b_1933 PE=4 SV=1
Length = 1038

Score = 34.7 bits (78), Expect = 3.4
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -3

Query: 267 QEVGGGESVAADGGEHWGK-----GGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSGQ 103
+ G G A DG E G+ GG + RH+ G RRR G ++G
Sbjct: 582 ERAGDGRHEAGDGRERAGRARRAAGGAGECAGDRRHEARDGRERARRRRAAGGAGERAGD 641

Query: 102 RDHEHQEQCD 73
R H+ +E+C+
Sbjct: 642 RRHDVRERCE 651


>tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=Lcho_4311 PE=4 SV=1
Length = 408

Score = 33.9 bits (76), Expect = 5.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1

Query: 389 PLEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQQTE 228
P+ M+RA + PG VV R G+++ R+ A GP+P ++ R + E
Sbjct: 299 PIATAMLRAIGIFPPGDVVQLRSGEIAVVTRRAAKGPAPLAASVSNARGVPVLE 352


>tr|B7P201|B7P201_IXOSC Ran GTPase-activating protein, putative
OS=Ixodes scapularis GN=IscW_ISCW016093 PE=4 SV=1
Length = 527

Score = 33.9 bits (76), Expect = 5.8
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1

Query: 208 ALAPVLTSVCCNALSTANLLGVGLGPNAICLCVKLTLPNLSLTTCPGLSIDLARIIFGSN 387
AL P+L+S CC L T L GLGP L K L+ + G + L ++ G N
Sbjct: 132 ALVPLLSSPCCFQLKTLLLNNNGLGPGGAELLAKALGACLAESRKAGTPLQLRTLVCGRN 191


>tr|B2GI14|B2GI14_KOCRD Two-component histidine kinase OS=Kocuria
rhizophila (strain ATCC 9341 / DSM 348 / NBRC 12708 /
DC2201) GN=KRH_21790 PE=4 SV=1
Length = 400

Score = 33.5 bits (75), Expect = 7.5
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1

Query: 181 ACQALTLFPALAPVLTSVCCNALSTANLLGVGLGPNAICL----CVKLTLPNLSLT 336
AC F + PV T+ C ALS LL + + P +CL CV T LS T
Sbjct: 49 ACWIPLFFRRVNPVATAYCVGALSLLGLLVLNVAPIGLCLWAVPCVVYTAAKLSPT 104


>tr|B4FTS4|B4FTS4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 251

Score = 33.5 bits (75), Expect = 7.5
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -3

Query: 309 LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES*SLASRHKV*QGSALQSRRRRL 130
++ DG GT GGG S +A G GG +S S +SRRRR+
Sbjct: 184 VYVTTDGNGTTDAGDADGGGGSPSAGSGSSGSSGGSKS-----------TSGAESRRRRM 232

Query: 129 RGG 121
GG
Sbjct: 233 TGG 235


>tr|B7PKX0|B7PKX0_IXOSC Secreted protein, putative OS=Ixodes
scapularis GN=IscW_ISCW005695 PE=4 SV=1
Length = 235

Score = 33.5 bits (75), Expect = 7.5
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 13/49 (26%)
Frame = +1

Query: 268 GVGLGPNAICLCVKLTLPNL---------SLTTCP----GLSIDLARII 375
G+ + P+A C+ +TLPN+ +L TCP GL +DLARI+
Sbjct: 14 GLLISPSANAKCINVTLPNVLNLGSCLGPTLVTCPDTSDGLLVDLARIL 62


>tr|A4QVP0|A4QVP0_MAGGR Putative uncharacterized protein
OS=Magnaporthe grisea GN=MGG_04405 PE=4 SV=1
Length = 654

Score = 33.5 bits (75), Expect = 7.5
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = -1

Query: 485 ENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLP-LEPKMMRARSMLRPGQVVSDRLGKVS 309
EN++ R ++R +Q + A + D P L +A S + G+ S K
Sbjct: 316 ENLRPRSRPSSRQQQRKEPVQTAPSLDDAEAFPSLGAASAKATSKKQHGKRSSQGHHKEG 375

Query: 308 FTQRQMA----LGPSPTPRRLAVERALQQTEVSTGARAGKRVKAWQA 180
+A + PSPTP V R + +T ST R G+ A Q+
Sbjct: 376 LISSSLADIVKMSPSPTPEAKLVSRKMGRTVSSTSIRNGENSAAAQS 422


>tr|Q5NXI6|Q5NXI6_AZOSE Putative uncharacterized protein OS=Azoarcus
sp. (strain EbN1) GN=AZOSEA41030 PE=4 SV=1
Length = 692

Score = 33.1 bits (74), Expect = 9.8
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -1

Query: 281 PSPT-PRRLAVERALQQTEVSTGARAGKRVKAWQAGTRFSRGVHCRXXXXXXXXAPISPA 105
P+PT P AV +Q ++ T G R AW +RG+ R P+ PA
Sbjct: 123 PAPTLPALAAVAEGVQDLDLITDVGPGLRAPAWPHTPPAARGLVAR-------QQPMQPA 175

Query: 104 KETMSTRNSATMPLLEA 54
+ M R + PL A
Sbjct: 176 RTPMRARQQSAAPLATA 192


>tr|B0WTH2|B0WTH2_CULQU Putative uncharacterized protein OS=Culex
quinquefasciatus GN=CpipJ_CPIJ010148 PE=4 SV=1
Length = 1133

Score = 33.1 bits (74), Expect = 9.8
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = -3

Query: 285 GTQSYAQEVGGGESVAADGGEHWGKGGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSG 106
G Y EVGGG V+ DG E G GG S + S + L+ R ++ S
Sbjct: 233 GLDEYGFEVGGGARVSRDGLERTGSGGSGSHAKLSMSEARNEEVLR-RVAEMQKMVESSE 291

Query: 105 QRDHEHQEQC 76
+ +EH E C
Sbjct: 292 RYLNEHGEYC 301