DK954457 |
Clone id |
TST39A01NGRL0020_H21 |
Library |
TST39 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_H21. 5' end sequence. |
Accession |
DK954457 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL307Contig1 |
Sequence |
CTCTCTTGCACCATGGCCAAGGATCCCGTCCGCGTTCTTGTCACAGGAGCTGCAGGGCAA ATTGGATATGCCCTAGTTCCAATGATAGCGAGGGGAGTGATGTTGGGACCGGACCAGCCC ATTATCTTGCACATGCTGGATATTCCTCCAGCTGCTGAGGCTTTGAATGGTGTCAAGATG GAGCTTGTCGATGCAGCATTCCCTCTCCTTAAGGGTGTTGTTGCCACCACTGATGTCGTG GAGGCTTGCAAGGGTGTGAACATTGCAATCATGGTTGGGGGCTTTCCTCGTAAAGAGGGC ATGGAGAGGAAGGATGTCATGTCGAAGAATGTGTCCATATACAAGTCGCAAGCATCAGCA TTGGAAGAACATGCAGCAAAAGACTTGAAGGTTTTAGTAGTTGCCAATCCTGCAAACACC AACGCCCTCATTTTGAAGGAATTCGCACCTTCTATACCTGAGAAGAACATTACGTGTCTC ACAAGGCTTGACCACAATCGGGCATTGGGCCAGATTGCAGAACGACTGGGAGCGCAGGTG TC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48905 |
Definition |
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa |
Align length |
176 |
Score (bit) |
319.0 |
E-value |
5.0e-87 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954457|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_H21, 5' (542 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medica... 319 5e-87 sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea ma... 319 6e-87 sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza ... 314 2e-85 sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta v... 314 2e-85 sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Ara... 312 6e-85 sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Ara... 312 6e-85 sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesemb... 312 8e-85 sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium viol... 199 6e-51 sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echino... 197 2e-50 sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyost... 195 1e-49 sp|Q46YU4|MDH_RALEJ Malate dehydrogenase OS=Ralstonia eutropha (... 195 1e-49 sp|Q0K8F5|MDH_RALEH Malate dehydrogenase OS=Ralstonia eutropha (... 195 1e-49 sp|P40925|MDHC_HUMAN Malate dehydrogenase, cytoplasmic OS=Homo s... 195 1e-49 sp|O88989|MDHC_RAT Malate dehydrogenase, cytoplasmic OS=Rattus n... 194 2e-49 sp|P14152|MDHC_MOUSE Malate dehydrogenase, cytoplasmic OS=Mus mu... 194 2e-49 sp|Q1LKG0|MDH_RALME Malate dehydrogenase OS=Ralstonia metallidur... 192 7e-49 sp|Q5ZME2|MDHC_CHICK Malate dehydrogenase, cytoplasmic OS=Gallus... 192 7e-49 sp|Q6DIY9|MDHC_XENTR Malate dehydrogenase, cytoplasmic OS=Xenopu... 192 1e-48 sp|P11708|MDHC_PIG Malate dehydrogenase, cytoplasmic OS=Sus scro... 192 1e-48 sp|Q7YRU4|MDHC_FELCA Malate dehydrogenase, cytoplasmic OS=Felis ... 192 1e-48 sp|Q3T145|MDHC_BOVIN Malate dehydrogenase, cytoplasmic OS=Bos ta... 192 1e-48 sp|Q0ABE6|MDH_ALHEH Malate dehydrogenase OS=Alkalilimnicola ehrl... 191 3e-48 sp|A4JM71|MDH2_BURVG Malate dehydrogenase 2 OS=Burkholderia viet... 190 3e-48 sp|Q393V1|MDH_BURS3 Malate dehydrogenase OS=Burkholderia sp. (st... 189 6e-48 sp|P80536|MDH_BURPS Malate dehydrogenase OS=Burkholderia pseudom... 189 6e-48 sp|A3NM97|MDH_BURP6 Malate dehydrogenase OS=Burkholderia pseudom... 189 6e-48 sp|Q3JKE9|MDH_BURP1 Malate dehydrogenase OS=Burkholderia pseudom... 189 6e-48 sp|A3P7Q9|MDH_BURP0 Malate dehydrogenase OS=Burkholderia pseudom... 189 6e-48 sp|A1UZ10|MDH_BURMS Malate dehydrogenase OS=Burkholderia mallei ... 189 6e-48 sp|Q62AG8|MDH_BURMA Malate dehydrogenase OS=Burkholderia mallei ... 189 6e-48
>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1 Length = 332
Score = 319 bits (818), Expect = 5e-87 Identities = 162/176 (92%), Positives = 170/176 (96%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQP+ILHMLDI PAAE+LNGVKMELVD Sbjct: 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTDVVEAC GVNIA+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPE+NI+CLTRLDHNRALGQI+ERL QV Sbjct: 121 AAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQV 176
>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2 Length = 332
Score = 319 bits (817), Expect = 6e-87 Identities = 161/176 (91%), Positives = 169/176 (96%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKN+TCLTRLDHNRALGQI+ERL QV Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQV 176
>sp|Q7XDC8|MDHC_ORYSJ Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3 Length = 332
Score = 314 bits (804), Expect = 2e-85 Identities = 157/176 (89%), Positives = 168/176 (95%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MAK+P+RVLVTGAAGQIGYALVPMIARGVMLG DQP+ILHMLDIPPA E+LNG+KMELVD Sbjct: 1 MAKEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKG+VATTDVVEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE H Sbjct: 61 AAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQI+E+L QV Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQV 176
>sp|Q9SML8|MDHC_BETVU Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1 Length = 332
Score = 314 bits (804), Expect = 2e-85 Identities = 159/176 (90%), Positives = 169/176 (96%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MA +P+RVLVTGAAGQIGYALVPMIARGVMLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTDV EACKGVN+A+MVGGFPRKEGMERKDVM KNVSIYKSQASALE++ Sbjct: 61 AAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQY 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQI+ERL AQV Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQV 176
>sp|P57106|MDHC2_ARATH Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1 Length = 332
Score = 312 bits (800), Expect = 6e-85 Identities = 158/176 (89%), Positives = 167/176 (94%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIP AAEALNGVKMELVD Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTD VEAC GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQASALE+H Sbjct: 61 AAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQ++ERL V Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPV 176
>sp|P93819|MDHC1_ARATH Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2 Length = 332
Score = 312 bits (800), Expect = 6e-85 Identities = 156/176 (88%), Positives = 167/176 (94%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MAK+PVRVLVTGAAGQIGYALVPMIARG+MLG DQP+ILHMLDIPPAAEALNGVKMEL+D Sbjct: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELID 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTD VE C GVN+A+MVGGFPRKEGMERKDVMSKNVSIYKSQA+ALE+H Sbjct: 61 AAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKNI+CLTRLDHNRALGQI+ERL V Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPV 176
>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1 Length = 332
Score = 312 bits (799), Expect = 8e-85 Identities = 156/176 (88%), Positives = 168/176 (95%) Frame = +1
Query: 13 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVD 192 MA +P+RVLVTGAAGQIGYALVPMIARG+MLG +QP+ILHMLDIPPAAEALNGVKMELVD Sbjct: 1 MAVEPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVD 60
Query: 193 AAFPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEH 372 AAFPLLKGVVATTD EACKGVN+A+MVGGFPRKEGMERKDVMSKNVSIYK+QASALE+H Sbjct: 61 AAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
Query: 373 AAKDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 AA + KVLVVANPANTNALILKEFAPSIPEKNI+CLTRLDHNRALGQI+ERL QV Sbjct: 121 AAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQV 176
>sp|Q7NZ60|MDH_CHRVO Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1 Length = 326
Score = 199 bits (507), Expect = 6e-51 Identities = 104/174 (59%), Positives = 125/174 (71%) Frame = +1
Query: 19 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAA 198 K PVRV VTGAAGQIGY+L+ IA G MLG DQP+ILH+LD+P A AL GV MEL D A Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCA 61
Query: 199 FPLLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAA 378 FPLL G+VAT D A K V +A++VG PR +GMERKD++ N +I+ Q AL +HAA Sbjct: 62 FPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAA 121
Query: 379 KDLKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 +D+KVLVV NPANTNA I + AP + KN T + RLDHNRAL QIA + G V Sbjct: 122 RDVKVLVVGNPANTNAWIAMKSAPDLDPKNFTAMLRLDHNRALSQIAAKTGKPV 175
>sp|Q04820|MDHC_ECHGR Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2 Length = 332
Score = 197 bits (502), Expect = 2e-50 Identities = 97/169 (57%), Positives = 127/169 (75%) Frame = +1
Query: 25 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAAFP 204 P+RVL+TGAAGQI Y L M+A G + G DQ IILH+LDIP A L+GV MEL D AF Sbjct: 4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFT 63
Query: 205 LLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAAKD 384 +L G+V T + EA +++A+MVG PRK+GMER+D++S NV I+K Q AL+++A K Sbjct: 64 VLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKT 123
Query: 385 LKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLG 531 +KVLVV NPANTN LI+ ++APSIP++N T LTRLDHNRA+ Q+A + G Sbjct: 124 VKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAG 172
>sp|Q54GE6|MDHA_DICDI Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1 Length = 391
Score = 195 bits (496), Expect = 1e-49 Identities = 98/172 (56%), Positives = 126/172 (73%) Frame = +1
Query: 25 PVRVLVTGAAGQIGYALVPMIARGVMLGPDQPIILHMLDIPPAAEALNGVKMELVDAAFP 204 P++VLVTGAAGQI Y+L+ MIA G M GP QP+ILH+LDIP A+AL GV MEL D ++P Sbjct: 61 PIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHLLDIPKMADALKGVVMELQDCSYP 120
Query: 205 LLKGVVATTDVVEACKGVNIAIMVGGFPRKEGMERKDVMSKNVSIYKSQASALEEHAAKD 384 LL+ VVATTD+ A +N+AI+VG FPR GM+RKD++ NVSI+K Q AL ++A++ Sbjct: 121 LLQSVVATTDIQTAFLHINVAILVGAFPRGPGMQRKDLLKVNVSIFKEQGEALNKYASRG 180
Query: 385 LKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQIAERLGAQV 540 +KVLVV NPANTNAL A +P N + LTRLD NRA I+E++G V Sbjct: 181 VKVLVVGNPANTNALTALMKASDLPTSNFSALTRLDQNRAQSMISEKVGTNV 232
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FT00 |
Definition |
tr|Q9FT00|Q9FT00_CICAR Malate dehydrogenase OS=Cicer arietinum |
Align length |
176 |
Score (bit) |
324.0 |
E-value |
2.0e-87 |
Report |
|