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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954462
Clone id TST39A01NGRL0020_I02
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_I02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGTTTTAGCTTCCTGTATGTGCGTGCTCTCTCTGTTTATTACTGGGCTTTAGCTTCTTGA
ATGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTAGGGGTCTTCCTG
CATGCCCATTTTCTTTTCGATCGCTGTTATCTTCTCAACATTTTTGCACGATCTGATCCT
GTTGATTCGTCTTTCAGCTCAACTTGTGTCCTCTCCAACTCCTACTTTCATCTTTCCTTC
CGGCATGGCTGCCTCCGCCACATGCAGCGTCCCCATCAGAATGATTGGCATGCCTTGTGC
TAAATATCAAAGAAATCTCCAGTCCCAGAATGTAGTCTCGTCCTCTCGATTCACCCACAG
CCACATCATTAAGGCTGCACAGACGCAGTCCGCTCCTCGCACACGCGAAACGGAGAACGT
ATCGCTCAAGGGTGATGCAGAGGATGCTGCCTTGAAGGTATTTGCTGATGATACAAAAGG
AATTGTATGCTATCGAACAGAGTCTGGTGAAATCGTTTGTGAGGGCATGGATGAGGGCCC
TCAGTTCTATCCTCCTTCTGGGGCGAAACTCTACATGCCCGATACTCGAGCTGCTGCTAT
■■Homology search results ■■ -
sp_hit_id B1XLW1
Definition sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
Align length 61
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_I02, 5'
         (600 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658 OS=...    32   1.9  
sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapie...    31   5.5  
sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subuni...    31   5.5  
sp|A6VQ42|RNFC_ACTSZ Electron transport complex protein rnfC OS=...    30   7.1  
sp|A0L0R3|PANC_SHESA Pantothenate synthetase OS=Shewanella sp. (...    30   7.1  
sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS...    30   7.1  
sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein ...    30   7.1  
sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein ...    30   7.1  
sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamic...    30   7.1  
sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2 ...    30   9.3  
sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN...    30   9.3  

>sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=SYNPCC7002_A2658 PE=3 SV=1
          Length = 219

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 404 RETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGAKLYMPD 583
           R T+N  + G   D +  +F ++         E GE+V EG D    +  P+G  +  P 
Sbjct: 95  RHTDNALMNGMRSDVSFTLFLNEPSDY-----EGGELVIEGADSEQSYKLPAGTAIAYPS 149

Query: 584 T 586
           T
Sbjct: 150 T 150


>sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens
            GN=UHRF1BP1L PE=1 SV=2
          Length = 1464

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +2

Query: 314  NLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAAL-KVFADDTKGIVC 490
            N  S N   S   +H  +      +SA  T   + +S      D  L K+  D++ G+V 
Sbjct: 926  NHMSDNRSMSVDLSHIPLKDPLLFKSASDTNLQKGISFMDYLSDKHLGKISEDESSGLV- 984

Query: 491  YRTESGEIVCEGMDEGPQFYPPSGAKL 571
            Y++ SGEI  E  D+   FY  S + L
Sbjct: 985  YKSGSGEIGSETSDKKDSFYTDSSSIL 1011


>sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subunit
           beta OS=Spodoptera littoralis nuclear polyhedrosis virus
           GN=LEF-8 PE=3 SV=1
          Length = 909

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -3

Query: 361 AVGESRGRDYILGLEISLIFST------RHANHSDGDAACGGGSHAGRKDE 227
           AV ES GR  +L   + ++F T      R    S GDA CGGG   G +D+
Sbjct: 50  AVDESTGR-CVLHRCVLIVFGTWLDKKFRKKEFSGGDATCGGGGGDGDQDQ 99


>sp|A6VQ42|RNFC_ACTSZ Electron transport complex protein rnfC
           OS=Actinobacillus succinogenes (strain ATCC 55618 /
           130Z) GN=rnfC PE=3 SV=1
          Length = 703

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 30/100 (30%), Positives = 43/100 (43%)
 Frame = +2

Query: 299 AKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTK 478
           A+ Q N  S   VSS+  + S  I A  T S P+T + +      D + AA+ V     K
Sbjct: 554 ARQQTNGNSP--VSSASNSDSATISADNTHSTPKTAQNQTAP---DPKKAAVAVAIARAK 608

Query: 479 GIVCYRTESGEIVCEGMDEGPQFYPPSGAKLYMPDTRAAA 598
                +T +GE V E + E     P +      PD + AA
Sbjct: 609 AKKAAQTTTGETVTENVTEKTAQNPTA------PDPKKAA 642


>sp|A0L0R3|PANC_SHESA Pantothenate synthetase OS=Shewanella sp.
           (strain ANA-3) GN=panC PE=3 SV=1
          Length = 281

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 LIRLSAQLVSSPTPTFIFPSGMAASATCSVP 274
           L    A+L+ +PTPT I+P G+A      VP
Sbjct: 82  LTAAGAELLFTPTPTVIYPKGLAQQTYVEVP 112


>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein
            OS=Rattus norvegicus GN=Nalcn PE=2 SV=1
          Length = 1738

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 372  RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 545
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 546  SILLLGRNSTCPILELL 596
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein
            OS=Mus musculus GN=Nalcn PE=2 SV=2
          Length = 1738

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 372  RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 545
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 546  SILLLGRNSTCPILELL 596
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein
            OS=Homo sapiens GN=NALCN PE=1 SV=1
          Length = 1738

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 372  RLHRRSPLLAH--AKRRTYRSRVMQRMLP*RYLLMIQKELYAIEQSLVKSFVRAWMRALS 545
            RLH    +  H      +YRS  +++ L    LL  ++  Y IE+ + K  +R W++   
Sbjct: 1521 RLHNGGDVTFHDVLSMLSYRSVDIRKSLQLEELLAREQLEYTIEEEVAKQTIRMWLKKCL 1580

Query: 546  SILLLGRNSTCPILELL 596
              +   +  +C I+  L
Sbjct: 1581 KRIRAKQQQSCSIIHSL 1597


>sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamicum
           GN=pyk PE=1 SV=1
          Length = 475

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 401 TRETENVSLKGDAEDAAL--KVFADDTK-GIVCYRTESGEIVCEGMDEGP 541
           T +  + + K  A+DA    ++  DD K G+VC   E  +++CE ++ GP
Sbjct: 101 THDRVSTTYKNLAKDAKPGDRLLVDDGKVGLVCVSVEGNDVICEVVEGGP 150


>sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2
           SV=1
          Length = 423

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 593 QLEYRACRVSPQKEDRTEGPHPCPHKRFHQTLFDS 489
           +LE +AC  S Q   R EGP PCP ++   +  DS
Sbjct: 160 KLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDS 194
tr_hit_id A7P6B3
Definition tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 42
Score (bit) 55.8
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_I02, 5'
         (600 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome ...    56   2e-06
tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis...    56   2e-06
tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subs...    55   3e-06
tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella paten...    54   9e-06
tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea m...    53   2e-05
tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medic...    52   3e-05
tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    51   6e-05
tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea...    51   6e-05
tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|Q0DX03|Q0DX03_ORYSJ Os02g0782900 protein OS=Oryza sativa subs...    48   5e-04
tr|Q94HC7|Q94HC7_ORYSJ Putative uncharacterized protein OSJNBb00...    47   6e-04
tr|B8BGM6|B8BGM6_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|Q6K7E4|Q6K7E4_ORYSJ Putative uncharacterized protein OJ1311_D...    46   0.002
tr|A3AC06|A3AC06_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.1  
tr|B0WC24|B0WC24_CULQU Putative uncharacterized protein OS=Culex...    37   1.1  
tr|B8CTC7|B8CTC7_9GAMM Pantoate-beta-alanine ligase:Cytidyltrans...    34   5.6  
tr|A8H0D3|A8H0D3_SHEPA Pantoate--beta-alanine ligase OS=Shewanel...    33   9.6  
tr|A6UHC7|A6UHC7_SINMW Outer membrane autotransporter barrel dom...    33   9.6  

>tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034001001
           PE=4 SV=1
          Length = 105

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +2

Query: 455 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGAKLYMP 580
           KVF D +KGIVCYR + GEIVCEG DEGP+ +     K Y P
Sbjct: 25  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP 66


>tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043719 PE=4 SV=1
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +2

Query: 455 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGAKLYMP 580
           KVF D +KGIVCYR + GEIVCEG DEGP+ +     K Y P
Sbjct: 53  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP 94


>tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subsp.
           japonica GN=P0698A06.24 PE=2 SV=1
          Length = 127

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +2

Query: 371 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 544
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019601 PE=4 SV=1
          Length = 133

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +2

Query: 371 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 544
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21995 PE=4 SV=1
          Length = 128

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +2

Query: 371 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 544
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 24  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 81


>tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171438 PE=4 SV=1
          Length = 153

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 29/86 (33%), Positives = 43/86 (50%)
 Frame = +2

Query: 296 CAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAALKVFADDT 475
           CA    ++ S+N   S R     ++  +   S    R +  V   G   +    VF D++
Sbjct: 12  CASPPISISSRNPPPSQRLATVKMVPKSLRLSI--CRASSEVGPAGVIPEKESTVFKDES 69

Query: 476 KGIVCYRTESGEIVCEGMDEGPQFYP 553
           +GI+CY  E+G+I CEG DEGP F P
Sbjct: 70  QGIICYYDENGDITCEGWDEGPHFQP 95


>tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 130

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 290 MPCAKYQRNLQSQNVVSSSRFTHSHI-IKAAQTQSAPRTRETENVSLKGDAEDAALKVFA 466
           M C +Y  ++    +  +SR T +   I      S+   +++ +VS  G A     KV+ 
Sbjct: 6   MRCYRYSPSVAMVPMRKTSRTTMTRASISTDGCSSSEPKKKSHSVSFAGKAN----KVYE 61

Query: 467 DDTKGIVCYRTESGEIVCEGMDEGPQ 544
           D   GI+CY  E+GE+VCEG+DEGP+
Sbjct: 62  DKDMGILCYTDENGELVCEGLDEGPR 87


>tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +2

Query: 392 APRTRETEN-VSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQF 547
           AP+ + T   V LK  A      V+ D+++GI+CY+ ESGEI+CEG DEGP +
Sbjct: 35  APKKKSTVGPVLLKITASIKNKVVYEDESQGIICYQDESGEIICEGYDEGPSY 87


>tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163485 PE=4 SV=1
          Length = 151

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 31/97 (31%), Positives = 47/97 (48%)
 Frame = +2

Query: 263 CSVPIRMIGMPCAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAE 442
           CS P+ ++     K     +S  V  +S+  HS   +A+   S+ +    E  +      
Sbjct: 12  CSSPVVLVSSGVVK-----KSATVQLASQCRHSLACRASSNGSSVKASREEGST------ 60

Query: 443 DAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYP 553
            +   VF D T+GIVCY ++ GE+ CEG DEG  F P
Sbjct: 61  -STPPVFEDSTEGIVCYISKEGEVTCEGWDEGGHFQP 96


>tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82514 PE=4 SV=1
          Length = 104

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = +2

Query: 425 LKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYP 553
           +K    +   +VF D++ GIVCY  E GEI CEG DEGP F P
Sbjct: 9   MKNSHRNLPEQVFKDESNGIVCYVNEDGEITCEGWDEGPHFIP 51