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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954483
Clone id TST39A01NGRL0020_I24
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_I24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AACAATCTCTACTCGACCAGTCGGGAGGGAGGGAGAGCGCGCGCAGAGGCGATGGGATTT
ATCAAGGAGTTCTTTGGGTATCTCATTCAGCGGAGCATGGAGGATCCAGAAGAACGCGAT
CGCAAGATCCGCGAGCACATCATTACCACCAAGGCCAACGCCGAGAAGGTGAAGCAAAGA
TGGGCGCACCCTGTCAAGCCATACGGCTACTGGACCACCGATAAGTATAACTACAAGTAC
CAACTGGAACGTAAGATAAGCAATGCCCGAGGCCGCCACGATCCTTGGGACATTTTTTCC
TAATCCCAGGTAAAGTTATCTGCAGTGGTTTCCATCAGCATAAGTCACCAGATCTAATCG
ACAGTCTTGAGTATTCATAGAACTCTCCCGGTTGTGTTGTTGTTTCTAGCAATGGATAAT
GTTTCAGGTTTTTTTGCTCTTGAAGTGCCGTCCTACATTTGAGTATCTTCAACATGCTGG
AAGTCTGTACAAAAGCTTTCTTTTGGATTTTAGCTCTTAAGAATCAGTATTGGAGGTTTT
CTGATGTATGTTGTGTTTAGCACGTGTGGTTAGACGCTTTTGAACACCGATTAGAGTGGA
GGATGTCCGTCTT
■■Homology search results ■■ -
sp_hit_id A4IF98
Definition sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus
Align length 41
Score (bit) 33.5
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954483|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_I24, 5'
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 ...    33   0.89 
sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI OS=Esche...    33   1.5  
sp|Q71RS6|NCKX5_HUMAN Sodium/potassium/calcium exchanger 5 OS=Ho...    32   3.3  
sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 ...    32   3.4  
sp|Q30TW1|RL2_SULDN 50S ribosomal protein L2 OS=Sulfurimonas den...    32   3.4  
sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurosp...    32   3.4  
sp|Q9P0U4|CXXC1_HUMAN CpG-binding protein OS=Homo sapiens GN=CXX...    31   5.7  
sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 ...    31   5.8  
sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing fami...    30   7.5  
sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel...    30   9.7  

>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1
           OS=Bos taurus GN=RMI1 PE=2 SV=1
          Length = 624

 Score = 33.5 bits (75), Expect = 0.89
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 376 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 498
           HR LP  +L      ++GFFAL++ S + VS   +  +QKL
Sbjct: 66  HRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKL 106


>sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI
           OS=Escherichia coli (strain K12) GN=yahI PE=3 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 76  GYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYNYKYQ 243
           GYLIQ+++ +   R  + +   + T+   +K    +AHP KP G + +D    + Q
Sbjct: 90  GYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSDSQRDELQ 145


>sp|Q71RS6|NCKX5_HUMAN Sodium/potassium/calcium exchanger 5 OS=Homo
           sapiens GN=SLC24A5 PE=1 SV=1
          Length = 500

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
 Frame = +3

Query: 462 SIFNMLEVCTKAFFWILAL-------------KNQYWR--FSDVCCV*HVWLDAFEHRLE 596
           S+FNM E   K  FW+L+L             + ++W+  F     +  +W+ AF + L 
Sbjct: 294 SVFNMPEADLKRIFWVLSLPIITLLFLTTPDCRKKFWKNYFVITFFMSAIWISAFTYILV 353

Query: 597 WRMSV 611
           W +++
Sbjct: 354 WMVTI 358


>sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1
           OS=Mus musculus GN=Rmi1 PE=2 SV=1
          Length = 616

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 376 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 498
           H  LP  +L L    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q30TW1|RL2_SULDN 50S ribosomal protein L2 OS=Sulfurimonas
           denitrificans (strain ATCC 33889 / DSM 1251) GN=rplB
           PE=3 SV=1
          Length = 279

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
 Frame = -2

Query: 567 TRAKHNIHQKTSNTDS*ELKSKRKLLYRLPAC*RYSNVGR------HFKSKKT*NIIHC* 406
           T      +    N D     S R LL +LPA    +N GR         +KK   II   
Sbjct: 9   TTPSRRFYTNVENNDITSKPSVRSLLVKLPASAGRNNNGRITSRHREAGAKKLYRIIDFK 68

Query: 405 KQQHNRESSMNT------QDCRLDLVTYADGNHCR*LYLGLGKNVPRIVAA 271
           + +     +++T      ++CR+ L+TY DG   R + L  G NV   + A
Sbjct: 69  RDKFGIAGTVSTVEYDPYRNCRIALITYVDGEK-RYILLPKGLNVGDAIIA 118


>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora
           crassa GN=dbp-5 PE=3 SV=1
          Length = 483

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 34  RARAEAMGFIKEFFGY-LIQRSMEDPEERDRKIREHIITTKANAEKV 171
           R   EA+  I +F+G  LIQ +  D ++ +RK++E I +++A AE V
Sbjct: 429 RRSFEALSQIAQFYGIDLIQLNPNDLDDTERKVQEVIKSSRAQAEYV 475


>sp|Q9P0U4|CXXC1_HUMAN CpG-binding protein OS=Homo sapiens GN=CXXC1
           PE=1 SV=2
          Length = 656

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
 Frame = +3

Query: 15  DQSGGRE--------SARRGDGIYQGVLWVSHSAE-HGGSRRTRSQDPRAHHYHQGQRRE 167
           D+ GGR+          R G G   G +    SA  H  S +     P  HH  Q Q+ +
Sbjct: 104 DEGGGRKRPVPDPDLQRRAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIK 163

Query: 168 GEAKMGAPCQAIR 206
             A+M   C+A R
Sbjct: 164 RSARMCGECEACR 176


>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1
           OS=Homo sapiens GN=RMI1 PE=1 SV=2
          Length = 625

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 376 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 498
           H  LP  +L +    ++GF+AL++ S + VS   +  +QKL
Sbjct: 66  HPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKL 106


>sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing family
           A member 4 OS=Mus musculus GN=Plekha4 PE=2 SV=1
          Length = 588

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 25/91 (27%), Positives = 36/91 (39%)
 Frame = +3

Query: 87  SAEHGGSRRTRSQDPRAHHYHQGQRREGEAKMGAPCQAIRLLDHR*V*LQVPTGT*DKQC 266
           S+E GG R  RS  PR     + + +  +A  G+              LQ+P        
Sbjct: 302 SSEAGGERPPRSPQPRTP---EQRTQSTQATSGSSTY-----------LQLP-------- 339

Query: 267 PRPPRSLGHFFLIPGKVICSGFHQHKSPDLI 359
           PRPP +     L+PG  + S  HQ    D +
Sbjct: 340 PRPPGTQASMILLPGPPVDSALHQSLETDTL 370


>sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel
            subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2
          Length = 2505

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 84   HSAEHGGSRRTRSQDPRA-----HHYHQGQRREGEAKMGAPCQAIRLLDHR 221
            H    GGSR +RS  PR      H  H+  RR GE   G   +A R   HR
Sbjct: 933  HVHRQGGSRESRSGSPRTGADGEHRRHRAHRRPGEE--GPEDKAERRARHR 981
tr_hit_id A9RBY6
Definition tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 80
Score (bit) 93.6
E-value 8.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954483|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_I24, 5'
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella paten...    94   8e-18
tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative uncharacte...    91   7e-17
tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Popul...    89   2e-16
tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein OS=Hyaci...    87   1e-15
tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus orie...    87   1e-15
tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea m...    85   3e-15
tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subs...    84   5e-15
tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea m...    84   5e-15
tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza...    84   5e-15
tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genom...    84   9e-15
tr|A5BVR1|A5BVR1_VITVI Putative uncharacterized protein OS=Vitis...    84   9e-15
tr|A9NN34|A9NN34_PICSI Putative uncharacterized protein OS=Picea...    74   5e-12
tr|Q2PXN5|Q2PXN5_ARAHY RW1-like protein (Fragment) OS=Arachis hy...    71   6e-11
tr|A4S8M2|A4S8M2_OSTLU Predicted protein OS=Ostreococcus lucimar...    41   0.063
tr|B6KKT9|B6KKT9_TOXGO Putative uncharacterized protein OS=Toxop...    36   2.0  
tr|B6QQJ4|B6QQJ4_PENMA Methyltransferase-like protein 1 OS=Penic...    36   2.0  
tr|A9GU50|A9GU50_9RHOB Uridylate kinase, putative OS=Roseobacter...    34   5.8  
tr|A6PQ76|A6PQ76_9BACT Putative uncharacterized protein OS=Victi...    34   5.8  
tr|Q4S379|Q4S379_TETNG Chromosome 4 SCAF14752, whole genome shot...    34   7.7  
tr|B8LWH0|B8LWH0_9EURO Methyltransferase-like protein 1 OS=Talar...    34   7.7  

>tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62174 PE=4 SV=1
          Length = 89

 Score = 93.6 bits (231), Expect = 8e-18
 Identities = 40/80 (50%), Positives = 57/80 (71%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGF+ EF  + I+RSME+P+ERD K R+H+ +TK    K+K+ WA+PVKPYG W TDK N
Sbjct: 1   MGFMMEFVEHWIRRSMENPDERDAKFRKHVYSTKEQCVKLKESWANPVKPYGSWNTDKNN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
           +K+  +  +S   GR DP++
Sbjct: 61  HKFLQDLTLSRMPGRSDPYE 80


>tr|Q9FYF8|Q9FYF8_ARATH F1N21.17 (At1g67350) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 98

 Score = 90.5 bits (223), Expect = 7e-17
 Identities = 39/80 (48%), Positives = 55/80 (68%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGFI EF   L+ R ME+PEERDRK REHI       +K+K+ WA P++PYG+WT +++N
Sbjct: 1   MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            + + + +IS   GR DP+D
Sbjct: 61  AQLRWDPQISQVAGRRDPYD 80


>tr|A9P8A9|A9P8A9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 91

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 37/80 (46%), Positives = 54/80 (67%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGFI EF   L+ R MEDP+ERDRK RE +   K   +K K+ W++P++PYG+WT +++N
Sbjct: 1   MGFIMEFAENLVLRLMEDPKERDRKFRERVYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS   GR DP+D
Sbjct: 61  AQLAWDAQISQVPGRRDPYD 80


>tr|Q5YJQ2|Q5YJQ2_HYAOR Putative uncharacterized protein
           OS=Hyacinthus orientalis PE=4 SV=1
          Length = 91

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           M F+ EF   LI R MEDP+ERD++ REH+   K   +K K+ W+ P++PYG+WT D++N
Sbjct: 1   MKFVMEFAENLILRMMEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS   GR DP+D
Sbjct: 61  AQLAWDSQISQVPGRRDPYD 80


>tr|Q5YJP9|Q5YJP9_HYAOR At1g67350-like protein OS=Hyacinthus
           orientalis PE=4 SV=1
          Length = 91

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           M F+ EF   LI R MEDP+ERD++ REH+   K   +K K+ W+ P++PYG+WT D++N
Sbjct: 1   MKFVMEFAENLILRMMEDPKERDKRAREHVYAIKDQCKKTKEMWSLPIRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS   GR DP+D
Sbjct: 61  AQLAWDAQISQVPGRRDPYD 80


>tr|B6SI77|B6SI77_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 37/80 (46%), Positives = 53/80 (66%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGFI +F   LI R MEDP++RD+  REH+   K   E+ K  W+ P++PYG+WT D++N
Sbjct: 1   MGFIMDFAENLILRLMEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS A GR DP+D
Sbjct: 61  SQLSWDPQISQAAGRRDPYD 80


>tr|Q6AVU9|Q6AVU9_ORYSJ Os03g0685900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0024N19.16 PE=4 SV=1
          Length = 94

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGF+ EF   LI R MEDP +RD   REH+   K   E+ K  W+ P++PYG+WT D++N
Sbjct: 1   MGFVMEFAENLILRMMEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS+A GR DP+D
Sbjct: 61  SQLSWDPQISHAPGRRDPYD 80


>tr|B6TWW8|B6TWW8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 93

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 36/80 (45%), Positives = 53/80 (66%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGFI +F   +I R MEDP++RD+  REH+   K   E+ K  W+ P++PYG+WT D++N
Sbjct: 1   MGFIMDFAENMILRLMEDPDKRDQVRREHVYKMKERCERTKAAWSLPLRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS A GR DP+D
Sbjct: 61  SQLSWDPQISQAAGRRDPYD 80


>tr|A2XKS7|A2XKS7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13066 PE=4 SV=1
          Length = 94

 Score = 84.3 bits (207), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGF+ EF   LI R MEDP +RD   REH+   K   E+ K  W+ P++PYG+WT D++N
Sbjct: 1   MGFVMEFAENLILRMMEDPGKRDAAQREHVYRMKERCERTKAAWSLPLRPYGFWTFDRFN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS+A GR DP+D
Sbjct: 61  SQLSWDPQISHAPGRRDPYD 80


>tr|A7QP62|A7QP62_VITVI Chromosome chr1 scaffold_136, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002814001
           PE=4 SV=1
          Length = 91

 Score = 83.6 bits (205), Expect = 9e-15
 Identities = 35/80 (43%), Positives = 53/80 (66%)
 Frame = +1

Query: 52  MGFIKEFFGYLIQRSMEDPEERDRKIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKYN 231
           MGFI EF   LI + MEDP+ERDR+ RE +   K   ++ K+ W+ P++PYG+WT +++N
Sbjct: 1   MGFIMEFAENLILKLMEDPKERDRRARERLYAVKDRCDRTKEIWSFPIRPYGFWTFERHN 60

Query: 232 YKYQLERKISNARGRHDPWD 291
            +   + +IS   GR DP+D
Sbjct: 61  SQLAWDPQISQVPGRRDPYD 80