DK954491 |
Clone id |
TST39A01NGRL0020_J08 |
Library |
TST39 |
Length |
672 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J08. 5' end sequence. |
Accession |
DK954491 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL103Contig1 |
Sequence |
GGCAGAGGGACTAAGGAGGTCAGAAGATCGGCCGCAGCGATGGCCAAGTCTGCAACGAGA GCCCCTCGCAACAAGGAGCTAGTGCGTGGCGTTGGGCGCCTCTCACGATCGCGTGTCTAC CACAAGCGCGGCCTGTGGGCAATTAAGGCCAAGCATGGTGGATCCTTTCCGACCCATGCC AAGAAGGAGGTGGCCGCCCCAGCTGCCGCAAAGGCACCCAAGTTCTACCCAGCAGACGAT GTGCCGAAGCCTCTGTGCAACAAGCGGGTAATCAAGAAGACCAAGATCAGGGCCAGCATT ACCCCAGGAACAGTGCTCATCTTATTGGCTGGTCACTTCAAGGGCAAGCGTGCTGTCTTC TTGAAGCAGCTAGATTCTGGCTTGCTACTGGTTACAGGGCCTTTCAAACTGAATGGAGTT CCTCTCCGCAGAGTCAACCAAGCATATGTGATCGCCACATCCACTAAGCTTGATGTCAGC TCGGTAGATGCTAGTAAAATCTCCGATTCTTATTTTAAAAGAGAAGAAGTGAAGAAGAAA AAGGGGGAGAGCGAGTTTTTCGAGGGCGAGAAAGAGGACTCAAAGTCCGTGCCAGCTGAG AAGAAGGAAGAACAAAAAGCTGTTGATTCCAAGCTGTTGGCGGTTGTAGAGTCTATCCCG GACATGAAATCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34091 |
Definition |
sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum |
Align length |
186 |
Score (bit) |
195.0 |
E-value |
2.0e-49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954491|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_J08, 5' (672 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum... 195 2e-49 sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis t... 189 1e-47 sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis t... 187 3e-47 sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis t... 186 1e-46 sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium di... 120 5e-27 sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomy... 120 7e-27 sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces... 119 1e-26 sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanig... 118 2e-26 sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6... 117 6e-26 sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RP... 117 6e-26 sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=... 117 7e-26 sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus ... 115 2e-25 sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=... 114 4e-25 sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces... 113 1e-24 sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis e... 101 4e-21 sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus h... 47 1e-04 sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus a... 46 2e-04 sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum ... 43 0.001 sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.002 sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.003 sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum ... 42 0.003 sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e OS=Sulfolobus t... 42 0.004 sp|Q980C1|RL14E_SULSO 50S ribosomal protein L14e OS=Sulfolobus s... 42 0.004 sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphae... 42 0.004 sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylother... 41 0.007 sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pe... 39 0.019 sp|Q8TX43|RL14E_METKA 50S ribosomal protein L14e OS=Methanopyrus... 39 0.025 sp|P59937|RL14E_PYRHO 50S ribosomal protein L14e OS=Pyrococcus h... 35 0.36 sp|Q8U2L5|RL14E_PYRFU 50S ribosomal protein L14e OS=Pyrococcus f... 35 0.36 sp|Q9UZJ5|RL14E_PYRAB 50S ribosomal protein L14e OS=Pyrococcus a... 35 0.36
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1 Length = 234
Score = 195 bits (495), Expect = 2e-49 Identities = 105/186 (56%), Positives = 119/186 (63%), Gaps = 1/186 (0%) Frame = +1
Query: 118 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 297 YHKRGLWAIKAK+GG FP H DDV KPL NKR K TK+RAS Sbjct: 30 YHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRAS 89
Query: 298 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 477 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVIATSTK+D+ Sbjct: 90 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDI 149
Query: 478 SSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXV-PAEKKEEQKAVDSKLLAVVES 654 S V+ K D Y V P EKK++QKAVD LL +E Sbjct: 150 SGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEG 209
Query: 655 IPDMKS 672 +P++K+ Sbjct: 210 VPELKA 215
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1 Length = 233
Score = 189 bits (480), Expect = 1e-47 Identities = 99/185 (53%), Positives = 118/185 (63%), Gaps = 1/185 (0%) Frame = +1
Query: 118 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 297 YHKRGLWAIKAK+GG FP H +DV KPL N+R K TK++AS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKAS 88
Query: 298 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 477 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDI 148
Query: 478 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 654 S V+ K D Y +P EKKE+QK VD+ L+ +E+ Sbjct: 149 SGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEA 208
Query: 655 IPDMK 669 +P++K Sbjct: 209 VPELK 213
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2 SV=1 Length = 233
Score = 187 bits (476), Expect = 3e-47 Identities = 99/186 (53%), Positives = 118/186 (63%), Gaps = 1/186 (0%) Frame = +1
Query: 118 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 297 YHKRGLWAIKAK+GG FP H +DV KPL N+R K TK+RAS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRAS 88
Query: 298 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 477 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
Query: 478 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 654 S V K D Y +P KK++QKAVD+ L+ +E+ Sbjct: 149 SGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEA 208
Query: 655 IPDMKS 672 +P++K+ Sbjct: 209 VPELKT 214
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1 Length = 233
Score = 186 bits (471), Expect = 1e-46 Identities = 98/186 (52%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Frame = +1
Query: 118 YHKRGLWAIKAKHGGSFPTHXXXXXXXXXXXXXXXXXXXDDVPKPLCNKRVIKKTKIRAS 297 YHKRGLWAIKAK+GG FP H +DV KPL N+R K K+RAS Sbjct: 29 YHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRAS 88
Query: 298 ITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQAYVIATSTKLDV 477 ITPGTVLI+LAG FKGKR VFLKQL SGLLLVTGPFK+NGVPLRRVNQAYVI TSTK+D+ Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
Query: 478 SSVDASKISDSY-XXXXXXXXXXXXXXXXXXXXXXXXXVPAEKKEEQKAVDSKLLAVVES 654 S V K D Y +P KK++QKAVD+ L+ +E+ Sbjct: 149 SGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEA 208
Query: 655 IPDMKS 672 +P++K+ Sbjct: 209 VPELKT 214
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=3 SV=1 Length = 236
Score = 120 bits (302), Expect = 5e-27 Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 2/132 (1%) Frame = +1
Query: 262 KRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLNGVPLRRVNQ 441 K+V +K +R SITPGTVLI+LAG F GKR V LKQLDSGL+L+TGPFK+NGVPLRR++Q Sbjct: 79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQ 138
Query: 442 AYVIATSTKLDVSSVD-ASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXVPAEKK-EEQ 615 YVIATSTK+DVSSV A+ I+D+Y A+ + +Q Sbjct: 139 RYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEKKKIADSRVADQ 198
Query: 616 KAVDSKLLAVVE 651 K+VDS +LAV++ Sbjct: 199 KSVDSAILAVLK 210
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2 Length = 195
Score = 120 bits (301), Expect = 7e-27 Identities = 67/146 (45%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Frame = +1
Query: 235 DDVPKPLCNKRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLN 414 ++VPK ++ ++ TK+RAS+ PGTV ILLAG F+GKR V L QL+ L+VTGP+K+N Sbjct: 33 ENVPKKA--RKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVN 89
Query: 415 GVPLRRVNQAYVIATST-KLDVSSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXV 591 GVP+RRVN YVIATS K+DVS V K + +Y + Sbjct: 90 GVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAPKNAL 149
Query: 592 PAEKKEEQKAVDSKLLAVVESIPDMK 669 PAE+ +QKAVD+KLL +++IP+MK Sbjct: 150 PAERIADQKAVDAKLLPAIKAIPNMK 175
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4 Length = 176
Score = 119 bits (299), Expect = 1e-26 Identities = 65/145 (44%), Positives = 85/145 (58%) Frame = +1
Query: 235 DDVPKPLCNKRVIKKTKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGPFKLN 414 +DV P ++ ++ K+RAS+ PGTVLILLAG F+GKR V+LK L+ LLVTGPFK+N Sbjct: 13 EDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVN 72
Query: 415 GVPLRRVNQAYVIATSTKLDVSSVDASKISDSYXXXXXXXXXXXXXXXXXXXXXXXXXVP 594 GVPLRRVN YVIATSTK+ V V+ K + Y + Sbjct: 73 GVPLRRVNARYVIATSTKVSVEGVNVEKFNVEY-FAKEKLTKKEKKEANLFPEQQTKEIK 131
Query: 595 AEKKEEQKAVDSKLLAVVESIPDMK 669 E+ E+QK VD LLA ++ P +K Sbjct: 132 TERVEDQKVVDKALLAEIKKTPLLK 156
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3 Length = 288
Score = 118 bits (296), Expect = 2e-26 Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 5/150 (3%) Frame = +1
Query: 235 DDVPKPLCN--KRVIKK--TKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGP 402 +DVP+ L + K+ + K+RASITPGTVLI+L G +GKR VFLKQL SGLLLVTGP Sbjct: 119 EDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGP 178
Query: 403 FKLNGVPLRRVNQAYVIATSTKLDVSSVDASK-ISDSYXXXXXXXXXXXXXXXXXXXXXX 579 LN VPLRR +Q +VIATSTK+D+S+V K ++D+Y Sbjct: 179 LNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKE 238
Query: 580 XXXVPAEKKEEQKAVDSKLLAVVESIPDMK 669 + ++K +QKAVDS++L ++++P ++ Sbjct: 239 RYQISEQRKVDQKAVDSQILPKIKAVPQLR 268
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3 Length = 284
Score = 117 bits (293), Expect = 6e-26 Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 5/150 (3%) Frame = +1
Query: 235 DDVPKPLCN--KRVIKK--TKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGP 402 +DVP+ L + K+ K K+RASITPGT+LI+L G +GKR +FLKQL SGLLLVTGP Sbjct: 115 EDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP 174
Query: 403 FKLNGVPLRRVNQAYVIATSTKLDVSSVDASK-ISDSYXXXXXXXXXXXXXXXXXXXXXX 579 LN VPLRR +Q +VIATSTK+D+S V + ++D+Y Sbjct: 175 LSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKE 234
Query: 580 XXXVPAEKKEEQKAVDSKLLAVVESIPDMK 669 + ++K +QKAVDS++L ++++P ++ Sbjct: 235 KYEISEQRKVDQKAVDSQILRRIKAVPQLQ 264
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3 Length = 287
Score = 117 bits (293), Expect = 6e-26 Identities = 66/150 (44%), Positives = 94/150 (62%), Gaps = 5/150 (3%) Frame = +1
Query: 235 DDVPKPLCN--KRVIKK--TKIRASITPGTVLILLAGHFKGKRAVFLKQLDSGLLLVTGP 402 +DVP+ L + K+ K K+RASITPGT+LI+L G +GKR VFLKQL SGLLLVTGP Sbjct: 118 EDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGP 177
Query: 403 FKLNGVPLRRVNQAYVIATSTKLDVSSVDASK-ISDSYXXXXXXXXXXXXXXXXXXXXXX 579 LN VPLRR +Q +VIATSTK+D+S V + ++D+Y Sbjct: 178 LSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTERE 237
Query: 580 XXXVPAEKKEEQKAVDSKLLAVVESIPDMK 669 + ++K +QKAVDS++L ++++P ++ Sbjct: 238 KYEITEQRKVDQKAVDSQILRRIKAVPQLQ 267
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Y8 |
Definition |
tr|A9S9Y8|A9S9Y8_PHYPA 60S ribosomal protein L6 OS=Physcomitrella patens subsp. patens |
Align length |
186 |
Score (bit) |
208.0 |
E-value |
3.0e-52 |
Report |
|