DK954497
Clone id TST39A01NGRL0020_J14
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTCCAGTCTATAAAGAGGCCAAGCAATTAAGATGTCTAGTTGTGGAAATTCAAACTGTAG
CTGCGGCTCTTCGTGCTCGTGTGGAAGTGGCTGCCAATGCGGCAAGAGGACCTCTGATAT
AATGGATGCTTCTATATTCGAGTGCAGCATGCCGAGGACAGAAAGATCGATCATGGCATG
CACTTGGATCACTTCCGGATTCCAGTATTACCTCGATGGGCCTTCTCCTTTTCCAGCTTA
ATGAAACACTGCCTTTTCACACCCTTCTACCATTATATTGACCGCCCTCAGCATCGTCCG
ACGCCTTGTTACTACGTTAGAATAAGCGCAGATTCAAAAATCTGCCTTCTCAATAACCCA
CGTGGCAACGCTTCGTTTCCTACTTGTACATATATATATATATATATATGCAAATTGGAC
AAAAAAAATTAAAAATAAAAAAAAAAAAAAAAAAAAACCCCAA
■■Homology search results ■■ -
sp_hit_id Q12P60
Definition sp|Q12P60|MNMC_SHEDO tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Align length 64
Score (bit) 30.4
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954497|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J14, 5'
(420 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q12P60|MNMC_SHEDO tRNA 5-methylaminomethyl-2-thiouridine bios... 30 3.0

>sp|Q12P60|MNMC_SHEDO tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
GN=mnmC PE=3 SV=1
Length = 754

Score = 30.4 bits (67), Expect = 3.0
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Frame = -1

Query: 153 GMLHSNIEASIISEVLLPHWQPLPH---------EHEEPQLQF-----EFPQLDILIAWP 16
G LHSN+ + E + HW LPH E + QLQF QL+ I W
Sbjct: 164 GDLHSNLTELMTPEHRVTHWHCLPHIAHTQTEFAETQASQLQFNQVQSNANQLNQAILWQ 223

Query: 15 LYRL 4
+ RL
Sbjct: 224 MGRL 227


tr_hit_id A7QZ97
Definition tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954497|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J14, 5'
(420 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, who... 35 1.4
tr|Q6VZW7|Q6VZW7_CNPV CNPV030 ankyrin repeat protein OS=Canarypo... 35 1.9
tr|B7FLS2|B7FLS2_MEDTR Putative uncharacterized protein OS=Medic... 34 3.1
tr|A7QZA2|A7QZA2_VITVI Chromosome undetermined scaffold_268, who... 34 3.1
tr|B7Q230|B7Q230_IXOSC Putative uncharacterized protein OS=Ixode... 34 4.1
tr|B1FD05|B1FD05_9BURK Zn-dependent hydrolase of the beta-lactam... 33 9.2

>tr|A7QZ97|A7QZ97_VITVI Chromosome undetermined scaffold_268, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010554001 PE=4 SV=1
Length = 618

Score = 35.4 bits (80), Expect = 1.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1

Query: 166 IDHGMHLDHFRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 297
ID ++ H ++P+W FS +K+ ++TP +H + Q R
Sbjct: 213 IDFMNNMGHCNFELVPKWLFSIFPFLKYLMYTPSFHSLHHTQFR 256


>tr|Q6VZW7|Q6VZW7_CNPV CNPV030 ankyrin repeat protein OS=Canarypox
virus GN=CNPV030 PE=4 SV=1
Length = 340

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -3

Query: 280 QYNGRRV*KGSVSLSWKRRRPIEVILESGSDPSACHDRSFCPRHAALEYRSIHYIR 113
+YN + + ++ K+R+ ++ +L G+DP+ S+CP H A+ S+ IR
Sbjct: 19 EYNKNGYTRLYIEVAMKKRKNVDRLLYLGADPNLASADSYCPLHIAVRNGSLKIIR 74


>tr|B7FLS2|B7FLS2_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 385

Score = 34.3 bits (77), Expect = 3.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1

Query: 166 IDHGMHLDHFRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRPQHR 297
ID +L H ++P+W F +K+ ++TP +H + Q R
Sbjct: 213 IDFMNNLGHCNFEIVPKWLFDIFPPLKYLMYTPSFHSLHHTQFR 256


>tr|A7QZA2|A7QZA2_VITVI Chromosome undetermined scaffold_268, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010560001 PE=4 SV=1
Length = 256

Score = 34.3 bits (77), Expect = 3.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1

Query: 166 IDHGMHLDHFRIPVLPRWAFSFSSLMKHCLFTPFYHYIDRP 288
ID ++ H ++P+W FS +K+ ++TP +H P
Sbjct: 213 IDFMNNMGHCNFELVPKWLFSIFPFLKYLMYTPSFHSTSHP 253


>tr|B7Q230|B7Q230_IXOSC Putative uncharacterized protein OS=Ixodes
scapularis GN=IscW_ISCW009240 PE=4 SV=1
Length = 341

Score = 33.9 bits (76), Expect = 4.1
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1

Query: 147 LHSNIEASIISEVLL-PHWQPLPHEHEEPQLQFEFPQLDILIAWPLYR 7
L S ++ +ISE+LL PH +P H EPQL E P L L P R
Sbjct: 131 LQSYVQPGVISELLLEPHSEPHTESHLEPQLILEPPPLPSLQPEPRSR 178


>tr|B1FD05|B1FD05_9BURK Zn-dependent hydrolase of the beta-lactamase
fold-like protein OS=Burkholderia ambifaria IOP40-10
GN=BamIOP4010DRAFT_1914 PE=4 SV=1
Length = 475

Score = 32.7 bits (73), Expect = 9.2
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1

Query: 99 HWQPLPHEHEEPQ-LQFEFPQLDILIAWPLY 10
HWQPL +E+P+ L E P+ D +AWP +
Sbjct: 128 HWQPLSELYEDPRLLGCERPEGDAALAWPAF 158