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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954498
Clone id TST39A01NGRL0020_J15
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTGAAAAGAAGTTTGCTTAGGTTTCGCTTTGCGTTGATTGCGCTGCACAGAAGCTCGTCA
ATGGCGTATCCGGATCCTTACTCGGGCAAGAGTACTTTTGCACAGGTGTGCAGGGTATCA
GCACTCTTGCTAGGTTTTACGTATGGCACCATCAAATTGCAATATATTTGAAGGTCGCAG
CAAAGGCAGAGCAGAAGGCAGCTGCCAAGGCACTACTCTATTATATAAATGGGGACAGCA
TAGAACGGCCCTCGGTTTTCCACCTCGGAAAAGGCTCGGAAAATTGTCTTCTCATAAAAA
GGGCCTTAACAATTTTCTGATGCATGTAACTGAGGACTACACATGTGCAGGCGGATTTTG
CTTGAATCCTGCAAATATTTATGCTGCCTGTCAGCATGTCATTCTTGAAAGAGTTATTCC
ATGTGAGTCGGCGGCCATTCAAATAAATGCCTTTTCTGTGCGATAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P40604
Definition sp|P40604|YTRP_PSEPU Uncharacterized protein in trpE-trpG intergenic region OS=Pseudomonas putida
Align length 32
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954498|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J15, 5'
         (464 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40604|YTRP_PSEPU Uncharacterized protein in trpE-trpG interg...    31   2.3  
sp|Q08312|COTZ_BACSU Spore coat protein Z OS=Bacillus subtilis G...    30   5.1  
sp|Q89621|YO2_ADEG1 Uncharacterized protein ORF2 OS=Fowl adenovi...    30   6.7  
sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    30   6.7  
sp|Q9FNQ2|E13L2_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    29   8.7  

>sp|P40604|YTRP_PSEPU Uncharacterized protein in trpE-trpG
          intergenic region OS=Pseudomonas putida PE=3 SV=1
          Length = 592

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 4  KRSLLRFRFALIALHRSSSMAYPDPYSGKSTF 99
          K  LLRF  A +AL  S + A P PYSG   F
Sbjct: 3  KAPLLRFTLASLALACSQAFAAPSPYSGMIVF 34


>sp|Q08312|COTZ_BACSU Spore coat protein Z OS=Bacillus subtilis
           GN=cotZ PE=4 SV=1
          Length = 148

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 188 RAEGSCQGTTLLYKWGQHRTALGFPPRKRLGKLSSHKKGLNNFLMHVTEDYTCAGGFCLN 367
           R  GSC   +LL  + +H+  L F  +  + ++   +K   N+ + V  D  CA   CLN
Sbjct: 82  RVHGSCATLSLLIAFDEHKHILDFTDKDTVCEVFRLEK--TNYCIEVDLDCFCAIN-CLN 138

Query: 368 PANIYAACQH 397
           P  I     H
Sbjct: 139 PRLINRTHHH 148


>sp|Q89621|YO2_ADEG1 Uncharacterized protein ORF2 OS=Fowl adenovirus
           A serotype 1 (strain CELO / Phelps) GN=2 PE=4 SV=1
          Length = 276

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +2

Query: 266 RKRLGKLSS-HKKGLNN--FLMHVTEDYTCAGG 355
           R R G+LS+ H  GL +  +L+ +TED+ CAGG
Sbjct: 217 RLRSGELSAEHAVGLRDCMYLIRLTEDFDCAGG 249


>sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1
          Length = 194

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
 Frame = +2

Query: 296 KKGLNNFLMHVTEDYTCAGG----------FCLNPANIYAACQHVI 403
           K GL++ ++  T DY C  G           C NP N+ A C + +
Sbjct: 25  KTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAV 70


>sp|Q9FNQ2|E13L2_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1
          Length = 201

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
 Frame = +2

Query: 296 KKGLNNFLMHVTEDYTCAGG----------FCLNPANIYAACQHVI 403
           K GL++ ++  T DY C  G           C NP N+ + C + +
Sbjct: 25  KTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAV 70
tr_hit_id A9NLR8
Definition tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 36
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954498|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J15, 5'
         (464 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Popul...    45   0.002
tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome ...    44   0.005
tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Popul...    39   0.13 
tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subs...    39   0.17 
tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa GN=H02...    39   0.17 
tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.28 
tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.28 
tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Popul...    37   0.48 
tr|B6T134|B6T134_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.63 
tr|B6SPF6|B6SPF6_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|Q9MAC4|Q9MAC4_ARATH T4P13.18 protein (At3g01130) OS=Arabidops...    35   1.8  
tr|Q8LDZ3|Q8LDZ3_ARATH Putative uncharacterized protein OS=Arabi...    35   1.8  
tr|B6T0M6|B6T0M6_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.1  
tr|Q9LXF0|Q9LXF0_ARATH Putative uncharacterized protein F8M21_21...    33   7.0  
tr|Q8GXE7|Q8GXE7_ARATH GPI-anchored protein (At5g15320) OS=Arabi...    33   7.0  
tr|Q8F359|Q8F359_LEPIN Putative uncharacterized protein OS=Lepto...    33   9.1  
tr|Q72SG1|Q72SG1_LEPIC Homoserine kinase type II OS=Leptospira i...    33   9.1  
tr|A8MQH0|A8MQH0_ARATH Uncharacterized protein At5g15320.2 OS=Ar...    33   9.1  

>tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 52

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = +1

Query: 61  MAYPDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           MA P PYSG STFA V RVSA  LG  YG++KL Y+
Sbjct: 1   MAGPGPYSGTSTFALVARVSAFTLGVVYGSMKLSYL 36


>tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 55

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V RVSA  LG  YG++KL+Y+
Sbjct: 5   PGPYSGTSTLALVARVSAFSLGLVYGSVKLKYL 37


>tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035980001
           PE=4 SV=1
          Length = 53

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V RVSA   G  YG+IKL+Y+
Sbjct: 5   PGPYSGTSTLALVARVSAFSAGLVYGSIKLKYL 37


>tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SA   G  YG++KL+ +
Sbjct: 5   PGPYSGASTLALVARASAFSFGLVYGSVKLKIL 37


>tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0050O03.8 PE=4 SV=2
          Length = 52

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SAL +G  YG +KL  +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa
           GN=H0207B04.8 PE=4 SV=1
          Length = 52

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SAL +G  YG +KL  +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14632 PE=4 SV=1
          Length = 52

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SAL +G  YG +KL  +
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SA  +G  YG+IKL  +
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSIL 37


>tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG ST A V R SA  +G  YG+IKL  +
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSIL 37


>tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  PDPYSGKSTFAQVCRVSALLLGFTYGTIKLQYI 168
           P PYSG S  A V R SA   G  YG++KL+ +
Sbjct: 5   PGPYSGASALALVARASAFSFGLVYGSVKLKIL 37