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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954502
Clone id TST39A01NGRL0020_J19
Library
Length 627
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATAGACACACACACACACACACTCTTCGCAAGTCGCAAGCCCGCGTGCGCGCGCACAGGC
GCACACAGACACACACACACACACACACACAGGCGCGCAGACATTTCGATCCCGTGCGGC
GCTCACAGGGTTTGTTGAACATCGCATTCGCGCCTCGTTCTTGGTGGCCCAATTTGCGCT
GTCCATGGAAGCTGTCGCCCATGCTTCGCCCCGCTCATTGAGTCCTGCGTCCAGCCATGG
CTTGCCTTCCCCTAGGCCAACGACAGCTACTCCCGCAGGGCTGTGGGTACAGTCTCTGGG
TTCGAAGCTCTCGTCCGCATCCCTCCCCTTGAAGAAGCCCTGTGCGTGGGGTCAAAAGAG
CAGGAGAGGACTCTGTATGGAAGTGAATGCATCTCTTATTGCCGATGATCTGGATGTAGT
GCCTATGACGAGTAAGGACCCTGTCGATCAGCAGCAAGGGGATTCCGTCCTCATGGGAAT
TGAGAGCGTAGAGGAGCAGTCACCCTTGGCCTCCTCTCCTGGTGGCTTCTCACCCGAATC
TCCCTTCGCTTTTGATCTCAGCTCAATGGCAGCCTCTGGAGCTTCAAATGAAGCCCAGGT
GCTTGTGGCTTCTGTGTCCGACATGCC
■■Homology search results ■■ -
sp_hit_id Q9T1X0
Definition sp|Q9T1X0|VG24_BPMU Uncharacterized protein gp24 OS=Enterobacteria phage Mu
Align length 27
Score (bit) 33.9
E-value 0.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954502|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J19, 5'
         (627 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9T1X0|VG24_BPMU Uncharacterized protein gp24 OS=Enterobacter...    34   0.70 
sp|P07287|ERME_SACEN rRNA adenine N-6-methyltransferase OS=Sacch...    32   3.5  
sp|Q9D7G9|MISS_MOUSE MAPK-interacting and spindle-stabilizing pr...    31   4.5  
sp|Q9BZ71|PITM3_HUMAN Membrane-associated phosphatidylinositol t...    31   6.0  
sp|Q5N517|TILS_SYNP6 tRNA(Ile)-lysidine synthase OS=Synechococcu...    30   7.7  
sp|A0AFI3|RHAD_LISW6 Rhamnulose-1-phosphate aldolase OS=Listeria...    30   7.8  
sp|Q3UHE1|PITM3_MOUSE Membrane-associated phosphatidylinositol t...    30   7.8  

>sp|Q9T1X0|VG24_BPMU Uncharacterized protein gp24 OS=Enterobacteria
           phage Mu GN=24 PE=4 SV=1
          Length = 64

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 322 GCGRELRTQRLYPQPCGSSCRWPRGRQ 242
           GCGRELR   L  QP  + C W RG +
Sbjct: 38  GCGRELRPDVLRQQPMANYCHWCRGAE 64


>sp|P07287|ERME_SACEN rRNA adenine N-6-methyltransferase
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=ermE PE=3 SV=2
          Length = 381

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -3

Query: 256 PRGRQAMAGRRTQ*AGRSMGDSFHGQRKLGHQERGANAMFNKPCERRTGSK 104
           PRG Q   GRRT       G   HG R+ G Q+RG         +RRTG +
Sbjct: 289 PRGGQPQRGRRT-------GGRDHGDRRTGGQDRG---------DRRTGGR 323


>sp|Q9D7G9|MISS_MOUSE MAPK-interacting and spindle-stabilizing
           protein OS=Mus musculus GN=Mapk1ip1 PE=1 SV=1
          Length = 263

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 495 SSHPWPPLLVASHPNLPSLL-ISAQWQPLELQMKPRCLWLLCP 620
           SS PW P +   HPN+P L   S+   PL +   P   W+  P
Sbjct: 77  SSGPWAPGMGGQHPNVPYLFPESSPTPPLPVSGAPPVAWVTVP 119


>sp|Q9BZ71|PITM3_HUMAN Membrane-associated phosphatidylinositol
           transfer protein 3 OS=Homo sapiens GN=PITPNM3 PE=1 SV=2
          Length = 974

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 543 GDSGEKPPGEEAKGDCSSTLSIPMRTESPCC*STGSLLVIGTTSRSSAIRD 391
           G SG+ P     KG  SST   P+  E  C  ++   L       SS + D
Sbjct: 281 GPSGDSPASSSRKGSISSTQDTPVAVEEDCSLASSKRLSKSNIDISSGLED 331


>sp|Q5N517|TILS_SYNP6 tRNA(Ile)-lysidine synthase OS=Synechococcus
           sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tilS
           PE=3 SV=2
          Length = 325

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = -2

Query: 263 SLA*GKASHGWTQDSMSGAKHGR------QLPWTAQIGPPRTRRE 147
           SLA     HGW  DS + A+H R      QLP+  Q  P   R E
Sbjct: 56  SLAIAHCDHGWRSDSTANAEHLRQLADQWQLPFYCQRSPEPPRSE 100


>sp|A0AFI3|RHAD_LISW6 Rhamnulose-1-phosphate aldolase OS=Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 /
           SLCC5334) GN=rhaD PE=3 SV=1
          Length = 278

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -1

Query: 279 PAGVAVVGLGEGKPWLDAGLNERGEAWATASMDS 178
           P GVAVV      PW+ AG NE GEA A    DS
Sbjct: 175 PDGVAVV------PWMVAGTNELGEASAAKMNDS 202


>sp|Q3UHE1|PITM3_MOUSE Membrane-associated phosphatidylinositol
           transfer protein 3 OS=Mus musculus GN=Pitpnm3 PE=1 SV=2
          Length = 974

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 543 GDSGEKPPGEEAKGDCSSTLSIPMRTESPCC*STGSLLVIGTTSRSSAIRD 391
           G SG+ P     KG  SST   P+  E  C  ++   L       SS + D
Sbjct: 281 GPSGDSPGSSSRKGSISSTQDTPVVVEEDCSLASSKRLSKSNVDVSSGVED 331
tr_hit_id A0QFR8
Definition tr|A0QFR8|A0QFR8_MYCA1 Aldehyde dehydrogenase (NAD) family protein OS=Mycobacterium avium (strain 104)
Align length 75
Score (bit) 37.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954502|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J19, 5'
         (627 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0QFR8|A0QFR8_MYCA1 Aldehyde dehydrogenase (NAD) family prote...    37   0.97 
tr|Q4DWC7|Q4DWC7_TRYCR Putative uncharacterized protein OS=Trypa...    36   2.1  
tr|Q4DP71|Q4DP71_TRYCR Putative uncharacterized protein OS=Trypa...    36   2.1  
tr|B6KUM6|B6KUM6_TOXGO Proline-rich protein OS=Toxoplasma gondii...    35   4.8  
tr|B3WT76|B3WT76_ECOLX Putative uncharacterized protein OS=Esche...    34   8.1  
tr|B2NA30|B2NA30_ECOLX Putative uncharacterized protein OS=Esche...    34   8.1  
tr|O13814|O13814_SCHPO Mdm10/Mdm12/Mmm1 complex subunit Mdm10 (P...    34   8.1  

>tr|A0QFR8|A0QFR8_MYCA1 Aldehyde dehydrogenase (NAD) family protein
           OS=Mycobacterium avium (strain 104) GN=MAV_2564 PE=4
           SV=1
          Length = 497

 Score = 37.0 bits (84), Expect = 0.97
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 357 F*PHAQGFFKGRDADESFEPRDCTHSPAGVAVVGLGEGKPWLDAGLNERGEAWATA--SM 184
           F P A+ F  GR  D S        +PA   V+GL       DA   +  EA A A  + 
Sbjct: 13  FNPEARLFIDGRLRDSSTGKTVDNINPANEEVLGLAT-----DASAEDMEEAIAAARRAF 67

Query: 183 DSANWATKNEARMRC 139
           DS +W+T +E R RC
Sbjct: 68  DSTDWSTNHEFRQRC 82


>tr|Q4DWC7|Q4DWC7_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509733.70 PE=4 SV=1
          Length = 503

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 233 WTQDSMSGAKHGRQLPWTAQIGPP 162
           W +D++SG +HGR  PW + IG P
Sbjct: 343 WRRDAVSGLRHGRMSPWRSSIGTP 366


>tr|Q4DP71|Q4DP71_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509599.50 PE=4 SV=1
          Length = 503

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 233 WTQDSMSGAKHGRQLPWTAQIGPP 162
           W +D++SG +HGR  PW + IG P
Sbjct: 343 WRKDAVSGLRHGRMSPWRSSIGTP 366


>tr|B6KUM6|B6KUM6_TOXGO Proline-rich protein OS=Toxoplasma gondii
           ME49 GN=TGME49_020240 PE=4 SV=1
          Length = 526

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
 Frame = -1

Query: 558 RSKAKGDSGEKPP-----GEEAKGDCSSTLSIPMRTESPCC*STGSLLVIGTTSRSSAIR 394
           RS     SG KP         A G  S T+ +P  T+SPCC + GSL        +S  R
Sbjct: 210 RSPPSPASGGKPVEGPLHSTPATGSPSETVLVPADTQSPCCGAKGSL-----PKETSPTR 264

Query: 393 DAFTSI------QSPLLLF*PHAQGFFKGRDA 316
           D  T +       SP  L  P    FF G ++
Sbjct: 265 DIGTHVPGKRSPPSPSPLQGPRLASFFVGSES 296


>tr|B3WT76|B3WT76_ECOLX Putative uncharacterized protein
           OS=Escherichia coli B171 GN=EcB171_5059 PE=4 SV=1
          Length = 64

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 322 GCGRELRTQRLYPQPCGSSCRWPRGRQ 242
           GCGRELR   L  QP  + C W RG +
Sbjct: 38  GCGRELRPDVLRQQPMANYCHWCRGAE 64


>tr|B2NA30|B2NA30_ECOLX Putative uncharacterized protein
           OS=Escherichia coli 53638 GN=Ec53638_4330 PE=4 SV=1
          Length = 64

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 322 GCGRELRTQRLYPQPCGSSCRWPRGRQ 242
           GCGRELR   L  QP  + C W RG +
Sbjct: 38  GCGRELRPDVLRQQPMANYCHWCRGAE 64


>tr|O13814|O13814_SCHPO Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           (Predicted) OS=Schizosaccharomyces pombe GN=mdm10 PE=1
           SV=1
          Length = 370

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 27/71 (38%), Positives = 34/71 (47%)
 Frame = -3

Query: 397 KRCIHFHTESSPALLTPRTGLLQGEGCGRELRTQRLYPQPCGSSCRWPRGRQAMAGRRTQ 218
           KRC+ F  ESS A+L  R GL       REL T+        S+ RW  G +   G  T+
Sbjct: 175 KRCLEFVYESSGAMLGVR-GLWNLNY--RELNTKINMENKAPSNMRWSLGFETYYGVLTK 231

Query: 217 *AGRSMGDSFH 185
            AG S+G   H
Sbjct: 232 CAGASLGMRLH 242