DK954504 |
Clone id |
TST39A01NGRL0020_J21 |
Library |
TST39 |
Length |
585 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J21. 5' end sequence. |
Accession |
DK954504 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL324Contig1 |
Sequence |
AGCCGCCTTTCTCACCTGGCGACCCCCATCTCAGAGCTCATCCTGTTCGGCCTCTAGCTC GTCATCTCCTCCTCGTTCCTCCGGGTCCGCTTGCGCTTTTGTACAAACCCTCCAATTCAG AAATTATCCTAGTCACGCGAGCCCTTTTTCAACCTCATTGCACGTGAGCTCCTTCTGCTC TTCCTCAAGGAGTTGCAAGCACGTACGATGCTCACCTCGCTCGATGGCGCCTGACGAAGA GAAAATGACCAGACGATCACCTCTTGATTTTCCCATTGAATGGGAGAGACCCCGACCTGG AAGACGGCCAGATATTTTTCCGCAGTTCAGTCCAATGAAAACTCCACTCCCTCAGCCTCC TCCAACTGATCCTCCAGAGGAAGATGAAGAGGAAGAGAAAAAAGAAGAAGAAGAGAAGCC AGAGGAGGAGCCTGATACACCACCTAAAGAAACATGATTCTTACTGGTCTTCTCAGTAAT GGTGTTTTGGGTGAGCTGGGTGGTGTGCTTCAAAGAGGTGACTGATTTTTTCAAAGCTAA CGGGGTGCAAGAATTGCCAAACCTGGTTTCTGCTCTCACACTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
B1J1K3 |
Definition |
sp|B1J1K3|TTCA_PSEPW tRNA 2-thiocytidine biosynthesis protein ttcA OS=Pseudomonas putida (strain W619) |
Align length |
35 |
Score (bit) |
31.6 |
E-value |
3.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P7B9 |
Definition |
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
43 |
Score (bit) |
94.7 |
E-value |
3.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954504|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_J21, 5' (585 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ... 95 3e-18 tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul... 94 7e-18 tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten... 93 1e-17 tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten... 93 1e-17 tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz... 92 2e-17 tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom... 92 2e-17 tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs... 90 8e-17 tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza... 90 8e-17 tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m... 90 8e-17 tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m... 90 8e-17 tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m... 90 8e-17 tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m... 90 8e-17 tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p... 90 1e-16 tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein At3g2450... 89 1e-16 tr|Q8LE64|Q8LE64_ARATH Putative uncharacterized protein OS=Arabi... 87 7e-16 tr|A3A914|A3A914_ORYSJ Putative uncharacterized protein OS=Oryza... 60 7e-08 tr|A8JCL4|A8JCL4_CHLRE Predicted protein OS=Chlamydomonas reinha... 52 2e-05 tr|A4RRA5|A4RRA5_OSTLU Predicted protein OS=Ostreococcus lucimar... 45 0.002 tr|Q6GZT3|Q6GZT3_FRG3V Putative uncharacterized protein OS=Frog ... 35 2.4
>tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034399001 PE=4 SV=1 Length = 84
Score = 94.7 bits (234), Expect = 3e-18 Identities = 41/43 (95%), Positives = 43/43 (100%) Frame = +2
Query: 224 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 MAP+EEKMTRRSPLDFPIEWERP+PGRRPDIFPQFSPMKTPLP Sbjct: 1 MAPEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPLP 43
>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 147
Score = 93.6 bits (231), Expect = 7e-18 Identities = 40/44 (90%), Positives = 43/44 (97%) Frame = +2
Query: 221 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 SMAPDEEK+TRRSPLDFPIEWERP+PG RPDIFPQFSPMKTP+P Sbjct: 65 SMAPDEEKLTRRSPLDFPIEWERPKPGSRPDIFPQFSPMKTPIP 108
>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1 Length = 78
Score = 93.2 bits (230), Expect = 1e-17 Identities = 41/43 (95%), Positives = 42/43 (97%) Frame = +2
Query: 224 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 MAPDEEKMTRRSPLDFPIEW+RPRPGRR DIFPQFSPMKTPLP Sbjct: 1 MAPDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPLP 43
>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1 Length = 79
Score = 93.2 bits (230), Expect = 1e-17 Identities = 41/43 (95%), Positives = 42/43 (97%) Frame = +2
Query: 224 MAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 MAPDEEKMTRRSPLDFPIEW+RPRPGRR DIFPQFSPMKTPLP Sbjct: 1 MAPDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPLP 43
>tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacterized protein) (At2g17240/T23A1.10) OS=Arabidopsis thaliana GN=At2g17240 PE=2 SV=1 Length = 140
Score = 92.4 bits (228), Expect = 2e-17 Identities = 39/44 (88%), Positives = 44/44 (100%) Frame = +2
Query: 221 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 SMAP+EEK+TRR+PLDFPIEWERP+PGRRPDIFP+FSPMKTPLP Sbjct: 60 SMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 103
>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001 PE=4 SV=1 Length = 147
Score = 92.0 bits (227), Expect = 2e-17 Identities = 39/44 (88%), Positives = 43/44 (97%) Frame = +2
Query: 221 SMAPDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 SMAP+EEK+TRR+PLDFPIEW RP+PGRRPDIFPQFSPMKTPLP Sbjct: 64 SMAPEEEKLTRRNPLDFPIEWNRPKPGRRPDIFPQFSPMKTPLP 107
>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp. japonica GN=OJ2055_H10.18 PE=2 SV=1 Length = 144
Score = 90.1 bits (222), Expect = 8e-17 Identities = 38/42 (90%), Positives = 42/42 (100%) Frame = +2
Query: 227 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 APDEEK+TRRSPLDFPIEWE+P+PGRRPDIFP+FSPMKTPLP Sbjct: 57 APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPLP 98
>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08059 PE=4 SV=1 Length = 144
Score = 90.1 bits (222), Expect = 8e-17 Identities = 38/42 (90%), Positives = 42/42 (100%) Frame = +2
Query: 227 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 APDEEK+TRRSPLDFPIEWE+P+PGRRPDIFP+FSPMKTPLP Sbjct: 57 APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPLP 98
>tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 131
Score = 90.1 bits (222), Expect = 8e-17 Identities = 38/42 (90%), Positives = 42/42 (100%) Frame = +2
Query: 227 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 APDEEK+T+RSPLDFPIEWERP+PGRRPDIFP+FSPMKTPLP Sbjct: 44 APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 85
>tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 140
Score = 90.1 bits (222), Expect = 8e-17 Identities = 38/42 (90%), Positives = 42/42 (100%) Frame = +2
Query: 227 APDEEKMTRRSPLDFPIEWERPRPGRRPDIFPQFSPMKTPLP 352 APDEEK+T+RSPLDFPIEWERP+PGRRPDIFP+FSPMKTPLP Sbjct: 53 APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPLP 94
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